Miyakogusa Predicted Gene

chr2.CM0904.170.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0904.170.nd - phase: 0 /pseudo/partial
         (514 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | ATCPS...   482   e-136
AT1G61010.3 | Symbols: CPSF73-I | CPSF73-I | chr1:22478619-22481...    50   3e-06
AT1G61010.2 | Symbols: CPSF73-I | CPSF73-I | chr1:22478619-22481...    50   3e-06
AT1G61010.1 | Symbols: CPSF73-I | CPSF73-I; protein binding | ch...    50   3e-06
AT2G01730.1 | Symbols: EDA26, ATCPSF73-II | ATCPSF73-II (CLEAVAG...    46   6e-05

>AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 |
           ATCPSF100/CPSF100/EMB1265/ESP5 (CLEAVAGE AND
           POLYADENYLATION SPECIFICITY FACTOR); DNA binding /
           protein binding | chr5:8052553-8058150 FORWARD
          Length = 739

 Score =  482 bits (1241), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 224/315 (71%), Positives = 273/315 (86%), Gaps = 3/315 (0%)

Query: 200 YWAEENLVYPIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFLLKYITLLVNKT 259
           +W++    +PIYFL+YVSSSTIDYVKSFLEWMSD+I+KSFE +R+N FLL+++TLL+NKT
Sbjct: 253 HWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAFLLRHVTLLINKT 312

Query: 260 ELDNVPDGPKVVLASMASLEAGFSHDIFVEWGSDVKNLVLFTEKGQFATLARMLQADPPP 319
           +LDN P GPKVVLASMASLEAGF+ +IFVEW +D +NLVLFTE GQF TLARMLQ+ PPP
Sbjct: 313 DLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFGTLARMLQSAPPP 372

Query: 320 KAVKVTVSKRVPLVGDELIAYEEEQNRIKKEEALKASLIKAEELKASHGADSNTSDPMVI 379
           K VKVT+SKRVPL G+ELIAYEEEQNR+K+EEAL+ASL+K EE KASHG+D N+S+PM+I
Sbjct: 373 KFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASHGSDDNSSEPMII 432

Query: 380 DTGNNLIAPEVAGPRGGGYRDIFVDGFVPPSTSVAPMFPCYENTSEWDDFGEVINPDDYV 439
           DT       +V G  G  Y+DI +DGFVPPS+SVAPMFP Y+NTSEWDDFGE+INPDDYV
Sbjct: 433 DTKTT---HDVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEWDDFGEIINPDDYV 489

Query: 440 IKDEDMDQTAMHVGGDINGKLDEGAASLILDTKPSKVISDERTVQVRCSLVYMDFEGRSD 499
           IKDEDMD+ AMH GGD++G+LDE  ASL+LDT+PSKV+S+E  V V CSLV MD+EGRSD
Sbjct: 490 IKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVSCSLVKMDYEGRSD 549

Query: 500 GRSIKNILSHVAPLK 514
           GRSIK++++HV+PLK
Sbjct: 550 GRSIKSMIAHVSPLK 564


>AT1G61010.3 | Symbols: CPSF73-I | CPSF73-I | chr1:22478619-22481325
           REVERSE
          Length = 693

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 200 YWAEENLVY--PIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFLLKYITLLVN 257
           YWA    ++  PIY+ S ++   +   ++++  M+D I   F  +  N F+ K+I+ L +
Sbjct: 266 YWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANS--NPFVFKHISPLNS 323

Query: 258 KTELDNVPDGPKVVLASMASLEAGFSHDIFVEWGSDVKNLVLFTEKGQFATLARMLQADP 317
             + ++V  GP VV+A+   L++G S  +F  W SD KN  +        TLA+ +  +P
Sbjct: 324 IDDFNDV--GPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIINEP 381


>AT1G61010.2 | Symbols: CPSF73-I | CPSF73-I | chr1:22478619-22481325
           REVERSE
          Length = 693

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 200 YWAEENLVY--PIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFLLKYITLLVN 257
           YWA    ++  PIY+ S ++   +   ++++  M+D I   F  +  N F+ K+I+ L +
Sbjct: 266 YWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANS--NPFVFKHISPLNS 323

Query: 258 KTELDNVPDGPKVVLASMASLEAGFSHDIFVEWGSDVKNLVLFTEKGQFATLARMLQADP 317
             + ++V  GP VV+A+   L++G S  +F  W SD KN  +        TLA+ +  +P
Sbjct: 324 IDDFNDV--GPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIINEP 381


>AT1G61010.1 | Symbols: CPSF73-I | CPSF73-I; protein binding |
           chr1:22478619-22481325 REVERSE
          Length = 693

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 200 YWAEENLVY--PIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFLLKYITLLVN 257
           YWA    ++  PIY+ S ++   +   ++++  M+D I   F  +  N F+ K+I+ L +
Sbjct: 266 YWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANS--NPFVFKHISPLNS 323

Query: 258 KTELDNVPDGPKVVLASMASLEAGFSHDIFVEWGSDVKNLVLFTEKGQFATLARMLQADP 317
             + ++V  GP VV+A+   L++G S  +F  W SD KN  +        TLA+ +  +P
Sbjct: 324 IDDFNDV--GPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIINEP 381


>AT2G01730.1 | Symbols: EDA26, ATCPSF73-II | ATCPSF73-II (CLEAVAGE
           AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA
           SUBUNIT-II); catalytic/ protein binding |
           chr2:320596-323844 FORWARD
          Length = 613

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 200 YWAEENLVYPIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFLLKYITLLVNKT 259
           YW   N+  PIYF S ++     Y K  + W S  + +  +    N F  K +       
Sbjct: 254 YWERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKE--KHNTHNPFDFKNVKDF--DR 309

Query: 260 ELDNVPDGPKVVLASMASLEAGFSHDIFVEWGSDVKNLVLFTEKGQFATLARMLQADPP 318
            L + P GP V+ A+   L AGFS ++F  W     NLV         T+   L A  P
Sbjct: 310 SLIHAP-GPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMAGKP 367