Miyakogusa Predicted Gene
- chr3.CM0091.630.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr3.CM0091.630.nd + phase: 0
(163 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 146 7e-36
AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 146 7e-36
AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 127 3e-30
AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 127 3e-30
AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 127 4e-30
AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleoti... 108 2e-24
AT4G39260.4 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 105 9e-24
AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-bindi... 92 2e-19
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 92 2e-19
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 92 2e-19
AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,... 90 6e-19
AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-bindi... 90 8e-19
AT4G13850.3 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 89 1e-18
AT4G13850.2 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 89 1e-18
AT4G13850.1 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 89 1e-18
AT4G13850.4 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 88 2e-18
AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 87 3e-18
AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 87 3e-18
AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 87 3e-18
AT4G24770.1 | Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31 (31... 85 2e-17
AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein | chr... 80 5e-16
AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-bindi... 80 8e-16
AT5G47320.1 | Symbols: RPS19 | RPS19 (40S ribosomal protein S19)... 79 9e-16
AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 79 1e-15
AT2G21690.1 | Symbols: | RNA-binding protein, putative | chr2:9... 79 1e-15
AT5G06210.1 | Symbols: | RNA-binding protein, putative | chr5:1... 79 1e-15
AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein, puta... 76 8e-15
AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein, puta... 76 8e-15
AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein, puta... 75 2e-14
AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing... 72 2e-13
AT3G08000.1 | Symbols: | RNA-binding protein, putative | chr3:2... 72 2e-13
AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 32... 72 2e-13
AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing... 72 2e-13
AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing... 70 5e-13
AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 70 5e-13
AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 70 5e-13
AT2G37510.1 | Symbols: | RNA-binding protein, putative | chr2:1... 70 6e-13
AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing... 70 6e-13
AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing... 69 1e-12
AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing... 69 1e-12
AT5G53720.1 | Symbols: | RNA recognition motif (RRM)-containing... 69 1e-12
AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing... 68 2e-12
AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing... 68 3e-12
AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing... 68 3e-12
AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing... 68 3e-12
AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing... 67 4e-12
AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing... 67 4e-12
AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing... 67 4e-12
AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing... 67 6e-12
AT1G22910.3 | Symbols: | RNA recognition motif (RRM)-containing... 67 6e-12
AT1G22910.1 | Symbols: | RNA recognition motif (RRM)-containing... 66 8e-12
AT1G22910.2 | Symbols: | RNA recognition motif (RRM)-containing... 66 8e-12
AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide bind... 66 9e-12
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2086710... 66 9e-12
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2086710... 66 9e-12
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2086710... 66 9e-12
AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230 FOR... 66 1e-11
AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing... 65 1e-11
AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 65 2e-11
AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 65 2e-11
AT5G53680.1 | Symbols: | RNA recognition motif (RRM)-containing... 65 2e-11
AT3G46020.1 | Symbols: | RNA-binding protein, putative | chr3:1... 65 2e-11
AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing... 64 5e-11
AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing... 64 5e-11
AT2G27330.1 | Symbols: | RNA recognition motif (RRM)-containing... 64 5e-11
AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 62 2e-10
AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing... 62 2e-10
AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing... 61 4e-10
AT3G14100.1 | Symbols: | oligouridylate-binding protein, putati... 61 4e-10
AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444)... 60 5e-10
AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing... 60 5e-10
AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing... 60 6e-10
AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing... 60 6e-10
AT3G06970.1 | Symbols: | RNA binding | chr3:2199659-2201156 REV... 60 7e-10
AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing... 60 7e-10
AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 60 7e-10
AT3G56860.2 | Symbols: UBA2A | UBA2A; AU-rich element binding / ... 60 8e-10
AT3G56860.1 | Symbols: UBA2A | UBA2A; RNA binding | chr3:2106168... 60 8e-10
AT3G56860.3 | Symbols: UBA2A | UBA2A; RNA binding | chr3:2106168... 60 8e-10
AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG... 59 9e-10
AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG... 59 9e-10
AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing... 59 9e-10
AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 59 1e-09
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 59 1e-09
AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 59 1e-09
AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 59 1e-09
AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing... 59 1e-09
AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing... 58 2e-09
AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing... 58 2e-09
AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing... 58 2e-09
AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing... 58 2e-09
AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS ... 58 3e-09
AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 58 3e-09
AT2G22090.2 | Symbols: UBA1A | UBA1A; RNA binding | chr2:9396487... 57 4e-09
AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding | chr4:1... 57 4e-09
AT2G14160.1 | Symbols: | nucleic acid binding | chr2:5983547-59... 57 4e-09
AT2G22090.1 | Symbols: UBA1A | UBA1A; AU-rich element binding / ... 57 4e-09
AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); ... 57 6e-09
AT3G04500.1 | Symbols: | RNA recognition motif (RRM)-containing... 56 8e-09
AT1G71800.1 | Symbols: | cleavage stimulation factor, putative ... 56 9e-09
AT1G13690.1 | Symbols: ATE1 | ATE1 (ATPase E1); nucleic acid bin... 55 1e-08
AT1G17370.1 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING PRO... 55 1e-08
AT1G17370.2 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING PRO... 55 1e-08
AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 2e-08
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 2e-08
AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); ... 54 3e-08
AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70 ... 54 3e-08
AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN ... 54 3e-08
AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 54 4e-08
AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 6e-08
AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL PR... 53 7e-08
AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RN... 53 9e-08
AT5G59860.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 2e-07
AT1G11650.1 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3... 52 2e-07
AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 2e-07
AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); ... 52 2e-07
AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3... 52 2e-07
AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTE... 51 3e-07
AT4G03110.1 | Symbols: | RNA-binding protein, putative | chr4:1... 51 3e-07
AT1G03457.2 | Symbols: | RNA-binding protein, putative | chr1:8... 50 5e-07
AT1G03457.1 | Symbols: | RNA-binding protein, putative | chr1:8... 50 6e-07
AT5G47620.3 | Symbols: | heterogeneous nuclear ribonucleoprotei... 50 7e-07
AT3G10400.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 7e-07
AT5G19350.1 | Symbols: | RNA-binding protein 45 (RBP45), putati... 50 8e-07
AT5G19350.2 | Symbols: | RNA-binding protein 45 (RBP45), putati... 50 8e-07
AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); ... 49 1e-06
AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); ... 49 1e-06
AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 49 2e-06
AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 48 2e-06
AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); ... 48 3e-06
AT2G44710.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 3e-06
AT5G19030.2 | Symbols: | RNA recognition motif (RRM)-containing... 48 3e-06
AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing... 47 4e-06
AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 4e-06
AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEI... 47 5e-06
AT4G16280.3 | Symbols: FCA | FCA; RNA binding | chr4:9208580-921... 47 5e-06
AT4G16280.2 | Symbols: FCA | FCA; RNA binding | chr4:9207180-921... 47 5e-06
AT1G47490.2 | Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:1... 47 7e-06
AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:1... 47 8e-06
AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing... 46 8e-06
AT5G08695.1 | Symbols: | nucleic acid binding / nucleotide bind... 46 1e-05
AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1/PARL1 (PARALLE... 45 2e-05
AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN ... 45 2e-05
AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633 F... 45 3e-05
AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing... 45 3e-05
AT2G37340.1 | Symbols: ATRSZ33, RSZ33 | RSZ33 (ARGININE/SERINE-R... 44 3e-05
AT3G52660.2 | Symbols: | RNA recognition motif (RRM)-containing... 44 4e-05
AT3G52660.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 4e-05
AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA... 44 4e-05
AT1G51510.1 | Symbols: Y14 | Y14; RNA binding / protein binding ... 44 5e-05
AT1G02840.2 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing facto... 44 6e-05
AT1G07350.2 | Symbols: | transformer serine/arginine-rich ribon... 43 7e-05
AT5G06000.1 | Symbols: ATEIF3G2, EIF3G2 | EIF3G2 (eukaryotic tra... 43 7e-05
AT1G02840.3 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing facto... 43 7e-05
AT1G02840.1 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing facto... 43 7e-05
AT3G53500.2 | Symbols: RSZ32 | RSZ32; nucleic acid binding | chr... 43 8e-05
AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic tra... 43 8e-05
AT1G60900.1 | Symbols: | U2 snRNP auxiliary factor large subuni... 43 8e-05
AT1G07350.1 | Symbols: | transformer serine/arginine-rich ribon... 43 9e-05
AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative / S... 43 9e-05
AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing facto... 43 1e-04
AT4G02430.1 | Symbols: | pre-mRNA splicing factor, putative / S... 43 1e-04
AT5G41690.1 | Symbols: | RNA binding | chr5:16687354-16691417 R... 42 1e-04
AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing... 42 1e-04
AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing... 42 1e-04
AT4G36690.2 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding | chr4... 42 1e-04
AT4G36690.3 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding | chr4... 42 2e-04
AT1G13190.1 | Symbols: | RNA recognition motif (RRM)-containing... 42 2e-04
AT3G18610.1 | Symbols: ATRANGAP1 | ATRANGAP1 (RAN GTPASE-ACTIVAT... 42 2e-04
AT3G55460.1 | Symbols: SCL30 | SCL30 (SC35-like splicing factor ... 42 2e-04
AT4G36690.1 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding | chr4... 41 3e-04
AT3G54230.1 | Symbols: | nucleic acid binding | chr3:20084850-2... 41 3e-04
AT3G54770.2 | Symbols: | RNA recognition motif (RRM)-containing... 41 3e-04
AT5G44200.2 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTE... 41 4e-04
AT5G44200.1 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTE... 41 4e-04
AT5G05720.1 | Symbols: | RNA recognition motif (RRM)-containing... 40 8e-04
>AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA
binding | chr2:9272557-9273396 REVERSE
Length = 159
Score = 146 bits (368), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 77/85 (90%)
Query: 1 MASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQ 60
MAS DVEYRCFVGGLAWATD LE AF+ YG+++DSK++NDRETGRSRGFGFVTF E+
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 61 SMKDAIEGMNGQDIDGRNVTVNEAQ 85
+MKDAIEGMNGQD+DGR++TVNEAQ
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQ 85
>AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA
binding / double-stranded DNA binding / single-stranded
DNA binding | chr2:9272557-9273396 REVERSE
Length = 176
Score = 146 bits (368), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 77/85 (90%)
Query: 1 MASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQ 60
MAS DVEYRCFVGGLAWATD LE AF+ YG+++DSK++NDRETGRSRGFGFVTF E+
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 61 SMKDAIEGMNGQDIDGRNVTVNEAQ 85
+MKDAIEGMNGQD+DGR++TVNEAQ
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQ 85
>AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1,
GLYCINE-RICH PROTEIN 8); RNA binding |
chr4:18274160-18274952 REVERSE
Length = 126
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 74/82 (90%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
++VEYRCFVGGLAWAT+ E L++ FS +G+++DSK++NDRE+GRSRGFGFVTF E++M+
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 64 DAIEGMNGQDIDGRNVTVNEAQ 85
DAIE MNG+++DGR +TVNEAQ
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
>AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1,
GLYCINE-RICH PROTEIN 8); RNA binding |
chr4:18274160-18274952 REVERSE
Length = 169
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 74/82 (90%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
++VEYRCFVGGLAWAT+ E L++ FS +G+++DSK++NDRE+GRSRGFGFVTF E++M+
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 64 DAIEGMNGQDIDGRNVTVNEAQ 85
DAIE MNG+++DGR +TVNEAQ
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
>AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1,
GLYCINE-RICH PROTEIN 8); RNA binding |
chr4:18274160-18274952 REVERSE
Length = 92
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 75/83 (90%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
++VEYRCFVGGLAWAT+ E L++ FS +G+++DSK++NDRE+GRSRGFGFVTF E++M+
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 64 DAIEGMNGQDIDGRNVTVNEAQA 86
DAIE MNG+++DGR +TVNEAQ+
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQS 84
>AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding /
nucleotide binding | chr3:9673190-9674292 FORWARD
Length = 245
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 63/84 (75%)
Query: 3 SADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSM 62
S D EYRCF+GGLAW T GL AF YG +V++KVV D+ +GRSRGFGF+TF +++M
Sbjct: 2 SEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAM 61
Query: 63 KDAIEGMNGQDIDGRNVTVNEAQA 86
+AI MNG D+DGR +TV++AQ
Sbjct: 62 DEAIAAMNGMDLDGRTITVDKAQP 85
>AT4G39260.4 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1,
GLYCINE-RICH PROTEIN 8); RNA binding |
chr4:18274160-18274952 REVERSE
Length = 105
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 60/67 (89%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
++VEYRCFVGGLAWAT+ E L++ FS +G+++DSK++NDRE+GRSRGFGFVTF E++M+
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 64 DAIEGMN 70
DAIE MN
Sbjct: 62 DAIEEMN 68
>AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding
protein 3); RNA binding | chr5:24578096-24579378 FORWARD
Length = 309
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 59/76 (77%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GG+A++ D + L +AF+ YGE+VD++V+ DRETGRSRGFGFVTF S ++ AI+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 69 MNGQDIDGRNVTVNEA 84
++G+D+ GR V VN A
Sbjct: 101 LDGRDLHGRVVKVNYA 116
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 60/76 (78%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL+W TD L++AF+++GE+ ++ V+ DRETGRSRGFGFV+F+ E S +AI+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 69 MNGQDIDGRNVTVNEA 84
M+G++++GR + VN A
Sbjct: 96 MDGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 60/76 (78%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL+W TD L++AF+++GE+ ++ V+ DRETGRSRGFGFV+F+ E S +AI+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 69 MNGQDIDGRNVTVNEA 84
M+G++++GR + VN A
Sbjct: 96 MDGKELNGRQIRVNLA 111
>AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative | chr5:20469903-20471191 REVERSE
Length = 289
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 59/81 (72%)
Query: 5 DVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKD 64
D +R +VG L W DS LE+ FS +G++VD++VV+DRETGRSRGFGFV ++E +
Sbjct: 204 DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNV 263
Query: 65 AIEGMNGQDIDGRNVTVNEAQ 85
AI ++GQ+++GR + VN A+
Sbjct: 264 AIAALDGQNLEGRAIKVNVAE 284
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
E + FVG L + DS+ L F G + S+V+ +R+T +SRGFGFVT ++ + + A+
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 67 EGMNGQDIDGRNVTVNEA 84
E N +++GR +TVN A
Sbjct: 172 EKFNSFEVNGRRLTVNRA 189
>AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding
protein 5); RNA binding | chr1:27919007-27920518 FORWARD
Length = 289
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGG++++TD GL +AFS YGE+VD+K++ DRETGRSRGF FVTF S + +A++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 69 MNGQDIDGRNVTVNEA 84
++GQD+ GR + VN A
Sbjct: 94 LDGQDLHGRRIRVNYA 109
>AT4G13850.3 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2) | chr4:8021310-8022061 FORWARD
Length = 144
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 57/80 (71%)
Query: 6 VEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
+ + F+GGL+W TD L AF+ +G++VD+KV+ DRETGRSRGFGFV F E + A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 66 IEGMNGQDIDGRNVTVNEAQ 85
I M+G++++GR++ VN A
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
>AT4G13850.2 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); RNA binding |
chr4:8021310-8022061 FORWARD
Length = 153
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 57/80 (71%)
Query: 6 VEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
+ + F+GGL+W TD L AF+ +G++VD+KV+ DRETGRSRGFGFV F E + A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 66 IEGMNGQDIDGRNVTVNEAQ 85
I M+G++++GR++ VN A
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
>AT4G13850.1 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021310-8022061 FORWARD
Length = 158
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 57/80 (71%)
Query: 6 VEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
+ + F+GGL+W TD L AF+ +G++VD+KV+ DRETGRSRGFGFV F E + A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 66 IEGMNGQDIDGRNVTVNEAQ 85
I M+G++++GR++ VN A
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
>AT4G13850.4 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2) | chr4:8021310-8022061 FORWARD
Length = 129
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 56/77 (72%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GGL+W TD L AF+ +G++VD+KV+ DRETGRSRGFGFV F E + AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 69 MNGQDIDGRNVTVNEAQ 85
M+G++++GR++ VN A
Sbjct: 96 MDGKELNGRHIRVNPAN 112
>AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 57/78 (73%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R +VG L+W D LE F+ G++V+++V+ DR++GRS+GFGFVT +S Q ++ AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 69 MNGQDIDGRNVTVNEAQA 86
+NG D+DGR + V+EA+A
Sbjct: 318 LNGADLDGRQIRVSEAEA 335
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
+ + FVG L++ DS L + F + G + +V+ D+ TGRSRGFGFVT ++ ++ A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157
Query: 67 EGMNGQDIDGRNVTVN 82
+ NG + +GR + VN
Sbjct: 158 QQFNGYEFEGRPLRVN 173
>AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 57/78 (73%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R +VG L+W D LE F+ G++V+++V+ DR++GRS+GFGFVT +S Q ++ AI
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 69 MNGQDIDGRNVTVNEAQA 86
+NG D+DGR + V+EA+A
Sbjct: 318 LNGADLDGRQIRVSEAEA 335
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
+ + FVG L++ DS L + F + G + +V+ D+ TGRSRGFGFVT ++ ++ A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157
Query: 67 EGMNGQDIDGRNVTVN 82
+ NG + +GR + VN
Sbjct: 158 QQFNGYEFEGRPLRVN 173
>AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr2:15642059-15643410 REVERSE
Length = 289
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 59/78 (75%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R +VG L+W D LE FS G++V+++V+ DR++GRS+GFGFVT+ S Q +++AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 69 MNGQDIDGRNVTVNEAQA 86
++G D+DGR + V+EA+A
Sbjct: 265 LDGADLDGRQIRVSEAEA 282
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 3 SADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSM 62
SAD+ + FVG L + DS L + F + G + +V+ D+ TGRSRGFGFVT +S +
Sbjct: 88 SADL--KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEV 145
Query: 63 KDAIEGMNGQDIDGRNVTVN 82
+ A + NG ++DGR + VN
Sbjct: 146 EAAAQQFNGYELDGRPLRVN 165
>AT4G24770.1 | Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U)
binding | chr4:12766233-12767962 REVERSE
Length = 329
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 57/78 (73%)
Query: 8 YRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIE 67
+R +VG L W D+ LE+ FS +G++V+++VV DRETGRSRGFGFVT + + +AI
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 68 GMNGQDIDGRNVTVNEAQ 85
++GQ+++GR + VN A+
Sbjct: 304 ALDGQNLEGRAIRVNVAE 321
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
E + FVG LA+ +S+ L F G + ++V+ +RET +SRGFGFVT +S + A+
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 67 EGMNGQDIDGRNVTVNEA 84
E N D++GR +TVN+A
Sbjct: 209 EKFNRYDLNGRLLTVNKA 226
>AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein |
chr5:1192462-1195414 FORWARD
Length = 310
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 56/78 (71%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R FVGGL+ LE+AFS +G+I+D +++ +R+TGRSRGFGF+TFA ++M ++I
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 69 MNGQDIDGRNVTVNEAQA 86
M+G+D R ++VN A+
Sbjct: 68 MHGRDFGDRVISVNRAEP 85
>AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-binding
protein 6); RNA binding | chr1:6415218-6416275 FORWARD
Length = 155
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 57/76 (75%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL+ +TD E L++AF ++G+IVD+ VV DRE+G SRGFGFVT+ S + +A++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 69 MNGQDIDGRNVTVNEA 84
M +++DGR + V+ A
Sbjct: 97 MQNKELDGRIIGVHPA 112
>AT5G47320.1 | Symbols: RPS19 | RPS19 (40S ribosomal protein S19);
RNA binding | chr5:19221028-19222178 FORWARD
Length = 212
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 55/77 (71%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ ++GGL+ TD L+ AFS++ + +++V+ ++ TGRSRG+GFV F SE S AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 69 MNGQDIDGRNVTVNEAQ 85
MNGQ+++G N++VN A+
Sbjct: 92 MNGQELNGFNISVNVAK 108
>AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr1:22097343-22098205 REVERSE
Length = 258
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 57/82 (69%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
+ E++ FVG L+W SE L AF G++V ++VV D +TGRSRG+GFV ++S+ M+
Sbjct: 173 PETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEME 232
Query: 64 DAIEGMNGQDIDGRNVTVNEAQ 85
A+E ++G +++GR + VN AQ
Sbjct: 233 TALESLDGFELEGRAIRVNLAQ 254
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 2 ASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQS 61
A V + + G L + DS L + + +V+ +R+TG+SRGF FVT ++ +
Sbjct: 79 PPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVED 138
Query: 62 MKDAIEGMNGQDIDGRNVTVNEA 84
I+ ++G + GR + VN A
Sbjct: 139 CNIIIDNLDGTEYLGRALKVNFA 161
>AT2G21690.1 | Symbols: | RNA-binding protein, putative |
chr2:9277194-9277677 REVERSE
Length = 117
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 3 SADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSM 62
+ +VEY CFV GL TD + L FS +G ++DSK++ DR+TG+SR FGFVTF E+SM
Sbjct: 2 ATNVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSM 61
Query: 63 KDAIEGMNGQDIDGRNVTV 81
DAI M+ ++ + V V
Sbjct: 62 TDAIMIMDVEESRSKCVNV 80
>AT5G06210.1 | Symbols: | RNA-binding protein, putative |
chr5:1878498-1879516 FORWARD
Length = 146
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 57/81 (70%)
Query: 6 VEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
V + F+GGL++ T +GL +AFS G++V++++V DR + RS+GFGFVTFAS + A
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
Query: 66 IEGMNGQDIDGRNVTVNEAQA 86
+ NGQ ++GR + V+ A+A
Sbjct: 92 LMEFNGQQLNGRTIFVDYAKA 112
>AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
++E R FVGGL+W LE F YG+I + +++ R+TGR RGFGF+TF +
Sbjct: 8 GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67
Query: 64 DAIEGMNGQDIDGRNVTVNEAQA 86
DAI+ M+G+++ + ++VN+A+
Sbjct: 68 DAIKHMHGRELGNKVISVNKAEP 90
>AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
++E R FVGGL+W LE F YG+I + +++ R+TGR RGFGF+TF +
Sbjct: 8 GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67
Query: 64 DAIEGMNGQDIDGRNVTVNEAQA 86
DAI+ M+G+++ + ++VN+A+
Sbjct: 68 DAIKHMHGRELGNKVISVNKAEP 90
>AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr4:8022597-8023158 FORWARD
Length = 87
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 52/73 (71%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R +VG L+ T + L +AFS YG +VD+ V+ DR T RSRGFGFVT++S + A+ G
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 69 MNGQDIDGRNVTV 81
M+G++++GR V+V
Sbjct: 64 MDGKELNGRRVSV 76
>AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:19236586-19238017 FORWARD
Length = 304
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGLAW T + + + F +GEIV++ V+ D+ TGRS+G+GFVTF ++ A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 69 MNGQDIDGRNVTVNEA 84
MN IDGR N A
Sbjct: 83 MN-PVIDGRRANCNLA 97
>AT3G08000.1 | Symbols: | RNA-binding protein, putative |
chr3:2555040-2555835 REVERSE
Length = 143
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GGL+W+ D + L+ AFS++GE+ + ++ D+ +GRSRGFGFV FA E A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 69 MNGQDIDGRNVTVNEA 84
M+G+ + GR + ++ A
Sbjct: 102 MDGKGLLGRPLRISFA 117
>AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 322);
RNA binding | chr3:19432597-19433833 FORWARD
Length = 329
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%)
Query: 5 DVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKD 64
D ++ + G L W S+GL+ AF ++ +KV+ +R TGRSRGFGF++F S ++++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 65 AIEGMNGQDIDGRNVTVNEA 84
A+ MNG +++GR + +N A
Sbjct: 276 ALATMNGVEVEGRALRLNLA 295
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
E R +VG L + S L + F G +VD ++V D+ T RSRGFGFVT S + K+A+
Sbjct: 115 EGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM 174
Query: 67 EGMNGQDIDGRNVTVN 82
+ N I GR V VN
Sbjct: 175 QMFNSSQIGGRTVKVN 190
>AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:28691826-28693400 REVERSE
Length = 285
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGLAW T SE L + F YGEI+++ V+ D+ TGRS+G+GFVTF ++ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 69 MNGQDIDGRNVTVNEA 84
IDGR N A
Sbjct: 85 PT-PIIDGRRANCNLA 99
>AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22188558-22189882 FORWARD
Length = 156
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
A+ FV GL+ T SEGL AF+ +GE+ D+KVV DR +G S+GFGFV +A+ +
Sbjct: 52 AEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSA 111
Query: 64 DAIEGMNGQDIDG 76
I GM+G+ +DG
Sbjct: 112 KGIAGMDGKFLDG 124
>AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 294
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
+++ +VG L W T +GL FS +G IV ++V++DR+TGR+R F F++F S + +DA
Sbjct: 212 QHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAA 270
Query: 67 EGMNGQDIDGRNVTVNE 83
NG +GR + V E
Sbjct: 271 LSFNGTQYEGRRIIVRE 287
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVN-DRETGRSRGFGFVTFASEQSMKDAIEGM 69
+V + + D L F +G ++ +VV+ + +TG SRG G+VT S S K AI +
Sbjct: 111 YVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASL 170
Query: 70 NGQDIDGRNVTV 81
+G ++ GR + V
Sbjct: 171 DGTEVGGREMRV 182
>AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 293
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
+++ +VG L W T +GL FS +G IV ++V++DR+TGR+R F F++F S + +DA
Sbjct: 211 QHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAA 269
Query: 67 EGMNGQDIDGRNVTVNE 83
NG +GR + V E
Sbjct: 270 LSFNGTQYEGRRIIVRE 286
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V + + D L F +G ++ +V + +TG SRG G+VT S S K AI ++
Sbjct: 111 YVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLD 170
Query: 71 GQDIDGRNVTV 81
G ++ GR + V
Sbjct: 171 GTEVGGREMRV 181
>AT2G37510.1 | Symbols: | RNA-binding protein, putative |
chr2:15750190-15751582 REVERSE
Length = 142
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 51/68 (75%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R FV GL+ T +E L+ AF+++G++VD++V+ DR++GRS+GFGFVT+A+ + + A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 69 MNGQDIDG 76
MN + +DG
Sbjct: 95 MNAKFLDG 102
>AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:7262868-7264823 REVERSE
Length = 274
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGLAW T SE L + F YG+I+++ V+ D+ TGRS+G+GFVTF ++ + A
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 69 MNGQDIDGRNVTVNEA 84
IDGR N A
Sbjct: 85 PT-PIIDGRRANCNLA 99
>AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445271-13447598 FORWARD
Length = 452
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 1 MASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQ 60
M SA + F+GG++W TD E L++ F YG++V++ ++ DR TGR+RGFGF+ FA
Sbjct: 5 MESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPS 64
Query: 61 SMKDAIEGMNGQDIDGRNVTVNEA 84
+ I M+ IDGR V +A
Sbjct: 65 VAERVI--MDKHIIDGRTVEAKKA 86
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL + + F +G I D V+ D T R RGFGF+TF SE+S+ D +
Sbjct: 120 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESV-DMVLH 178
Query: 69 MNGQDIDGRNVTVNEA 84
+++G+ V V A
Sbjct: 179 KTFHELNGKMVEVKRA 194
>AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445558-13447598 FORWARD
Length = 455
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 1 MASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQ 60
M SA + F+GG++W TD E L++ F YG++V++ ++ DR TGR+RGFGF+ FA
Sbjct: 8 MESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPS 67
Query: 61 SMKDAIEGMNGQDIDGRNVTVNEA 84
+ I M+ IDGR V +A
Sbjct: 68 VAERVI--MDKHIIDGRTVEAKKA 89
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL + + F +G I D V+ D T R RGFGF+TF SE+S+ D +
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESV-DMVLH 181
Query: 69 MNGQDIDGRNVTVNEA 84
+++G+ V V A
Sbjct: 182 KTFHELNGKMVEVKRA 197
>AT5G53720.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:21823848-21824238 FORWARD
Length = 100
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 5 DVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKD 64
D E + +V GL W T +EGL F +GEIV +KVV D T RS+GFGFVTF +S
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 65 AIEGMNGQDIDGRNVTVNEA 84
A E N IDGR V A
Sbjct: 66 ACENPN-HTIDGRTVNCKLA 84
>AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6744031-6746135 FORWARD
Length = 337
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+VGGL + E + + FS YG ++ K+VNDR R + +GFVTF++ +S DAIE M+
Sbjct: 10 YVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAIEDMD 68
Query: 71 GQDIDGRNVTVNE 83
G+ I GR V VN+
Sbjct: 69 GKSIGGRAVRVND 81
>AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GG++W TD E L FS YG++V++ ++ DR TGR+RGFGF+ FA + I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 69 MNGQDIDGRNVTVNEA 84
M+ IDGR V +A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL + E + F +G I D V+ D T R RGFGF+TF S+ ++ D +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAV-DRVLH 169
Query: 69 MNGQDIDGRNVTVNEA 84
+++G+ V V A
Sbjct: 170 KTFHELNGKLVEVKRA 185
>AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GG++W TD E L FS YG++V++ ++ DR TGR+RGFGF+ FA + I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 69 MNGQDIDGRNVTVNEA 84
M+ IDGR V +A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL + E + F +G I D V+ D T R RGFGF+TF S+ ++ D +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAV-DRVLH 169
Query: 69 MNGQDIDGRNVTVNEA 84
+++G+ V V A
Sbjct: 170 KTFHELNGKLVEVKRA 185
>AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519303-22520884 REVERSE
Length = 448
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GG++W TD E L FS YG++V++ ++ DR TGR+RGFGF+ FA + I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 69 MNGQDIDGRNVTVNEA 84
M+ IDGR V +A
Sbjct: 65 MDKHIIDGRTVEAKKA 80
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL + E + F +G I D V+ D T R RGFGF+TF S+ ++ D +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAV-DRVLH 169
Query: 69 MNGQDIDGRNVTVNEA 84
+++G+ V V A
Sbjct: 170 KTFHELNGKLVEVKRA 185
>AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19353052-19354068 FORWARD
Length = 253
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 2 ASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQS 61
A D Y+ +VG LA E LE FS G++V +KV T +S GFGFVTF+SE+
Sbjct: 171 AFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEED 230
Query: 62 MKDAIEGMNGQDIDGRNVTVNEA 84
++ AI +N ++G+ + VN+A
Sbjct: 231 VEAAIVALNNSLLEGQKIRVNKA 253
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 2 ASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQS 61
S++ R ++G + +E L K +G + +V+ D+ +GRSR FGF T S +
Sbjct: 70 PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVED 129
Query: 62 MKDAIEGMNGQDIDGRNVTVN 82
+E +NG ++GR + VN
Sbjct: 130 ANAVVEKLNGNTVEGREIKVN 150
>AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19353052-19354068 FORWARD
Length = 253
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 2 ASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQS 61
A D Y+ +VG LA E LE FS G++V +KV T +S GFGFVTF+SE+
Sbjct: 171 AFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEED 230
Query: 62 MKDAIEGMNGQDIDGRNVTVNEA 84
++ AI +N ++G+ + VN+A
Sbjct: 231 VEAAIVALNNSLLEGQKIRVNKA 253
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 2 ASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQS 61
S++ R ++G + +E L K +G + +V+ D+ +GRSR FGF T S +
Sbjct: 70 PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVED 129
Query: 62 MKDAIEGMNGQDIDGRNVTVN 82
+E +NG ++GR + VN
Sbjct: 130 ANAVVEKLNGNTVEGREIKVN 150
>AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29452210-29455074 FORWARD
Length = 287
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 5 DVEY-RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
D Y + FVGGLAW T ++ + + F +GEI+++ ++ D+ TG+S+G+GFVTF S
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 64 DAIEGMNGQDIDGRNVTVNEA 84
A+ N IDGR N A
Sbjct: 73 RAVADPN-PVIDGRKANCNIA 92
>AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29452210-29454139 FORWARD
Length = 271
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGLAW T ++ + + F +GEI+++ ++ D+ TG+S+G+GFVTF S A+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 69 MNGQDIDGRNVTVNEA 84
N IDGR N A
Sbjct: 78 PN-PVIDGRKANCNIA 92
>AT1G22910.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105797-8107938 FORWARD
Length = 347
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 5 DVEY-RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
D Y + FVGGLAW T E ++K F +GEI+++ V+ D+ +GRS+G+GFVTF ++ +
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 64 DAIEGMNGQDIDGRNVTVNEA 84
A IDGR N A
Sbjct: 69 SACVDAT-PVIDGRRANCNLA 88
>AT1G22910.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105797-8107648 FORWARD
Length = 249
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 5 DVEY-RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
D Y + FVGGLAW T E ++K F +GEI+++ V+ D+ +GRS+G+GFVTF ++ +
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 64 DAIEGMNGQDIDGRNVTVNEA 84
A IDGR N A
Sbjct: 69 SACVDAT-PVIDGRRANCNLA 88
>AT1G22910.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105797-8107607 FORWARD
Length = 242
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 5 DVEY-RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
D Y + FVGGLAW T E ++K F +GEI+++ V+ D+ +GRS+G+GFVTF ++ +
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 64 DAIEGMNGQDIDGRNVTVNEA 84
A IDGR N A
Sbjct: 69 SACVDAT-PVIDGRRANCNLA 88
>AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide binding
| chr5:3640350-3640877 REVERSE
Length = 175
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 3 SADVEY-RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQS 61
+ D Y + +VGGL W T +EGL F +G+I+ +V DRETGRS G+GFVTF +S
Sbjct: 46 NVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAES 105
Query: 62 MKDAIEGMNGQDIDGRNVTVNEA 84
A + IDGR N A
Sbjct: 106 ATRACQNPKPV-IDGREAKCNLA 127
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 66.2 bits (160), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
E ++G L + +GL FS++GEIV +KV+ DR TG S+G+GFV +A Q A+
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538
Query: 67 EGMNGQDIDGRNVTVNEA 84
+ MNG +GR + V A
Sbjct: 539 QAMNGYRFEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 66.2 bits (160), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
E ++G L + +GL FS++GEIV +KV+ DR TG S+G+GFV +A Q A+
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538
Query: 67 EGMNGQDIDGRNVTVNEA 84
+ MNG +GR + V A
Sbjct: 539 QAMNGYRFEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 66.2 bits (160), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
E ++G L + +GL FS++GEIV +KV+ DR TG S+G+GFV +A Q A+
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538
Query: 67 EGMNGQDIDGRNVTVNEA 84
+ MNG +GR + V A
Sbjct: 539 QAMNGYRFEGRTLAVRIA 556
>AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230
FORWARD
Length = 291
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGLAW T ++ + + F +GEI+++ ++ D+ TG+S+G+GFVTF S A+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 69 MNGQDIDGRNVTVNEA 84
N IDGR N A
Sbjct: 78 PN-PVIDGRKANCNIA 92
>AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:17427345-17429584 FORWARD
Length = 379
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 6 VEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
+E + V G+ W DS+GL+ S +G++ D V+ DR TGRSRGFG+VTFAS + K+A
Sbjct: 1 MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Query: 66 IEG 68
++G
Sbjct: 61 LKG 63
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R FV + + F YGEI D + D + + RG GF+TF+S S++D +E
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME- 150
Query: 69 MNGQDIDGRNVTVNEAQA 86
+ D+ G V V+ A
Sbjct: 151 -DTHDLGGTTVAVDRATP 167
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVG L + L F +G I D+ + D + RGFGFVTFA E + D +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFA-ENGVADRV-A 298
Query: 69 MNGQDIDGRNVTVNEAQA 86
+I G+ V ++ A
Sbjct: 299 RRSHEICGQEVAIDSATP 316
>AT3G07810.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative |
chr3:2492881-2495058 FORWARD
Length = 494
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GG++W T+ E L++ FS++GE++++ ++ DR TGR+RGFGFV FA + I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI-- 64
Query: 69 MNGQDIDGRNVTVNEA 84
+IDGR V +A
Sbjct: 65 TEKHNIDGRLVEAKKA 80
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL + + F +G D V+ D T R RGFGF+T+ SE++++ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL- 167
Query: 69 MNGQDIDGRNVTVNEA 84
+++G+ V V A
Sbjct: 168 KTFHELNGKMVEVKRA 183
>AT3G07810.2 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative |
chr3:2492881-2495108 FORWARD
Length = 495
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GG++W T+ E L++ FS++GE++++ ++ DR TGR+RGFGFV FA + I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI-- 64
Query: 69 MNGQDIDGRNVTVNEA 84
+IDGR V +A
Sbjct: 65 TEKHNIDGRLVEAKKA 80
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL + + F +G D V+ D T R RGFGF+T+ SE++++ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL- 167
Query: 69 MNGQDIDGRNVTVNEA 84
+++G+ V V A
Sbjct: 168 KTFHELNGKMVEVKRA 183
>AT5G53680.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:21815608-21816335 FORWARD
Length = 169
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ +VGGL W T EGL F +GEI+ VV DRET RS+G+GFVTF +S A +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 69 MNGQDIDGR 77
N I+GR
Sbjct: 74 PNP-TIEGR 81
>AT3G46020.1 | Symbols: | RNA-binding protein, putative |
chr3:16923496-16924235 REVERSE
Length = 102
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 6 VEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
+ + FV L+ T + L + FS +G+I +++++ D ET R +GFGF+TF SE + A
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 66 IEGMNGQDIDGRNVTVNEAQ 85
++ ++G+ +DGR + V A+
Sbjct: 65 LKSLDGKIVDGRLIFVEVAK 84
>AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144612-12146020 FORWARD
Length = 245
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFA-SEQSMKDAIE 67
+ FVGGLAW T L F +G+IV++ V+ D+ +GRS+G+GFVTF E + K ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 68 GMNGQDIDGRNVTVNEA 84
IDGR N A
Sbjct: 68 --PAPVIDGRRANCNLA 82
>AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144612-12146020 FORWARD
Length = 244
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFA-SEQSMKDAIE 67
+ FVGGLAW T L F +G+IV++ V+ D+ +GRS+G+GFVTF E + K ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 68 GMNGQDIDGRNVTVNEA 84
IDGR N A
Sbjct: 68 --PAPVIDGRRANCNLA 82
>AT2G27330.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:11702428-11703641 REVERSE
Length = 116
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 50/77 (64%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
FV G+++++ E L +AFS YG+++ V+ D+ R +GF +VTF+S++ + A+ +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 70 NGQDIDGRNVTVNEAQA 86
N Q +DGR V ++ +A
Sbjct: 83 NAQLVDGRVVILDTTKA 99
>AT4G14300.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative |
chr4:8231175-8232781 FORWARD
Length = 411
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGG++W TD + L + F+ YGE+ + V+ D+ TGR RGFGFV F+ + ++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ- 65
Query: 69 MNGQDIDGRNVTVNEAQA 86
ID R V V A +
Sbjct: 66 -EKHSIDTREVDVKRAMS 82
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL E + F YG + D ++ D+ T R RGFGFV+F SE ++ D++
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAV-DSVLH 169
Query: 69 MNGQDIDGRNVTVNEA 84
D+ G+ V V A
Sbjct: 170 KTFHDLSGKQVEVKRA 185
>AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9399477-9400625 REVERSE
Length = 382
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIE 67
FV GL W T E L+ AF YGEI + VV D++TGR++GFGFV F + + + A++
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK 222
>AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:16242711-16244651 FORWARD
Length = 423
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGLA T S K F YGEI DS ++ DR+TG+ RGFGFVT+A + I+
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 69 MNGQDIDGRNVTVN 82
+ I G+ V +
Sbjct: 102 -DNHIIIGKQVEIK 114
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 1 MASADVE-YRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASE 59
M+S D + + FVGG+ + D + ++ F +GE+ + +++ D TGRSRGFGFVT+ SE
Sbjct: 122 MSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESE 181
Query: 60 QSMKDAIEGMNGQDIDGRNVTVNEAQA 86
+ + N ++ G V + +A+
Sbjct: 182 DMVDHLLAKGNRIELSGTQVEIKKAEP 208
>AT3G14100.1 | Symbols: | oligouridylate-binding protein, putative
| chr3:4673034-4675957 FORWARD
Length = 427
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
+ FVG L+ L ++FS + D++V+ D++TGRSRGFGFV+F ++Q + AI
Sbjct: 143 HFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 202
Query: 67 EGMNGQDIDGRNVTVN 82
MNG+ + R + N
Sbjct: 203 NEMNGKWLSSRQIRCN 218
>AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444);
RNA binding | chr2:8038636-8040599 REVERSE
Length = 363
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 3 SADVEYRCFVGGLAWATDSEGLEKAFSTYGEIV-DSKVVNDRETGRSRGFGFVTFASEQS 61
S DV F+G L D + L FS +G I + K++ D +TG SRGFGF+++ S ++
Sbjct: 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEA 166
Query: 62 MKDAIEGMNGQDIDGRNVTVNEA 84
AIE M GQ + R +TV+ A
Sbjct: 167 SDAAIESMTGQYLSNRQITVSYA 189
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
+VGGL E L + F G +V+ V DR T + +GF+ + SE+ AI+ +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 70 NGQDIDGRNVTVNEA 84
N + G+ + VN+A
Sbjct: 87 NMIKLHGKPIRVNKA 101
>AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254855-4256021 FORWARD
Length = 231
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GGL T + K F YGEI DS ++ DR TG+ RGFGF+TFA + IE
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE- 78
Query: 69 MNGQDIDGRNVTV 81
+ I+G+ V +
Sbjct: 79 -DTHVINGKQVEI 90
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGG+ + L+ F+ YG +V+ +V+ D ET RSRGFGFV F SE+ + + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 69 MNGQDIDGRNVTV 81
N D+ V++
Sbjct: 170 GNMIDMADTQVSL 182
>AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:6067387-6069091 REVERSE
Length = 369
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIE 67
+ FVGG++W T +E F +GE+VDS ++ DR TG RGFGFVTFA + +E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL + + L+ F YG+I++ +++ D TGRSRGFGFVTF +E S+
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 69 MNGQDIDGRNVTVNEAQA 86
++ + V + A+
Sbjct: 218 GKVHELGDKQVEIKRAEP 235
>AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254855-4256628 FORWARD
Length = 358
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GGL T + K F YGEI DS ++ DR TG+ RGFGF+TFA + IE
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE- 78
Query: 69 MNGQDIDGRNVTV 81
+ I+G+ V +
Sbjct: 79 -DTHVINGKQVEI 90
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGG+ + L+ F+ YG +V+ +V+ D ET RSRGFGFV F SE+ + + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 69 MNGQDIDGRNVTVNEAQA 86
N D+ V + +A+
Sbjct: 170 GNMIDMADTQVEIKKAEP 187
>AT3G06970.1 | Symbols: | RNA binding | chr3:2199659-2201156
REVERSE
Length = 317
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVG L W T ++ L + F +G++VD+ VV++ GRS+G+GF+TF S A++
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 69 MNGQDIDGRNVTVNEAQA 86
+ IDGR N A A
Sbjct: 73 -SKPIIDGRTTNCNLASA 89
>AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20284841-20286805 REVERSE
Length = 261
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGLAW T E + F YG+I+++ +++D+ T RS+G+GFVTF ++ A E
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 69 MNGQDIDGRNVTVNEA 84
+ I+GR N A
Sbjct: 78 -STPIINGRRANCNLA 92
>AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 426
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
+ FVG L+ L +FS + D++V+ D++TGRSRGFGFV+F ++Q + AI
Sbjct: 147 HFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 206
Query: 67 EGMNGQDIDGRNVTVN 82
MNG+ + R + N
Sbjct: 207 NEMNGKWVSSRQIRCN 222
>AT3G56860.2 | Symbols: UBA2A | UBA2A; AU-rich element binding / RNA
binding | chr3:21061687-21063123 REVERSE
Length = 478
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 5 DVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKD 64
V + FV GL W T +E L +AF YGEI D K V D+ +G+S+G+GF+ + S ++
Sbjct: 137 PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARN 196
Query: 65 AIE 67
A++
Sbjct: 197 ALK 199
>AT3G56860.1 | Symbols: UBA2A | UBA2A; RNA binding |
chr3:21061687-21063123 REVERSE
Length = 478
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 5 DVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKD 64
V + FV GL W T +E L +AF YGEI D K V D+ +G+S+G+GF+ + S ++
Sbjct: 137 PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARN 196
Query: 65 AIE 67
A++
Sbjct: 197 ALK 199
>AT3G56860.3 | Symbols: UBA2A | UBA2A; RNA binding |
chr3:21061687-21063123 REVERSE
Length = 478
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 5 DVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKD 64
V + FV GL W T +E L +AF YGEI D K V D+ +G+S+G+GF+ + S ++
Sbjct: 137 PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARN 196
Query: 65 AIE 67
A++
Sbjct: 197 ALK 199
>AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
Length = 303
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 8 YRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIE 67
Y V + + T ++ L F+ YG++VD + DR TG SRGF FV + + A+E
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75
Query: 68 GMNGQDIDGRNVTVNEAQ 85
++G+ +DGR +TV A+
Sbjct: 76 RLDGRVVDGREITVQFAK 93
>AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
Length = 303
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 8 YRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIE 67
Y V + + T ++ L F+ YG++VD + DR TG SRGF FV + + A+E
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75
Query: 68 GMNGQDIDGRNVTVNEAQ 85
++G+ +DGR +TV A+
Sbjct: 76 RLDGRVVDGREITVQFAK 93
>AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:7331745-7333755 FORWARD
Length = 374
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 51/77 (66%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+ GL++ T + L AF +GE+V+ K++ D+ + RS+G+ F+ + +E++ A++
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 69 MNGQDIDGRNVTVNEAQ 85
MNG+ I+G + V+ A+
Sbjct: 343 MNGKIINGWMIVVDVAK 359
>AT2G33410.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative |
chr2:14163161-14164511 FORWARD
Length = 404
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GG++W TD L + FS +GE++ V+ ++ TGR RGFGFV F+ + ++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ- 65
Query: 69 MNGQDIDGRNVTVNEAQA 86
+ ID R+V V A +
Sbjct: 66 -DKHHIDNRDVDVKRAMS 82
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL A S+ F TYG + D+ ++ D+ T R RGFGFV+F SE S+ D +
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSV-DLVLH 169
Query: 69 MNGQDIDGRNVTVNEA 84
D++G+ V V A
Sbjct: 170 KTFHDLNGKQVEVKRA 185
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8390938-8393686 FORWARD
Length = 613
Score = 59.3 bits (142), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 2 ASADVEYR-CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQ 60
A D+ R FV G W T E L+ AF +YGEI + VV D++TGR +G+GFV F + +
Sbjct: 401 ADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRK 460
Query: 61 SMKDAIE 67
++A++
Sbjct: 461 GAREALK 467
>AT5G47620.2 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative |
chr5:19319774-19321504 REVERSE
Length = 431
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GG++W T + L F ++GE++++ ++ DR TGR+RGFGFV FA + +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-- 64
Query: 69 MNGQDIDGRNVTVNEA 84
+ IDG+ V +A
Sbjct: 65 LLKHIIDGKIVEAKKA 80
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGLA + +K F+ +G I D V+ D T R RGFGF+++ SE+++ D +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV-DKVLQ 165
Query: 69 MNGQDIDGRNVTVNEA 84
+++G+ V V A
Sbjct: 166 KTFHELNGKMVEVKLA 181
>AT5G47620.1 | Symbols: | heterogeneous nuclear
ribonucleoprotein, putative / hnRNP, putative |
chr5:19319774-19321504 REVERSE
Length = 431
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ F+GG++W T + L F ++GE++++ ++ DR TGR+RGFGFV FA + +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-- 64
Query: 69 MNGQDIDGRNVTVNEA 84
+ IDG+ V +A
Sbjct: 65 LLKHIIDGKIVEAKKA 80
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGLA + +K F+ +G I D V+ D T R RGFGF+++ SE+++ D +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV-DKVLQ 165
Query: 69 MNGQDIDGRNVTVNEA 84
+++G+ V V A
Sbjct: 166 KTFHELNGKMVEVKLA 181
>AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:27647462-27649047 REVERSE
Length = 181
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ +V GL++ T + L F +G ++ +V D+ R +GF F+ + +E+ AI+G
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 69 MNGQDIDGRNVTVNEAQ 85
M+G+ +DGR + V EA+
Sbjct: 138 MHGKFLDGRVIFVEEAK 154
>AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17134216-17135571 FORWARD
Length = 451
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 6 VEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
V + FV GL W T ++ L AF YGEI D K V D+ +G+S+G+GF+ F S ++A
Sbjct: 126 VHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNA 185
Query: 66 IE 67
++
Sbjct: 186 LK 187
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 5 DVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKD 64
+V+ + +V ++ D + L + FS +GEI + + D+ TGR +GF + S +S K
Sbjct: 224 NVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKK 283
Query: 65 AIE 67
A+E
Sbjct: 284 ALE 286
>AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17134216-17135571 FORWARD
Length = 451
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 6 VEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
V + FV GL W T ++ L AF YGEI D K V D+ +G+S+G+GF+ F S ++A
Sbjct: 126 VHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNA 185
Query: 66 IE 67
++
Sbjct: 186 LK 187
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 5 DVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKD 64
+V+ + +V ++ D + L + FS +GEI + + D+ TGR +GF + S +S K
Sbjct: 224 NVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKK 283
Query: 65 AIE 67
A+E
Sbjct: 284 ALE 286
>AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052851-5054065 FORWARD
Length = 404
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 2 ASADVEYR-CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQ 60
A +D+ R F+ GLA T +EGL FS+YG++ ++ V+ D+ TG+S+G+GFVTF
Sbjct: 68 ADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
Query: 61 SMKDAIEGMNGQDIDGRNVTVNEAQA 86
A++ + + IDGR VTV + A
Sbjct: 128 GALLALKEPS-KKIDGR-VTVTQLAA 151
>AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052851-5054065 FORWARD
Length = 404
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 2 ASADVEYR-CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQ 60
A +D+ R F+ GLA T +EGL FS+YG++ ++ V+ D+ TG+S+G+GFVTF
Sbjct: 68 ADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
Query: 61 SMKDAIEGMNGQDIDGRNVTVNEAQA 86
A++ + + IDGR VTV + A
Sbjct: 128 GALLALKEPS-KKIDGR-VTVTQLAA 151
>AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS
THALIANA RNA-BINDING PROTEIN 1); RNA binding |
chr1:21731039-21732204 FORWARD
Length = 360
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 8 YRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIE 67
Y+ FVGG+A T E L++ FS YG ++++ V ++ TG+ RGFGFV FA++ + A+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
Query: 68 GMNGQDIDGRNVTVNEA 84
+ I G+ V V +A
Sbjct: 66 --DTHFILGKPVDVRKA 80
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGL+ T E + F +G D V++D T R RGFGFVT+ SE S++ ++
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 69 MNGQDIDGRNVTVNEA 84
N ++ + V V A
Sbjct: 181 -NFHELSDKRVEVKRA 195
>AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr2:14905420-14906669 FORWARD
Length = 308
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 2 ASADVEYRCFVGGLAWATDSEGLEKAFSTYG-EIVDSKVVNDRETGRSRGFGFVTFASEQ 60
A D ++ +V LAW S L + F+ V ++VV GRS G+GFV+FA+ +
Sbjct: 188 APGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATRE 247
Query: 61 SMKDAIEGMNGQDIDGRNVTV 81
++AI +NG++I GR +T+
Sbjct: 248 EAENAITKLNGKEIMGRPITL 268
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
++++ + FV L W+ + + F G + + +++ ++ G++RGF FVT AS + +
Sbjct: 91 SNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQ 149
Query: 64 DAIEGMNGQDIDGRNVTVNEAQ 85
AI+ + + GR ++V+ A+
Sbjct: 150 AAIDKFDTFQVSGRIISVSFAR 171
>AT2G22090.2 | Symbols: UBA1A | UBA1A; RNA binding |
chr2:9396487-9397530 REVERSE
Length = 347
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 2 ASADVEYR-CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQ 60
A DV +R FV GL W T E L F YGEI + VV D+ TG+++GFGFV F + +
Sbjct: 97 ADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRK 156
Query: 61 SMKDAIE 67
K+A++
Sbjct: 157 GAKEALK 163
>AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding |
chr4:13554989-13557769 REVERSE
Length = 415
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 7 EYRCFVGGLAWATDSEGLEKAF-STYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
E+ FVG LA L + F + Y + +KVVNDR TGRS+G+GFV FA E A
Sbjct: 172 EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRA 231
Query: 66 IEGMNGQDIDGRNVTVNEA 84
+ MNGQ R + A
Sbjct: 232 MTEMNGQYCSSRPMRTGPA 250
>AT2G14160.1 | Symbols: | nucleic acid binding |
chr2:5983547-5983883 REVERSE
Length = 85
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 17/85 (20%)
Query: 1 MASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDR-------ETGRS----- 48
MAS +VE+ C+VG L T+ L+ AFS +G+++ S V+ +R E G
Sbjct: 1 MASTNVEFTCYVGNLESDTEENDLKNAFSQFGDVIHSNVICERDYEYFDYENGYEYDLPV 60
Query: 49 -----RGFGFVTFASEQSMKDAIEG 68
+ +GFV+F E+SMKDAI+G
Sbjct: 61 SVTTRKVYGFVSFKDEKSMKDAIKG 85
>AT2G22090.1 | Symbols: UBA1A | UBA1A; AU-rich element binding / RNA
binding | chr2:9395651-9397530 REVERSE
Length = 343
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 2 ASADVEYR-CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQ 60
A DV +R FV GL W T E L F YGEI + VV D+ TG+++GFGFV F + +
Sbjct: 97 ADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRK 156
Query: 61 SMKDAIE 67
K+A++
Sbjct: 157 GAKEALK 163
>AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA
binding / translation initiation factor |
chr2:9950289-9953121 FORWARD
Length = 662
Score = 56.6 bits (135), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
FV L + D++ L +AFS G IV KV D G+SRG+GFV F +E S K+AIE +N
Sbjct: 137 FVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 71 GQDIDGRNVTV 81
G+ ++ + + V
Sbjct: 196 GKVLNDKQIFV 206
Score = 49.7 bits (117), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V L+ AT + L+ F YG I + V+ D + G+SR FGFV F + + A+E +N
Sbjct: 228 YVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALN 286
Query: 71 GQDIDGRNVTVNEAQ 85
G+ D + V +AQ
Sbjct: 287 GKKFDDKEWYVGKAQ 301
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V L E L + F+ +G I KV+ D +G S+G GFV F++ + MN
Sbjct: 331 YVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 71 GQDIDGRNVTVNEAQ 85
G+ + G+ + V AQ
Sbjct: 390 GKMVGGKPLYVALAQ 404
>AT3G04500.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:1212071-1213801 REVERSE
Length = 245
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
+YR F G L + + L KAF+ + +KV+ D+ TG+++G+GFV+F + + A+
Sbjct: 136 DYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAAL 195
Query: 67 EGMNGQDIDGRNVTVNEA 84
+ MNG+ + R + + ++
Sbjct: 196 KEMNGKYVGNRPIKLRKS 213
>AT1G71800.1 | Symbols: | cleavage stimulation factor, putative |
chr1:27003268-27005512 FORWARD
Length = 461
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MASADVEYRC-FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASE 59
MAS+ + RC FVG + + E L + G +V ++V DRETG+ +G+GF + E
Sbjct: 1 MASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 60
Query: 60 QSMKDAIEGMNGQDIDGRNVTV 81
++ A + +I+GR + V
Sbjct: 61 ETALSARRNLQSYEINGRQLRV 82
>AT1G13690.1 | Symbols: ATE1 | ATE1 (ATPase E1); nucleic acid
binding | chr1:4693377-4694176 FORWARD
Length = 177
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
+VGGLA + L AF +G+I D K D+ + R FGFVTF + A++ M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 70 NGQDIDGRNVTVNEA 84
+G ++ GR +TVN A
Sbjct: 75 DGAELYGRVLTVNYA 89
>AT1G17370.1 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING
PROTEIN 1B); mRNA 3'-UTR binding | chr1:5951835-5954818
REVERSE
Length = 419
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
+ FVG L+ L FS Y D++V+ D++TGRSRGFGFV+F ++Q + AI
Sbjct: 138 HFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 197
Query: 67 EGMNGQDIDGRNVTVN 82
+ + G+ + R + N
Sbjct: 198 DEITGKWLGSRQIRCN 213
>AT1G17370.2 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING
PROTEIN 1B) | chr1:5951835-5954818 REVERSE
Length = 416
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
+ FVG L+ L FS Y D++V+ D++TGRSRGFGFV+F ++Q + AI
Sbjct: 138 HFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 197
Query: 67 EGMNGQDIDGRNVTVN 82
+ + G+ + R + N
Sbjct: 198 DEITGKWLGSRQIRCN 213
>AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357505-6359083 REVERSE
Length = 172
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
FV G + + L+K FS +G++ + K++ + T +S G+G+V F S++ + A+E MN
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 71 GQDIDGRNVTVNEAQA 86
G+ DGR + V Q
Sbjct: 140 GKFFDGRFILVKFGQP 155
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17362319-17363754 REVERSE
Length = 352
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+VGG+ + L FS YGEIVD ++ D+ TG+S+GF F+ + ++S A++ +N
Sbjct: 39 YVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLN 98
Query: 71 GQDIDGRNVTVNEAQA 86
G + GR + V+ A
Sbjct: 99 GALVLGRTIKVDHCGA 114
>AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA
binding | chr1:8055588-8058788 FORWARD
Length = 660
Score = 54.3 bits (129), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
F+ L + D++ L + FS++G I+ KV D TGRS+G+GFV F E+S + AI+ +N
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 71 GQDIDGRNVTV 81
G ++ + V V
Sbjct: 198 GMLMNDKQVFV 208
Score = 47.0 bits (110), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 18 ATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGR 77
+ D E L++ FS YG + SKV+ + + G SRGFGFV +++ + A+ MNG+ I +
Sbjct: 342 SVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRK 400
Query: 78 NVTVNEAQ 85
+ + AQ
Sbjct: 401 PLYIALAQ 408
Score = 42.7 bits (99), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V L + L K F +G ++ S VV ++G SR FGFV F ++ A+E MN
Sbjct: 232 YVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 71 GQDIDGRNVTVNEAQ 85
G + + V AQ
Sbjct: 291 GISLGDDVLYVGRAQ 305
>AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70
kDa, putative | chr2:18020508-18022453 FORWARD
Length = 333
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
FVG L+ T + L + S YG I + ++V TG SRG+GFV + +E+ M A E +
Sbjct: 67 FVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAH 126
Query: 71 GQDIDGRNVTVN 82
IDGR + V+
Sbjct: 127 HSLIDGREIIVD 138
>AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN
45A); RNA binding | chr5:22312638-22315352 FORWARD
Length = 387
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 7 EYRCFVGGLAWATDSEGLEKAF-STYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
++ FVG LA L F + YG + +KVV DR TGRS+G+GFV FA E A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 66 IEGMNGQDIDGRNVTVNEA 84
+ MNGQ R + + A
Sbjct: 213 MTEMNGQYCSTRPMRIGPA 231
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 2 ASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQS 61
+++DV+ ++G L D + F+ GE +KV+ ++ TG+S G+GF+ F S
Sbjct: 55 SASDVK-SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSV 113
Query: 62 MKDAIEGMNGQDIDGRNVT--VNEAQA 86
+ ++ NG + T +N AQA
Sbjct: 114 AERVLQTYNGAPMPSTEQTFRLNWAQA 140
>AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 430
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIV----DSKVVNDRETGRSRGFGFVTFASEQSM 62
+ FVG L+ L +FS + D++V+ D++TGRSRGFGFV+F ++Q
Sbjct: 147 HFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDA 206
Query: 63 KDAIEGMNGQDIDGRNVTVN 82
+ AI MNG+ + R + N
Sbjct: 207 QTAINEMNGKWVSSRQIRCN 226
>AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:10846372-10847256 FORWARD
Length = 152
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ V L ++T + L++ FS +GEI + K++ D RS+G+ F+ F S+ AIE
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 69 MNGQDIDGRNVTVNEAQA 86
M+ + +GR + ++ A+
Sbjct: 101 MDRRMYNGRMIYIDIAKP 118
>AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL
PROTEIN U1A); RNA binding | chr3:18837457-18840473
REVERSE
Length = 427
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 2 ASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQS 61
A+ D FV L + + +++ F +YG I +V D+ T + +G+ F+ + +
Sbjct: 132 ATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRD 191
Query: 62 MKDAIEGMNGQDIDGRNVTVN 82
MK A + +GQ IDGR V V+
Sbjct: 192 MKAAYKQADGQKIDGRRVLVD 212
>AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA
binding | chr1:26994439-26997109 REVERSE
Length = 668
Score = 52.8 bits (125), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
F+ L + D++ L + FS++G I+ KV D GRS+G+GFV F E++ + AI+ +N
Sbjct: 135 FIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 71 GQDIDGRNVTV 81
G ++ + V V
Sbjct: 194 GMLLNDKQVFV 204
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 19 TDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGRN 78
TD E L+K F YG+I + V+ D ++G SR FGFV F S ++ A+E MNG +
Sbjct: 237 TDDE-LKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDV 294
Query: 79 VTVNEAQ 85
+ V AQ
Sbjct: 295 LYVGRAQ 301
Score = 44.3 bits (103), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 18 ATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGR 77
+ + E L++ FS YG + KV+ + + G SRGFGFV +++ + A++ MNG+ I +
Sbjct: 338 SVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRK 396
Query: 78 NVTVNEAQ 85
+ V AQ
Sbjct: 397 PLYVALAQ 404
>AT5G59860.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:24130688-24131675 FORWARD
Length = 157
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 14 GLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQD 73
GL+ T + L + F+ + ++++ D++T R +GFGF+TF SE + A++ +NG+
Sbjct: 77 GLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 74 IDGRNVTVNEAQ 85
++GR + V A+
Sbjct: 132 VNGRLIFVETAK 143
>AT1G11650.1 | Symbols: ATRBP45B | ATRBP45B; RNA binding |
chr1:3914895-3917301 FORWARD
Length = 306
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 7 EYRCFVGGLAW-ATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
+Y FVG LA TD LE ++Y + +KVV DR TGR++G+GFV F+ E A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213
Query: 66 IEGMNGQDIDGRNVTVNEA 84
+ MNG R + + A
Sbjct: 214 MTEMNGVPCSTRPMRIGPA 232
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 3 SADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSM 62
+AD ++G L + D L F+ GE+V +KV+ +++TG+ G+GF+ FAS +
Sbjct: 57 TADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAA 116
Query: 63 KDAIEGMNGQDID 75
+ ++ N I
Sbjct: 117 ERVLQTFNNAPIP 129
>AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9180792-9186145 REVERSE
Length = 1003
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 12 VGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNG 71
V GL ++ + LE+AFS G + +V ++ + RGF FV FA ++ + AIE NG
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
Query: 72 QDIDGRNVTVNEA 84
+ GR +TV +A
Sbjct: 84 STVGGRRITVKQA 96
>AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA
binding / translation initiation factor |
chr3:5558682-5560999 REVERSE
Length = 537
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V L+ + + L + F YG+IV +KV+ E GRS+GFGFV F++ + K A +N
Sbjct: 307 YVKNLSESMNETRLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 71 GQDIDGRNVTVNEAQ 85
G +DG+ + V A+
Sbjct: 366 GFLVDGKPIVVRVAE 380
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V L + S LE+ F +G I+ KVV E G+S+GFGFV F +EQS A ++
Sbjct: 115 YVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 71 GQDIDGRNVTV 81
G + G+ + V
Sbjct: 173 GSMVYGKKLFV 183
Score = 44.3 bits (103), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 1 MASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQ 60
MA +V L + L FS YG V S VV GRSRGFGFV F + +
Sbjct: 195 MAGNQDSTNVYVKNLIETVTDDCLHTLFSQYG-TVSSVVVMRDGMGRSRGFGFVNFCNPE 253
Query: 61 SMKDAIEGMNGQDIDGRNVTVNEA 84
+ K A+E + G + + + V +A
Sbjct: 254 NAKKAMESLCGLQLGSKKLFVGKA 277
>AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding |
chr1:3914895-3917941 FORWARD
Length = 405
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 7 EYRCFVGGLAW-ATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
+Y FVG LA TD LE ++Y + +KVV DR TGR++G+GFV F+ E A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213
Query: 66 IEGMNGQDIDGRNVTVNEA 84
+ MNG R + + A
Sbjct: 214 MTEMNGVPCSTRPMRIGPA 232
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 3 SADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSM 62
+AD ++G L + D L F+ GE+V +KV+ +++TG+ G+GF+ FAS +
Sbjct: 57 TADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAA 116
Query: 63 KDAIEGMNGQDID 75
+ ++ N I
Sbjct: 117 ERVLQTFNNAPIP 129
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
FVGGL + + L+ FS YGEIV K+ + GFV F+ + ++A+ +N
Sbjct: 264 FVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC------GFVQFSEKSCAEEALRMLN 317
Query: 71 GQDIDGRNVTVN 82
G + G V ++
Sbjct: 318 GVQLGGTTVRLS 329
>AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTEIN
2); RNA binding | chr4:16337714-16339896 FORWARD
Length = 443
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
+V LA +T + L+ AF YG+I + V+ D E G+S+GFGFV F + A+E +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 89
Query: 70 NGQDIDGRNVTVNEAQ 85
NG D + V AQ
Sbjct: 90 NGHKFDDKEWYVGRAQ 105
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
+V L + E L++ FS +G + SKV+ D G S+G GFV FA+ + +A+ +
Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQL 192
Query: 70 NGQDIDGRNVTVNEAQ 85
+G+ I+ + + V AQ
Sbjct: 193 SGKMIESKPLYVAIAQ 208
>AT4G03110.1 | Symbols: | RNA-binding protein, putative |
chr4:1376612-1379275 REVERSE
Length = 441
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 24 LEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGRNVTV 81
L AF ++G ++ +KV D+ TG S+ FGFV++ S+ + ++AI+ MNG+ + G+ + V
Sbjct: 365 LAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKV 422
>AT1G03457.2 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 438
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
F+ + + + L F +G+++ +KV D+ TG S+ FGF+++ S+ + ++AI MN
Sbjct: 342 FIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMN 401
Query: 71 GQDIDGRNVTV 81
G + G+ + V
Sbjct: 402 GCQLSGKKLKV 412
>AT1G03457.1 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 429
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
F+ + + + L F +G+++ +KV D+ TG S+ FGF+++ S+ + ++AI MN
Sbjct: 333 FIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMN 392
Query: 71 GQDIDGRNVTV 81
G + G+ + V
Sbjct: 393 GCQLSGKKLKV 403
>AT5G47620.3 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19319774-19321332
REVERSE
Length = 371
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ FVGGLA + +K F+ +G I D V+ D T R RGFGF+++ SE+++ D +
Sbjct: 47 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV-DKVLQ 105
Query: 69 MNGQDIDGRNVTVNEA 84
+++G+ V V A
Sbjct: 106 KTFHELNGKMVEVKLA 121
>AT3G10400.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:3232641-3233426 FORWARD
Length = 261
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V L ++ + + FST+G++ V+ DR T +SRG FV + S + A M+
Sbjct: 60 YVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMD 119
Query: 71 GQDIDGRNVTVNEA 84
+ ++GR +TV+ A
Sbjct: 120 AKILNGRKLTVSIA 133
>AT5G19350.1 | Symbols: | RNA-binding protein 45 (RBP45), putative
| chr5:6518980-6521297 FORWARD
Length = 425
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFST-YGEIVDSKVVNDRETGRSRGFGFVTFASEQSM 62
A ++ FVG LA L++ F Y + +KVV D TGRS+G+GFV FA E
Sbjct: 112 AGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESER 171
Query: 63 KDAIEGMNGQDIDGRNVTVNEA 84
A+ MNG R + ++ A
Sbjct: 172 NRAMAEMNGLYCSTRPMRISAA 193
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
++G L + D L FS GE+V KV+ ++ TG+ G+GF+ F S + + ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 70 NGQDIDGRNVT 80
NG + G +T
Sbjct: 86 NGTQMPGTELT 96
>AT5G19350.2 | Symbols: | RNA-binding protein 45 (RBP45), putative
| chr5:6518980-6521297 FORWARD
Length = 421
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFST-YGEIVDSKVVNDRETGRSRGFGFVTFASEQSM 62
A ++ FVG LA L++ F Y + +KVV D TGRS+G+GFV FA E
Sbjct: 112 AGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESER 171
Query: 63 KDAIEGMNGQDIDGRNVTVNEA 84
A+ MNG R + ++ A
Sbjct: 172 NRAMAEMNGLYCSTRPMRISAA 193
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
++G L + D L FS GE+V KV+ ++ TG+ G+GF+ F S + + ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 70 NGQDIDGRNVT 80
NG + G +T
Sbjct: 86 NGTQMPGTELT 96
>AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); RNA
binding / translation initiation factor |
chr2:15368555-15371477 REVERSE
Length = 609
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V + A E L K FS G I +K++ D E G+S+GFGFV F++ + DA++ +
Sbjct: 307 YVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 71 GQDIDGRNVTVNEAQ 85
GQ G+ + V AQ
Sbjct: 366 GQMFHGKPLYVAIAQ 380
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
FV L + + L+ F +G IV KV E G+SRG+GFV F E + AI+ +N
Sbjct: 115 FVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 71 GQDIDGRNVTVNE 83
+ + + V +
Sbjct: 174 STIVADKEIYVGK 186
>AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); RNA
binding / translation initiation factor |
chr1:12433334-12434713 REVERSE
Length = 407
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 18 ATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGR 77
ATD++ L++ F +GEI + V+ D E G+SR FGFV F ++ AIE MNG +D +
Sbjct: 130 ATDAD-LKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEK 187
Query: 78 NVTVNEAQ 85
+ V AQ
Sbjct: 188 ELHVGRAQ 195
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V L + D+ LE+ FS +G I KV+ G S+G GFV F++ + A+ MN
Sbjct: 226 YVKNLDDSVDNTKLEELFSEFGTITSCKVM-VHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 71 GQDIDGRNVTVNEAQA 86
G+ + + + V+ AQ
Sbjct: 285 GKMVGNKPIYVSLAQC 300
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
FV L + D++ L FS +G+++ KV D +G S+G+GFV F S+ S+ A N
Sbjct: 34 FVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 71 GQDIDGRNVTV 81
G I +++ V
Sbjct: 93 GTLIRNQHIHV 103
>AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636161 FORWARD
Length = 220
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%)
Query: 3 SADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSM 62
S D+ V L E L K+F +G + D + D TG RGFGFV F
Sbjct: 31 SRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA 90
Query: 63 KDAIEGMNGQDIDGRNVTV 81
DA M+G + GR +TV
Sbjct: 91 ADAKHHMDGYLLLGRELTV 109
>AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636240 FORWARD
Length = 222
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%)
Query: 3 SADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSM 62
S D+ V L E L K+F +G + D + D TG RGFGFV F
Sbjct: 31 SRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA 90
Query: 63 KDAIEGMNGQDIDGRNVTV 81
DA M+G + GR +TV
Sbjct: 91 ADAKHHMDGYLLLGRELTV 109
>AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA
binding / translation initiation factor |
chr1:18420408-18423421 FORWARD
Length = 671
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
F+ L + D + L + FS +G I+ KV D +G+S+G+GFV + ++++ + AI+ +N
Sbjct: 136 FIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 71 GQDIDGRNVTV 81
G ++ + V V
Sbjct: 195 GMLLNDKQVYV 205
Score = 46.6 bits (109), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 11 FVGGL-AWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
+VG L A TDS+ E AF+ G++V +V D T RS G+G+V +A+ Q A+ +
Sbjct: 48 YVGDLDATVTDSQLFE-AFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 70 NGQDIDGRNVTV 81
N ++GR + V
Sbjct: 107 NFMALNGRAIRV 118
Score = 46.2 bits (108), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V L+ + E L K F +G ++ D E G+S+GFGFV F + A++ +N
Sbjct: 227 YVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALN 285
Query: 71 GQDIDGRNVTVNEAQ 85
G+ D + V +AQ
Sbjct: 286 GKTFDDKEWFVGKAQ 300
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V L + + L + F+ +G I KV+ D +G SRG GFV F++ + AI MN
Sbjct: 330 YVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 71 GQDIDGRNVTVNEAQ 85
G+ I + + V AQ
Sbjct: 389 GKMIVTKPLYVALAQ 403
>AT2G44710.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:18439977-18443704 FORWARD
Length = 809
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 7 EYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
E+ FVG L E L+K F GE+ + +++ + +T +S+G F+ FA+ + K A+
Sbjct: 213 EFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAV 272
Query: 67 EGMNGQDIDGRNVTVNEAQ 85
+ + I+G+ V +Q
Sbjct: 273 KELKSPMINGKKCGVTASQ 291
>AT5G19030.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357572-6359026 REVERSE
Length = 126
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
FV G + + L+K FS +G++ + K++ + T +S G+G+V F S++ + A+E MN
Sbjct: 61 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
Query: 71 GQ 72
G+
Sbjct: 121 GK 122
>AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
F+GGL E L GEI + +++ DR++G S+G+ FV F ++ + AIE +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 70 NGQDIDGRNV 79
+ ++ G+ +
Sbjct: 178 HSKEFKGKTI 187
>AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
F+GGL E L GEI + +++ DR++G S+G+ FV F ++ + AIE +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 70 NGQDIDGRNV 79
+ ++ G+ +
Sbjct: 178 HSKEFKGKTI 187
>AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEIN
47C'); RNA binding | chr1:17435122-17437245 FORWARD
Length = 434
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 10 CFVGGLAWATDSEGLEKAFS-TYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
FVG LA L + FS Y + +KVV D TGRS+G+GFV F E A+
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 69 MNGQDIDGRNVTVNEA 84
MNG R + + A
Sbjct: 261 MNGVKCSSRAMRIGPA 276
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
FVGGL + E L++ FS +GEIV K+ +G GFV F + + ++A+E +
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKL 361
Query: 70 NGQDIDGRNVTV 81
NG I + V +
Sbjct: 362 NGTVIGKQTVRL 373
>AT4G16280.3 | Symbols: FCA | FCA; RNA binding |
chr4:9208580-9214428 REVERSE
Length = 533
Score = 47.0 bits (110), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 6 VEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
+E++ FVG L + +E+ F +G + D ++ D E +SRG GFV ++S+++ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAA 267
Query: 66 IEGMNG 71
I+G+NG
Sbjct: 268 IDGLNG 273
>AT4G16280.2 | Symbols: FCA | FCA; RNA binding |
chr4:9207180-9214428 REVERSE
Length = 747
Score = 47.0 bits (110), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 6 VEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
+E++ FVG L + +E+ F +G + D ++ D E +SRG GFV ++S+++ A
Sbjct: 209 LEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAA 267
Query: 66 IEGMNG 71
I+G+NG
Sbjct: 268 IDGLNG 273
>AT1G47490.2 | Symbols: ATRBP47C | ATRBP47C; RNA binding |
chr1:17427241-17428554 FORWARD
Length = 310
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 10 CFVGGLAWATDSEGLEKAFS-TYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
FVG L+ L + FS Y + +KVV D TGRS+G+GFV F E A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 69 MNGQDIDGRNVTVNEA 84
MNG R + + A
Sbjct: 259 MNGVKCSSRAMRIGPA 274
>AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C; RNA binding |
chr1:17427241-17429622 FORWARD
Length = 432
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 10 CFVGGLAWATDSEGLEKAFS-TYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
FVG L+ L + FS Y + +KVV D TGRS+G+GFV F E A+
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 69 MNGQDIDGRNVTVNEA 84
MNG R + + A
Sbjct: 259 MNGVKCSSRAMRIGPA 274
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
FVGGL + E L++ F+ +GEIV K+ +G GFV F + + ++A+E +
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKL 359
Query: 70 NGQDIDGRNVTV 81
NG I + V +
Sbjct: 360 NGTVIGKQTVRL 371
>AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:7349951-7354134 REVERSE
Length = 561
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R +VG L + L K F ++G + +V D ETG +GFGFV FA + ++A+
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL-N 343
Query: 69 MNGQ-DIDGRNVTVN 82
+NGQ +I GR + V+
Sbjct: 344 LNGQLEIAGRAIKVS 358
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 28 FSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGRNVTVNEAQA 86
FS G++ D +++ DR + RSRG G+V F S+ AI ++GQ + G+ V V ++A
Sbjct: 202 FSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKPSEA 259
>AT5G08695.1 | Symbols: | nucleic acid binding / nucleotide binding
| chr5:2829342-2834190 FORWARD
Length = 690
Score = 45.8 bits (107), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R FV GL ++T E L + FS +G+I + +V D++T RG FV + +S K A++
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDK 287
Query: 69 MNGQDIDGRNVTVNEAQ 85
++ GR + + A+
Sbjct: 288 LDKLPFQGRTLHILPAK 304
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1/PARL1 (PARALLEL
1); nucleic acid binding | chr1:18101854-18105090
FORWARD
Length = 557
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
F L++ + +E F GE+VD + +R+ G RGFG V FAS + + A+E
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE-F 357
Query: 70 NGQDIDGRNVTVNEAQ 85
+G+ + GR + ++ AQ
Sbjct: 358 HGRPLLGREIRLDIAQ 373
>AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN
47B); RNA binding | chr3:6611404-6613829 REVERSE
Length = 435
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
FVGG+ E L + FS +GE+V K+ +G GFV FA +S +DAIE +
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP------VGKGCGFVQFADRKSAEDAIESL 376
Query: 70 NGQDIDGRNV 79
NG I G+N
Sbjct: 377 NGTVI-GKNT 385
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 10 CFVGGLAWATDSEGLEKAFS-TYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
FVG L+ L + FS Y + +KVV D TGRS+G+GFV F E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 69 MNGQDIDGRNVTV 81
MNG R + V
Sbjct: 264 MNGAYCSNRQMRV 276
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
+VG L D L FS GE+ KV+ ++ T +S G+GFV F S + ++ ++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 70 NG 71
+G
Sbjct: 170 SG 171
>AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633
FORWARD
Length = 816
Score = 44.7 bits (104), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R FV L + E L + FST+G+I + +V D+ET RSRG ++ + + A+E
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354
Query: 69 MNGQDIDGR 77
++ GR
Sbjct: 355 LDNSSFQGR 363
>AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3081647-3085180 REVERSE
Length = 527
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
+ +VG L + L + F +G + ++ D ETG+ +GFGF+ F + K A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 69 MNGQ-DIDGRNVTVN 82
+NG+ +I GR + V+
Sbjct: 326 LNGKLEIAGRTIKVS 340
>AT2G37340.1 | Symbols: ATRSZ33, RSZ33 | RSZ33
(ARGININE/SERINE-RICH ZINC KNUCKLE-CONTAINING PROTEIN
33); nucleic acid binding / nucleotide binding / zinc
ion binding | chr2:15677451-15679410 REVERSE
Length = 290
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 1 MASADVEY---RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFA 57
M D Y R +VG L+ T + LE+ FS YG + D + D + FV F
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFG 52
Query: 58 SEQSMKDAIEGMNGQDIDGRNVTV 81
+ DA ++G+D DG +TV
Sbjct: 53 DPRDADDARHYLDGRDFDGSRITV 76
>AT3G52660.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19533576-19535713 FORWARD
Length = 471
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 11 FVGGLAWATD-SEGLEKAFS-TYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
++GG+ TD +EG K F + GE+ + +++ ++++G +G+ FVTF S+ +AI+
Sbjct: 95 YLGGIP--TDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 69 MNGQDIDGRNVTVNEAQA 86
+N D G+ + + QA
Sbjct: 153 LNNTDFRGKRIKCSTTQA 170
>AT3G52660.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19533576-19535713 FORWARD
Length = 471
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 11 FVGGLAWATD-SEGLEKAFS-TYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
++GG+ TD +EG K F + GE+ + +++ ++++G +G+ FVTF S+ +AI+
Sbjct: 95 YLGGIP--TDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 69 MNGQDIDGRNVTVNEAQA 86
+N D G+ + + QA
Sbjct: 153 LNNTDFRGKRIKCSTTQA 170
>AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA
RNA-BINDING PROTEIN 47A); RNA binding |
chr1:18360904-18363818 REVERSE
Length = 445
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 11 FVGGLAW-ATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
FVG LA +D+ LE Y + +KVV D TGRS+G+GFV F E A+ M
Sbjct: 216 FVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEM 275
Query: 70 NGQDIDGRNVTV 81
NG R + V
Sbjct: 276 NGAFCSSRQMRV 287
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
FVGGL E L + FS +GE+V K+ +G GFV FA+ QS ++AI +N
Sbjct: 330 FVGGLDADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIGNLN 383
Query: 71 GQDIDGRNV 79
G I G+N
Sbjct: 384 GTVI-GKNT 391
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+VG L D L FS E+ KV+ +++T +S G+GFV F S + ++A++ +
Sbjct: 122 WVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFS 181
Query: 71 G 71
G
Sbjct: 182 G 182
>AT1G51510.1 | Symbols: Y14 | Y14; RNA binding / protein binding |
chr1:19106740-19108421 REVERSE
Length = 202
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
V G+ T E + AF +GEI + + DR +G +G+ + + ++ + AI M
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 70 NGQDIDGRNVTVN 82
NG ++ +NV+V+
Sbjct: 157 NGAELLTQNVSVD 169
>AT1G02840.2 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor
2); RNA binding | chr1:626918-628995 FORWARD
Length = 285
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
+VG L +E FS YG +V ++ + R G+ FV F + +DAI G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 70 NGQDIDGRNVTVNEAQ 85
+G D DG + V A
Sbjct: 66 DGYDFDGHRLRVELAH 81
>AT1G07350.2 | Symbols: | transformer serine/arginine-rich
ribonucleoprotein, putative | chr1:2258814-2259584
REVERSE
Length = 129
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V GL+ LE F+ G++ D +V D T SRGFGF++ S I ++
Sbjct: 48 YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLD 107
Query: 71 GQDIDGRNVTVNE 83
+ GR +TV +
Sbjct: 108 HSVLQGRVITVEK 120
>AT5G06000.1 | Symbols: ATEIF3G2, EIF3G2 | EIF3G2 (eukaryotic
translation initiation factor 3G2); RNA binding /
translation initiation factor | chr5:1808170-1809743
FORWARD
Length = 308
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 1 MASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQ 60
M S E V L+ T L + F +G + V D++T SRGFGFV+F S +
Sbjct: 199 MRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSRE 258
Query: 61 SMKDAIEGMNG 71
+ AI +NG
Sbjct: 259 DAQRAINKLNG 269
>AT1G02840.3 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor
2); RNA binding | chr1:626918-629583 FORWARD
Length = 303
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+VG L +E FS YG +V ++ + R G+ FV F + +DAI G +
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQ---IDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 71 GQDIDGRNVTVNEAQ 85
G D DG + V A
Sbjct: 67 GYDFDGHRLRVELAH 81
>AT1G02840.1 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor
2); RNA binding | chr1:626918-629583 FORWARD
Length = 303
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+VG L +E FS YG +V ++ + R G+ FV F + +DAI G +
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQ---IDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 71 GQDIDGRNVTVNEAQ 85
G D DG + V A
Sbjct: 67 GYDFDGHRLRVELAH 81
>AT3G53500.2 | Symbols: RSZ32 | RSZ32; nucleic acid binding |
chr3:19845535-19847485 REVERSE
Length = 284
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 1 MASADVEY---RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFA 57
M D Y R +VG L+ T + LE+ FS YG + D + D + FV F+
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFS 52
Query: 58 SEQSMKDAIEGMNGQDIDGRNVTV 81
+ DA ++G+D DG +TV
Sbjct: 53 DPRDADDARYYLDGRDFDGSRITV 76
>AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic
translation initiation factor 3G1); RNA binding /
translation initiation factor | chr3:3578542-3580372
FORWARD
Length = 294
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 12 VGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNG 71
V L+ T L + F +G + V D++TG SRGFGFV F S + + AI +NG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 72 QDID 75
D
Sbjct: 277 YGYD 280
>AT1G60900.1 | Symbols: | U2 snRNP auxiliary factor large subunit,
putative | chr1:22427673-22431471 FORWARD
Length = 589
Score = 43.1 bits (100), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R FVGGL + + + ++G + +V DRETG S+G+ F + A
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 69 MNGQDIDGRNVTVNEA 84
+NG + + +TV A
Sbjct: 436 LNGIKMGDKTLTVRRA 451
>AT1G07350.1 | Symbols: | transformer serine/arginine-rich
ribonucleoprotein, putative | chr1:2257730-2260099
REVERSE
Length = 382
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
+V GL+ LE F+ G++ D +V D T SRGFGF++ S I ++
Sbjct: 78 YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLD 137
Query: 71 GQDIDGRNVTVNEA 84
+ GR +TV +A
Sbjct: 138 HSVLQGRVITVEKA 151
>AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1071313 FORWARD
Length = 278
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
+VG L +E FS YG +V ++ + R G+ FV F + DAI G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 70 NGQDIDGRNVTVNEAQ 85
+G D DG ++ V A
Sbjct: 66 DGYDFDGHHLRVELAH 81
>AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing factor
30a); RNA binding | chr3:4429571-4431609 REVERSE
Length = 262
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 4 ADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMK 63
+D+ V L E L + F +G + D + D TG RGFGF+ F
Sbjct: 33 SDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAA 92
Query: 64 DAIEGMNGQDIDGRNVTV 81
+A M+G + GR +TV
Sbjct: 93 EAKHQMDGYLLLGRELTV 110
>AT4G02430.1 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1070543 FORWARD
Length = 178
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
+VG L +E FS YG +V ++ + R G+ FV F + DAI G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQ---IDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 70 NGQDIDGRNVTVNEAQ 85
+G D DG ++ V A
Sbjct: 66 DGYDFDGHHLRVELAH 81
>AT5G41690.1 | Symbols: | RNA binding | chr5:16687354-16691417
REVERSE
Length = 567
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 6 VEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDA 65
VE FV L+ T + F+ GE+V +++ + E G+ G+GFV FAS K A
Sbjct: 183 VEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKA 241
Query: 66 IEGMNGQDIDGRNVTVNEAQ 85
+E NG+ + + ++ A+
Sbjct: 242 LENKNGEYLHDHKIFIDVAK 261
>AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795072-5797190 REVERSE
Length = 244
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 8 YRCFVGGLAWATDSEGLEKAF-STYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
+ FV LA+ ++ L++ F + G +V ++V+ RS G+GFV+F +++ + A+
Sbjct: 129 FNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAAL 188
Query: 67 EGMNGQDIDGRNVTVNEAQ 85
G+D GR + + +++
Sbjct: 189 IEFQGKDFLGRPIRLAKSK 207
>AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795072-5797312 REVERSE
Length = 304
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 8 YRCFVGGLAWATDSEGLEKAF-STYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAI 66
+ FV LA+ ++ L++ F + G +V ++V+ RS G+GFV+F +++ + A+
Sbjct: 189 FNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAAL 248
Query: 67 EGMNGQDIDGRNVTVNEAQ 85
G+D GR + + +++
Sbjct: 249 IEFQGKDFLGRPIRLAKSK 267
>AT4G36690.2 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding |
chr4:17294595-17297613 REVERSE
Length = 542
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R FVGGL + + + ++G + +V DRETG S+G+ F + A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 69 MNGQDIDGRNVTVNEA 84
+NG + + +TV A
Sbjct: 420 LNGIKMGDKTLTVRRA 435
>AT4G36690.3 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding |
chr4:17294426-17297613 REVERSE
Length = 565
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R FVGGL + + + ++G + +V DRETG S+G+ F + A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 69 MNGQDIDGRNVTVNEA 84
+NG + + +TV A
Sbjct: 420 LNGIKMGDKTLTVRRA 435
>AT1G13190.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:4499630-4501351 FORWARD
Length = 573
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
FVG L W T +E S YG + + K ++R +G+S+G+ V F + EGM
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 70 NGQDIDGRNVTV 81
NG +G+ V
Sbjct: 264 NGFIFNGKACVV 275
>AT3G18610.1 | Symbols: ATRANGAP1 | ATRANGAP1 (RAN GTPASE-ACTIVATING
PROTEIN 1); nucleic acid binding | chr3:6404276-6407828
REVERSE
Length = 636
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 11 FVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
F G L++ +E F GE+VD ++ + + G +G+G + FAS + + A+E MN
Sbjct: 387 FAGNLSYQIARSDIENFFKEAGEVVDVRL-SSFDDGSFKGYGHIEFASPEEAQKALE-MN 444
Query: 71 GQDIDGRNVTVNEA 84
G+ + GR+V ++ A
Sbjct: 445 GKLLLGRDVRLDLA 458
Score = 41.2 bits (95), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 3 SADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSM 62
S + R F L + L FS GE+ V DRETG SRGF ++ S
Sbjct: 478 SRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS--GF 535
Query: 63 KDAIEGMNGQDIDGRNVTVNEAQ 85
+A++ ++G +I G N+ V E++
Sbjct: 536 DEALQ-LSGSEIGGGNIHVEESR 557
>AT3G55460.1 | Symbols: SCL30 | SCL30 (SC35-like splicing factor
30); RNA binding | chr3:20572001-20574479 FORWARD
Length = 262
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
V + E L + F +G + D + D +G+ RGF FV F +A M
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 70 NGQDIDGRNVTV 81
N + GR +TV
Sbjct: 109 NRRSFAGREITV 120
>AT4G36690.1 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding |
chr4:17294143-17297613 REVERSE
Length = 573
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 9 RCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEG 68
R FVGGL + + + ++G + +V DRETG S+G+ F + A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 69 MNGQDIDGRNVTVNEA 84
+NG + + +TV A
Sbjct: 420 LNGIKMGDKTLTVRRA 435
>AT3G54230.1 | Symbols: | nucleic acid binding |
chr3:20084850-20091120 FORWARD
Length = 1007
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 12 VGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMN 70
V GL D E L FS + I D ++V D+ T SRGF FV F S + A+E N
Sbjct: 436 VRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATN 494
>AT3G54770.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20284841-20286709 REVERSE
Length = 218
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 28 FSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGRNVTVNEA 84
F YG+I+++ +++D+ T RS+G+GFVTF ++ A E + I+GR N A
Sbjct: 5 FIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED-STPIINGRRANCNLA 60
>AT5G44200.2 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTEIN
20) | chr5:17819289-17821102 REVERSE
Length = 257
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
++G +++ T E L + FS GEI + D+ T GF FV F S + +DA++ +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 70 NGQDIDGRNVTVN 82
+G +D R + V+
Sbjct: 96 SGTILDDRPIRVD 108
>AT5G44200.1 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTEIN
20); RNA binding | chr5:17819289-17821102 REVERSE
Length = 257
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 10 CFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGM 69
++G +++ T E L + FS GEI + D+ T GF FV F S + +DA++ +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 70 NGQDIDGRNVTVN 82
+G +D R + V+
Sbjct: 96 SGTILDDRPIRVD 108
>AT5G05720.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:1716872-1719542 FORWARD
Length = 451
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 22 EGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGRNVTV 81
E L FS GEI D K+ + G+SR F ++ F +EQ +DAI +N ID ++V
Sbjct: 17 ERLRDVFSRKGEIADVKL-KRKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFIDTYRISV 75
Query: 82 NEA 84
A
Sbjct: 76 EVA 78