Miyakogusa Predicted Gene

chr2.LjT16L14.40.nc

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.LjT16L14.40.nc + phase: 0 
         (221 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73350.2 | Symbols:  | similar to Os02g0637900 [Oryza sativa ...   164   3e-41
AT1G73350.1 | Symbols:  | similar to Os02g0637900 [Oryza sativa ...   156   1e-38
AT1G73350.3 | Symbols:  | similar to Os02g0637900 [Oryza sativa ...   131   4e-31

>AT1G73350.2 | Symbols:  | similar to Os02g0637900 [Oryza sativa
           (japonica cultivar-group)] (GB:NP_001047530.1); similar
           to unknown [Picea sitchensis] (GB:ABK22187.1) |
           chr1:27579344-27580787 REVERSE
          Length = 210

 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 92/137 (67%), Gaps = 2/137 (1%)

Query: 1   MAGREVREYTNLSXXXXXXXXXXXXXXXXXXVTFQRMVAKMQEVAGERGGYLHGRGALDS 60
           MAGREV+EYTNLS                  VTFQRMVAKMQEVAGERGGYLHGRGALDS
Sbjct: 1   MAGREVKEYTNLSDPKDKKSGKGKIDDED--VTFQRMVAKMQEVAGERGGYLHGRGALDS 58

Query: 61  DDLLYLKEQMXXXXXXXXXXXXXXXXXXXXXXXXXSLVDSSPASVPLPLRVEPKPKSGIR 120
           DDLLYLKEQM                         +  DSSPAS+PLPLRVEPKPKSGIR
Sbjct: 59  DDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKKAATQADSSPASIPLPLRVEPKPKSGIR 118

Query: 121 QQDLLKKVVEIKPKRPR 137
           QQDLL+KVVE+KPKRP+
Sbjct: 119 QQDLLRKVVEVKPKRPK 135


>AT1G73350.1 | Symbols:  | similar to Os02g0637900 [Oryza sativa
           (japonica cultivar-group)] (GB:NP_001047530.1); similar
           to unknown [Picea sitchensis] (GB:ABK22187.1) |
           chr1:27579344-27580787 REVERSE
          Length = 208

 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/137 (61%), Positives = 90/137 (65%), Gaps = 4/137 (2%)

Query: 1   MAGREVREYTNLSXXXXXXXXXXXXXXXXXXVTFQRMVAKMQEVAGERGGYLHGRGALDS 60
           MAGREV+EYTNLS                  VTFQRMVAKMQEVAGERGGYLHGRG  DS
Sbjct: 1   MAGREVKEYTNLSDPKDKKSGKGKIDDED--VTFQRMVAKMQEVAGERGGYLHGRG--DS 56

Query: 61  DDLLYLKEQMXXXXXXXXXXXXXXXXXXXXXXXXXSLVDSSPASVPLPLRVEPKPKSGIR 120
           DDLLYLKEQM                         +  DSSPAS+PLPLRVEPKPKSGIR
Sbjct: 57  DDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKKAATQADSSPASIPLPLRVEPKPKSGIR 116

Query: 121 QQDLLKKVVEIKPKRPR 137
           QQDLL+KVVE+KPKRP+
Sbjct: 117 QQDLLRKVVEVKPKRPK 133


>AT1G73350.3 | Symbols:  | similar to Os02g0637900 [Oryza sativa
           (japonica cultivar-group)] (GB:NP_001047530.1); similar
           to unknown [Picea sitchensis] (GB:ABK22187.1) |
           chr1:27579344-27580140 REVERSE
          Length = 172

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 70/97 (72%)

Query: 41  MQEVAGERGGYLHGRGALDSDDLLYLKEQMXXXXXXXXXXXXXXXXXXXXXXXXXSLVDS 100
           MQEVAGERGGYLHGRGALDSDDLLYLKEQM                         +  DS
Sbjct: 1   MQEVAGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKKAATQADS 60

Query: 101 SPASVPLPLRVEPKPKSGIRQQDLLKKVVEIKPKRPR 137
           SPAS+PLPLRVEPKPKSGIRQQDLL+KVVE+KPKRP+
Sbjct: 61  SPASIPLPLRVEPKPKSGIRQQDLLRKVVEVKPKRPK 97