Miyakogusa Predicted Gene
- chr2.CM0749.240.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0749.240.nd - phase: 0 /partial
(839 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67230.1 | Symbols: LINC1 | LINC1 (LITTLE NUCLEI1) | chr1:251... 329 5e-90
AT1G13220.2 | Symbols: LINC2 | LINC2 (LITTLE NUCLEI2); protein b... 304 2e-82
AT1G68790.1 | Symbols: LINC3 | LINC3 (LITTLE NUCLEI3) | chr1:258... 285 9e-77
AT5G65770.1 | Symbols: LINC4 | LINC4 (LITTLE NUCLEI4) | chr5:263... 129 6e-30
>AT1G67230.1 | Symbols: LINC1 | LINC1 (LITTLE NUCLEI1) |
chr1:25155224-25159695 REVERSE
Length = 1132
Score = 329 bits (843), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 243/698 (34%), Positives = 389/698 (55%), Gaps = 22/698 (3%)
Query: 2 GIQKLLAEQKDNLDLKLQEFDLEMEQKRKSLIEEFSSKEEALEQREVEVNHRENKVGKEE 61
+Q+L+ E + LD +EF+LEMEQKRKS+ + SK +E+RE E H E KV K E
Sbjct: 337 AVQQLVDEHQAKLDSTQREFELEMEQKRKSIDDSLKSKVAEVEKREAEWKHMEEKVAKRE 396
Query: 62 QALSKKAERIKEQNKELEARXXXXXXXXXXXXXXXXXXXXXXXXXXADRESLENLNVELG 121
QAL +K E+ KE+ + + R D+E + NL +
Sbjct: 397 QALDRKLEKHKEKENDFDLRLKGISGREKALKSEEKALETEKKKLLEDKEIILNLKALVE 456
Query: 122 KIKAEISQQELQICQETENLKLTEEERSEHSRLQLELQQEIEHTRLQKDFLMKEAENLRE 181
K+ E Q +I +E + L++TEEERSE+ RLQ EL+++IE R Q++ L KEAE+L+
Sbjct: 457 KVSGENQAQLSEINKEKDELRVTEEERSEYLRLQTELKEQIEKCRSQQELLQKEAEDLKA 516
Query: 182 ERQRFEKEWDALDEKKAEVSKEHNEVNEEKERLGKLQNSEEERLKREKQDIQDHIXXXXX 241
+R+ FEKEW+ LDE+KA++ E + ++KE+L + + EEERLK+EKQ +++
Sbjct: 517 QRESFEKEWEELDERKAKIGNELKNITDQKEKLERHIHLEEERLKKEKQAANENMERELE 576
Query: 242 XXXXXXXSFRDSMKQEELLLSEKVKNEKAQMLENIERKTRNLKNEIQKRQEEMEKDLQER 301
SF ++M+ E +LS+K ++E++Q+L +IE + R L++++Q EE E++LQ +
Sbjct: 577 TLEVAKASFAETMEYERSMLSKKAESERSQLLHDIEMRKRKLESDMQTILEEKERELQAK 636
Query: 302 EKKFQEEMEREINNINVLKGDAEKEWEEVKSEGIRLENERKELESNKQQLKSGQREIHED 361
+K F+EE E+E++NIN L+ A +E ++++E R+E E+ E++S+K L+ Q EI +D
Sbjct: 637 KKLFEEEREKELSNINYLRDVARREMMDMQNERQRIEKEKLEVDSSKNHLEEQQTEIRKD 696
Query: 362 SKMLMNLSRKVKKERECLMAERNNFLALVEKLRSCNACGEVIGDFV---ISDIQLPDCKE 418
L+ L++K+K++RE ++ER+ FL+ +E R+C+ CGE++ + V I ++++P+ +
Sbjct: 697 VDDLVALTKKLKEQREQFISERSRFLSSMESNRNCSRCGELLSELVLPEIDNLEMPNMSK 756
Query: 419 RCVMPLPTSPVLNDRPLKNTEDNVGASDYSGSVRPVSWIRKCTSKIFK-SPSKRTDAVSA 477
+ +P R + T +G G VSW RKCTSK+ K SP K T+
Sbjct: 757 LANILDNEAPRQEMRDISPTAAGLGLPVTGGK---VSWFRKCTSKMLKLSPIKMTEPSVT 813
Query: 478 SDMAGTSPLPDLNANTEGARVILQERQLTREMVHLSSETPLVQSDNIVREVD--NESQSI 535
++A P AN G +Q S + +S+ +EV+ N +
Sbjct: 814 WNLADQEPQSTEQANVGGPSTTVQ------AATTYSFDVQKAESETGTKEVEVTNVNSDG 867
Query: 536 DHSYVDSLVDGGPDDSQQSVPKLXXXXXXXXXXXXIVRTRSVKAVVKEANEFLGKASGEI 595
D S ++S DS ++ RTRSVK VV +A G++
Sbjct: 868 DQSDINSKAQEVAADSLSNLDVDGQSRMKGKGKARTRRTRSVKDVVDDAKALYGESINLY 927
Query: 596 E-NASLQSLDADHVKDSQEDSSHTEKAIGNTGRKRQRAQTSRIAESEQNAGDSDGQSDSI 654
E N S +++D D K S ++ ++KAI GRKR R + R +EQ+ +SDG+SDS+
Sbjct: 928 EPNDSTENVD-DSTKASTGETGRSDKAISKNGRKRGRVGSLRTCTTEQDGNESDGKSDSV 986
Query: 655 T-TVGRRKKRQTVA--QPAHVTGEKRYNLRR-HKTTGE 688
T +RK+RQ VA Q V G+ RYNLRR + TGE
Sbjct: 987 TGGAHQRKRRQKVASEQQGEVVGQ-RYNLRRPRRVTGE 1023
>AT1G13220.2 | Symbols: LINC2 | LINC2 (LITTLE NUCLEI2); protein
binding | chr1:4515696-4520068 FORWARD
Length = 1128
Score = 304 bits (779), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 242/697 (34%), Positives = 374/697 (53%), Gaps = 68/697 (9%)
Query: 3 IQKLLAEQKDNLDLKLQEFDLEMEQKRKSLIEEFSSKEEALEQREVEVNHRENKVGKEEQ 62
IQKL+ +QK+ L K+ EF+LE E+ RKSL +E K E LE+++VE++H E K+ K Q
Sbjct: 371 IQKLIDDQKEVLGSKMLEFELECEEIRKSLDKELQRKIEELERQKVEIDHSEEKLEKRNQ 430
Query: 63 ALSKKAERIKEQNKELEARXXXXXXXXXXXXXXXXXXXXXXXXXXADRESLENLNVELGK 122
A++KK +R+ E+ +LEA+ +D+ESLE+L E+ K
Sbjct: 431 AMNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSLEKQQLLSDKESLEDLQQEIEK 490
Query: 123 IKAEISQQELQICQETENLKLTEEERSEHSRLQLELQQEIEHTRLQKDFLMKEAENLREE 182
I+AE++++E I +E ++L++ +EER E+ RLQ EL+ +IE +R+ ++FL KE ENL++E
Sbjct: 491 IRAEMTKKEEMIEEECKSLEIKKEEREEYLRLQSELKSQIEKSRVHEEFLSKEVENLKQE 550
Query: 183 RQRFEKEWDALDEKKAEVSKEHNEVNEEKERLGKLQNSEEERLKREKQDIQDHIXXXXXX 242
++RFEKEW+ LDEK+A +KE ++EEKE+ + Q E ERLK+E+ ++ I
Sbjct: 551 KERFEKEWEILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKKEESALRVQIMQELDD 610
Query: 243 XXXXXXSFRDSMKQEELLLSEKVKNEKAQMLENIERKTRNLKNEIQKRQEEMEKDLQERE 302
SF +M+ E L EKVK E++++++++E RNL+ E+Q+R+E+ EKDL +R
Sbjct: 611 IRLQRESFEANMEHERSALQEKVKLEQSKVIDDLEMMRRNLEIELQERKEQDEKDLLDRM 670
Query: 303 KKFQEEMEREINNINVLKGDAEKEWEEVKSEGIRLENERKELESNKQQLKSGQREIHEDS 362
+F+++ E+++IN K +E EE+ S+ L+ E +E+ +K +LK Q E+H D
Sbjct: 671 AQFEDKRMAELSDINHQKQALNREMEEMMSKRSALQKESEEIAKHKDKLKEQQVEMHNDI 730
Query: 363 KMLMNLSRKVKKERECLMAERNNFLALVEKLRSCNACGEVIGDFVISDIQLPDCKERCVM 422
L LS +KK RE ER+ FLA V+KL+ C +CG+++ DFV+SD+QLP E ++
Sbjct: 731 SELSTLSINLKKRREVFGRERSRFLAFVQKLKDCGSCGQLVNDFVLSDLQLPSNDEVAIL 790
Query: 423 PLPTSPVLNDRP-LKNTEDNVG--------ASDYSGSVRP-VSWIRKCTSKIFKSPSKRT 472
P P VLND P N D+ AS GS RP +S ++KCTS IF SPSKR
Sbjct: 791 P-PIG-VLNDLPGSSNASDSCNIKKSLDGDASGSGGSRRPSMSILQKCTSIIF-SPSKRV 847
Query: 473 DAVSASDMAGTSPLPDLNANTEGARVILQERQLTREMVHLSSETPLVQSDNIVREVDNES 532
+ + P L+++ + E PL D +R +
Sbjct: 848 E----HGIDTGKPEQRLSSSVAVG-------------METKGEKPL-PVDLRLRPSSSSI 889
Query: 533 QSIDHSYVDSLVDGGPDDSQQSVPKLXXXXXXXXXXXXIVRTRSVKAVVKEANEFLGKAS 592
D Y DS V + SQ S +R + ++A L S
Sbjct: 890 PEEDEEYTDSRVQETSEGSQLS---------------EFQSSRRGRGRPRKAKPALNPTS 934
Query: 593 GEIENASLQSLDADHVKDSQEDSSHTEKAIGNTGRKRQRAQTSRIAESEQNAGDSDGQSD 652
+++ASL+ D + S S ++K G GRKRQ D
Sbjct: 935 S-VKHASLEESSKDEL--SGHVSVTSKKTTGGGGRKRQHI-------------------D 972
Query: 653 SITTVGRRKKRQTVAQPAHVTGEKRYNLRRHKTTGEV 689
T G+R+++QTVA G++ YNLRR KT +V
Sbjct: 973 DTATGGKRRRQQTVAVLPQTPGQRHYNLRRKKTVDQV 1009
>AT1G68790.1 | Symbols: LINC3 | LINC3 (LITTLE NUCLEI3) |
chr1:25838595-25842820 REVERSE
Length = 1085
Score = 285 bits (729), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 233/691 (33%), Positives = 359/691 (51%), Gaps = 95/691 (13%)
Query: 3 IQKLLAEQKDNLDLKLQEFDLEMEQKRKSLIEEFSSKEEALEQREVEVNHRENKVGKEEQ 62
I KLL +QK LD + +EF++E+EQ R+SL EE K+ +EQ +VE++H+E K+ K E
Sbjct: 349 IGKLLDDQKAVLDSRRREFEMELEQMRRSLDEELEGKKAEIEQLQVEISHKEEKLAKREA 408
Query: 63 ALSKKAERIKEQNKELEARXXXXXXXXXXXXXXXXXXXXXXXXXXADRESLENLNVELGK 122
AL KK E +K++ K+L+AR D+E L L E+ +
Sbjct: 409 ALEKKEEGVKKKEKDLDARLKTVKEKEKALKAEEKKLHMENERLLEDKECLRKLKDEIEE 468
Query: 123 IKAEISQQELQICQETENLKLTEEERSEHSRLQLELQQEIEHTRLQKDFLMKEAENLREE 182
I E ++QE +I +E E+L++T+EER E RLQ EL+Q+I+ + +++ L+KE E L+++
Sbjct: 469 IGTETTKQESRIREEHESLRITKEERVEFLRLQSELKQQIDKVKQEEELLLKEREELKQD 528
Query: 183 RQRFEKEWDALDEKKAEVSKEHNEVNEEKERLGKLQNSEEERLKREKQDIQDHIXXXXXX 242
++RFEKEW+ALD+K+A +++E NEV EE E+L LQ SE+ RLKRE+ +D++
Sbjct: 529 KERFEKEWEALDKKRANITREQNEVAEENEKLRNLQISEKHRLKREEMTSRDNLKRELDG 588
Query: 243 XXXXXXSFRDSMKQEELLLSEKVKNEKAQMLENIERKTRNLKNEIQKRQEEMEKDLQERE 302
SF M E++E + RNL E Q+++E E+D ER
Sbjct: 589 VKMQKESFEADM-------------------EDLEMQKRNLDMEFQRQEEAGERDFNERA 629
Query: 303 KKFQEEMEREINNINVLKGDAEKEWEEVKSEGIRLENERKELESNKQQLKSGQREIHEDS 362
+ +++ + E++NIN K A++E EE++ E + LE ER+++ K+ LK + E+H+D
Sbjct: 630 RTYEKRSQEELDNINYTKKLAQREMEEMQYEKLALEREREQISVRKKLLKEQEAEMHKDI 689
Query: 363 KMLMNLSRKVKKERECLMAERNNFLALVEKLRSCNACGEVIGDFVISDIQLPDCKERCVM 422
L L +K++R+ + ER FL +EKL+SC++CGE+ +FV+SD++LPD ++
Sbjct: 690 TELDVLRSSLKEKRKEFICERERFLVFLEKLKSCSSCGEITENFVLSDLRLPDVED---- 745
Query: 423 PLPTSPVLNDRPLKNTEDNVGASDYSGSVRPVSWIRKCTSKIFK-SPSKRTDAVSASDMA 481
+ LK E+ + S + + + S + K SK+ SP +TD V+ D+
Sbjct: 746 ---GDKRFGKQKLK-AEEALNISPSAENSKRTSLLGKIASKLLSISPIGKTDKVT--DLG 799
Query: 482 GTSPLPDLNANTEGARVILQERQLTREMVHLSSETPLVQSDNIVREVDNESQSIDHSYVD 541
T LP+ S P D + E D+E + + S+ D
Sbjct: 800 ITVKLPE-------------------------SSQPDDSLDRVSGE-DHEPSATEQSFTD 833
Query: 542 SLVDGGPDDSQQS-----VPKLXXXXXXXXXXXXIVRTRSVKAVVKEANEFLGKASGEIE 596
S + GP+ S QS P+ R+++ KAV
Sbjct: 834 SRIQEGPEGSLQSEMKSDKPRRGRGRGRGRGKSVRGRSQATKAV---------------- 877
Query: 597 NASLQSLDADHVKDSQEDSSHTEKAIGNTGRKRQRAQTSRIAESEQNAGDSDGQSDSITT 656
S ++ + G T RKRQR QTSRI ESEQ AGDSD DSITT
Sbjct: 878 ------------------SRDSKPSDGETPRKRQREQTSRITESEQAAGDSDEGVDSITT 919
Query: 657 VGRRKKRQTVAQPAHVTGEKRYNLRRHKTTG 687
GRRKKRQ + G+ RY LRRH+ G
Sbjct: 920 GGRRKKRQIAVPVSQTPGQTRYQLRRHRNVG 950
>AT5G65770.1 | Symbols: LINC4 | LINC4 (LITTLE NUCLEI4) |
chr5:26328813-26332836 FORWARD
Length = 1037
Score = 129 bits (325), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 237/490 (48%), Gaps = 18/490 (3%)
Query: 1 EGIQKLLAEQKDNLDLKLQEFDLEMEQKRKSLIEEFSSKEEALEQREVEVNHRENKVGKE 60
E IQ +LA Q+ L + + + E+E K KS+ E SK A E REV++ RE+ VG++
Sbjct: 373 ELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEK 432
Query: 61 EQALSKKAERIKEQNKELEARXXXXXXXXXXXXXXXXXXXXXXXXXXADRESLENLNVEL 120
E L ++ + E+ K++ + ++E L L++EL
Sbjct: 433 EHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLEL 492
Query: 121 GKIKAEISQQELQICQETENLKLTEEERSEHSRLQLELQQEIEHTRLQKDFLMKEAENLR 180
+ + + ++ T+ L+ + E SE S L+++L++E++ R QK ++ EA+ L+
Sbjct: 493 QQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLK 552
Query: 181 EERQRFEKEWDALDEKKAEVSKEHNEVNEEKERLGKLQNSEEERLKREKQDIQDHIXXXX 240
E+ +FE EW+ +D K+ E+ KE + ++E E + +K E+ +++
Sbjct: 553 VEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDV 612
Query: 241 XXXXXXXXSFRDSMKQEELLLSEKVKNEKAQMLENIERKTRNLKNEIQKRQEEMEKDLQE 300
F + M +E K++ E+A L IE + R L+ I+ ++EE+E ++
Sbjct: 613 ESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRD 672
Query: 301 REKKFQEEMEREINNINVLKGDAEKEWEEVKSEGIRLENERKELESNKQQLKSGQREIHE 360
REK F++E + E I LK AEKE E V+ E RL+ ER E++ ++++ + E+ +
Sbjct: 673 REKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKD 732
Query: 361 DSKMLMNLSRKVKKERECLMAERNNFLALVEKLRSCNACGEVIGDFVISDIQLPDCKERC 420
+ L K++ +R L AER+ +E+L+ + D ++ +QL + +
Sbjct: 733 SVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSW 792
Query: 421 --VMPLPTSPVLNDRPL---------KNTEDNVGASD------YSGSVRPVSWIRKCTSK 463
V L V D L N+ED +S S P SWI++CT+
Sbjct: 793 EKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSMERQNGLTPSSATPFSWIKRCTNL 852
Query: 464 IFK-SPSKRT 472
IFK SP K T
Sbjct: 853 IFKTSPEKST 862