Miyakogusa Predicted Gene

chr2.LjT40P05.10.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.LjT40P05.10.nd + phase: 0 
         (684 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25610.1 | Symbols:  | zinc finger (C2H2 type) family protein...   360   1e-99

>AT4G25610.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr4:13063810-13066869 FORWARD
          Length = 586

 Score =  360 bits (924), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 247/672 (36%), Positives = 347/672 (51%), Gaps = 98/672 (14%)

Query: 19  ERIDTDAMIRTDNAIRQVAGTEPVIYFPRAGVNPVQWIQVLHALDQQGGSNSYSGWPLLS 78
           E +  D     D  IR+  G +P + FPR    PVQ  Q+LH L++        GWPLL+
Sbjct: 2   ELVKQDGNDSLDMLIRRAVGKDPFLSFPRPENTPVQLFQLLHTLER-------PGWPLLT 54

Query: 79  SLRCQLQKCDKCSQEFCSPVNYRRHISVHHRWRKLDKDSTKVRDLLGAYWDKLSVEEAKE 138
            L+ Q+QKC+KCS+EFCSPVN+RRH  +H R RK +KD  K RD LGA+W+KLS  +AKE
Sbjct: 55  PLKIQMQKCEKCSREFCSPVNFRRHNRMHRRQRKPEKDFGKERDALGAFWNKLSATDAKE 114

Query: 139 VVSFENVMLKEVPGSSILESLMTLVQKQGFSLLPQYYLRAGAALLDIVQSKPSSFPISSL 198
           ++S +++ML+++PG+S+   LM+L++K G++ LPQYYLRAG+ LLD++Q++P   PISS 
Sbjct: 115 ILSVKSMMLEDIPGASVESGLMSLIEKPGYTALPQYYLRAGSGLLDLLQARPPRLPISSQ 174

Query: 199 ELFSILDDASEKTCLWGTAVSMQKHLLDGGAGKIGLEPENVVAWTSFLLEQKLVEAWLSD 258
           ELFSILDDASEKT L   A  MQK++ DG  GK  LE +NVVA  SFLLEQ+L++AWL+D
Sbjct: 175 ELFSILDDASEKTFLSSEAAPMQKYIFDGEIGKTVLEAKNVVACASFLLEQRLIKAWLAD 234

Query: 259 RDAEALRCQKQLVXXXXXXXXXXXXILXXXXXXXXXXXXXXXXXXXHKDVEEIKKNIDSA 318
           +DAEALRCQ  LV            +                     KD +E +      
Sbjct: 235 KDAEALRCQNLLVEEEEAARRRKAEL-LERKKRKKLRQKEQREKDQKKDAKEDESTTSEE 293

Query: 319 VKDLSRAEASLD-RYNSEGHDLDTFA-DNNTPLHVPFQCSDTNEGIDEITQSRHDFGSD- 375
            +  +   + L    +SE    D+   D+++ L  P Q  +TN G +  TQ     G D 
Sbjct: 294 QQYPAEPSSPLSVASDSEAQTPDSLPIDDSSSLEEP-QVLETNNGRNSETQVPMVDGLDN 352

Query: 376 -QNIERQSARGHNHRRSAVARWQEPPKLQWAVANGLHKNLHTP----ISKNEVNTQKGIG 430
            QN+ER+S R    R             Q  + NG H + H P    + KN      G  
Sbjct: 353 GQNMERRSGRRQMQRS------------QQGMPNGFHAD-HAPNLGGMRKN------GTN 393

Query: 431 RDQKAAATVNGSKAWSQKPKSEIDRVVLKTKAEKEPDLVKNHVVLIGSISVNLGNCRKSE 490
           RD +A    N +K WS+  KS+  +++ +  A  + D  K+   ++GS+SV++ N    E
Sbjct: 394 RDARA----NTTKVWSR--KSDNPKLISQHAAVTQQDQTKSSEFIVGSLSVSIRNS--GE 445

Query: 491 GNVVESQEDCMVKNVAEQNSSQDKPMEPDLVVTGNNQLKVRHWRPVIQLETKDTLPVQNG 550
            N  +  E        E             V   + Q  V+ WR           PV + 
Sbjct: 446 HNQTKCSEGERRTKTVE-------------VKPASEQSTVKIWR-----------PVSSQ 481

Query: 551 GTGVDVVHGNGDCRN-LSGPTSFENNNSHPEGRVNRGSLQSSIHEAKAFLAQRWKEALLS 609
           G     V+GN D  +  S PT+ E  N+H        SLQ + HEAKAFLA+RWKEA  +
Sbjct: 482 GRKTSTVNGNTDKEDKRSNPTTPEVKNAH------HISLQFNNHEAKAFLAKRWKEATSA 535

Query: 610 NHVKLVVSPDSKSPRCQEIQHSNIAACNSSDERCNIIANADNRLPATXXXXXXXXXXXXE 669
            HV LV+S           Q ++I+  N++ E  N +  A ++L               E
Sbjct: 536 EHVTLVLS-----------QETDISG-NNTHESSNGVITARSKL-----------RTKAE 572

Query: 670 NGNKTKYIPKQR 681
            G K KY+PKQR
Sbjct: 573 KGTKVKYVPKQR 584