Miyakogusa Predicted Gene
- chr2.CM0641.310.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0641.310.nc + phase: 0
(1443 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G03150.1 | Symbols: EMB1579 | EMB1579 (EMBRYO DEFECTIVE 1579)... 392 e-108
AT2G41860.2 | Symbols: CPK14 | CPK14 (calcium-dependent protein ... 46 2e-04
AT2G41860.1 | Symbols: CPK14 | CPK14 (calcium-dependent protein ... 46 2e-04
AT3G22930.1 | Symbols: | calmodulin, putative | chr3:8124293-81... 46 2e-04
AT5G12480.2 | Symbols: CPK7 | CPK7 (CALMODULIN-DOMAIN PROTEIN KI... 44 7e-04
AT5G12480.1 | Symbols: CPK7 | CPK7 (CALMODULIN-DOMAIN PROTEIN KI... 44 8e-04
>AT2G03150.1 | Symbols: EMB1579 | EMB1579 (EMBRYO DEFECTIVE 1579);
binding | chr2:952310-959001 FORWARD
Length = 1340
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/313 (58%), Positives = 231/313 (73%), Gaps = 21/313 (6%)
Query: 396 AVEVKLERTPVR--SSKD-------PRGTSKDRRGSSLTKEGKSARRDSPHHSALHRHRS 446
A+E+K +RTP +SKD P+ S+D R SSL RRD+ H A R S
Sbjct: 422 ALEIKRDRTPTARATSKDTKERTPVPKSISRDARSSSL-------RRDAHHREASIRRSS 474
Query: 447 PVKEKRREYICKVYPSRLVDIDRDYLSIDKRYPRLFVCPELSKVVVNWPRENLKLSIHTP 506
P+K RR+Y+CKV SRLVD++RDY+++DKRYPRLFV E SKVVVNWP++ L LS+HT
Sbjct: 475 PIKPIRRDYVCKVLSSRLVDMERDYVTLDKRYPRLFVPSEFSKVVVNWPKQKLTLSMHTA 534
Query: 507 ISFEHDFVQEESAIEPRDTSTKLLNGQPPNSEQGNTVWNAKIILMSGLSRTALEDLSSDK 566
+SFEHD++ E+ + + TSTK L + G +VWNAK++LMSGLSRTALEDL+SDK
Sbjct: 535 VSFEHDYI-EDGGADVKSTSTKPLALKT----GGKSVWNAKMVLMSGLSRTALEDLASDK 589
Query: 567 IFDDRIPHICNFLRFAVLKKDHSFMAVGGPWEPADGGDPSNDDNSLIKTALRYAKDVTQL 626
F+DRIPHICN L+FAVLKKDHSFMA+GG W+P DG DPS D +SLI+T LR++KD L
Sbjct: 590 FFEDRIPHICNILKFAVLKKDHSFMAIGGSWDPTDGMDPSVDQSSLIQTMLRHSKDKLHL 649
Query: 627 DLQKCQHWNRFLEIHYDRFGKDGFFSHKEVTVLYVPDLSDCLPSLEEWRGQWLAHKKAVA 686
DL C+HWN FLEIHYDR G DG FS+KE+TVL+VPDLS+CLPS + WR QWLAH+KA+
Sbjct: 650 DLSNCRHWNPFLEIHYDRVGTDGVFSYKEITVLFVPDLSECLPSFDVWRTQWLAHRKALT 709
Query: 687 EREHQLQLSLKKE 699
ER+ L +KK+
Sbjct: 710 ERDRLLSQEVKKD 722
Score = 302 bits (774), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 167/334 (50%), Positives = 211/334 (63%), Gaps = 28/334 (8%)
Query: 24 YGQNLGANYSGSSV--GGHDVTQHSVASRHSAILGGQQEVDVAG-YR------PAQYGGQ 74
Y QNLG+ Y GSSV G +Q S++SRH +I G QE D+ G YR + YG Q
Sbjct: 24 YSQNLGSGYPGSSVSGGAEGGSQISLSSRHPSITGAPQETDIGGGYRSHLSTAASHYGTQ 83
Query: 75 YSSVYGSAALSSAPQVPSMSTKGAASSALDGRGGY----SDSPKFGPGDYIPSSSHGYGH 130
Y SVYGS +LSS+ +ST G SS LD R GY DSPKF G Y+ SSHGYG
Sbjct: 84 YGSVYGSTSLSSSQ---PLSTNGLGSSVLDNRSGYVPTLPDSPKFASGSYLSPSSHGYGQ 140
Query: 131 KSDQLYGDKSLDYSGIDRRQYGERQSGYLGRDLPSEQTARYAADAVGYSGQHQQAEIYDR 190
K+D LY DK Y +DRRQYGE+ S YLGR+L +E T RYA D ++ +Q ++YDR
Sbjct: 141 KTDDLYSDKLSGYIPVDRRQYGEQSSSYLGRELQNEPTRRYA-DPSNFA---RQTDLYDR 196
Query: 191 IDQAALLRXXXXXXXXXXXXXXXXGGT-RQADYLAARTAASRHPTQDLMSYGGRMDSDPR 249
IDQA+LLR G RQ DYL R++ RH Q+ M YGGR++SDP
Sbjct: 197 IDQASLLRGEQLLKMQSLHTSSVDAGVNRQTDYLTERSSTVRHSDQEAMHYGGRLESDPH 256
Query: 250 ASSMLSATSYSGQHAPSILGAAPRRNVDDLLYSQNASNPGYGVSLPPGRDYATGKGLH-G 308
S+ + +SY+ QH PS+LGA PRRN+DD +Y +++SNPGYGVSLPPGRDY TGKG+H
Sbjct: 257 GLSVRNTSSYASQHTPSLLGAVPRRNLDDYIYPESSSNPGYGVSLPPGRDYGTGKGIHSA 316
Query: 309 NSMELDYPGNLLSQGG------HNDRKDDRASYL 336
S++LDYPG +L++G + RK DRASYL
Sbjct: 317 ASLDLDYPGGMLARGTGAAPRVDDLRKGDRASYL 350
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 69/75 (92%)
Query: 1367 AVKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDVKDLVQSALLESNT 1426
A +E VDKELLQAFRFFDRN+AGY+RVEDMR+ +H+LG FLSHR+VK+LVQSALLESNT
Sbjct: 1265 AKREETVDKELLQAFRFFDRNQAGYVRVEDMRVTIHSLGKFLSHREVKELVQSALLESNT 1324
Query: 1427 GRDDRILYNKLARMS 1441
GRDDRILYNKL R+S
Sbjct: 1325 GRDDRILYNKLVRLS 1339
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 39/70 (55%)
Query: 1117 GYILQTKGTXXXXXXXXXXXXXXXXXXXXXXVEESTLELSLFAESFNEMLQYQMGCRILT 1176
G+ILQTK ++ES+ E+SLFAES EMLQYQMG RI
Sbjct: 991 GFILQTKRNKDSKLRSLSASLDSLLDYTDKDLDESSFEISLFAESLYEMLQYQMGSRIFE 1050
Query: 1177 FLQKLRVKFV 1186
FL+KLRVK V
Sbjct: 1051 FLKKLRVKIV 1060
>AT2G41860.2 | Symbols: CPK14 | CPK14 (calcium-dependent protein
kinase 14); calmodulin-dependent protein kinase/ kinase |
chr2:17474724-17476864 REVERSE
Length = 530
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 12/77 (15%)
Query: 1368 VKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDV----KDLVQSALLE 1423
++++ D+ L +AF FFD+N++GYI +E++R L + DV +++V++ +L+
Sbjct: 423 IRKLGNDEHLKKAFTFFDKNKSGYIEIEELRDALAD--------DVDTTSEEVVEAIILD 474
Query: 1424 SNTGRDDRILYNKLARM 1440
+T +D +I Y++ A M
Sbjct: 475 VDTNKDGKISYDEFATM 491
>AT2G41860.1 | Symbols: CPK14 | CPK14 (calcium-dependent protein
kinase 14); calmodulin-dependent protein kinase/ kinase |
chr2:17474724-17476864 REVERSE
Length = 530
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 12/77 (15%)
Query: 1368 VKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDV----KDLVQSALLE 1423
++++ D+ L +AF FFD+N++GYI +E++R L + DV +++V++ +L+
Sbjct: 423 IRKLGNDEHLKKAFTFFDKNKSGYIEIEELRDALAD--------DVDTTSEEVVEAIILD 474
Query: 1424 SNTGRDDRILYNKLARM 1440
+T +D +I Y++ A M
Sbjct: 475 VDTNKDGKISYDEFATM 491
>AT3G22930.1 | Symbols: | calmodulin, putative | chr3:8124293-8125842
REVERSE
Length = 173
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 1368 VKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDVKDLVQSALLESNTG 1427
++E D+EL +AF+ FD+++ GYI ++R V+ NLG L+ +V +++ A L+
Sbjct: 100 LQETDADEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDG--- 156
Query: 1428 RDDRILYNKLARM 1440
D ++ Y++ RM
Sbjct: 157 -DGQVNYDEFVRM 168
>AT5G12480.2 | Symbols: CPK7 | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE
7) | chr5:4047820-4050038 REVERSE
Length = 441
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 1368 VKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDVKDLVQSALLESNTG 1427
+K++A D+ L +AF FFD+N++GYI ++++R L++ L + ++++ + + + +T
Sbjct: 334 LKKMANDEHLHKAFNFFDQNQSGYIEIDELREALNDE---LDNTSSEEVIAAIMQDVDTD 390
Query: 1428 RDDRILYNKLARM 1440
+D RI Y + M
Sbjct: 391 KDGRISYEEFVAM 403
>AT5G12480.1 | Symbols: CPK7 | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE
7); calmodulin-dependent protein kinase/ kinase |
chr5:4047820-4050038 REVERSE
Length = 535
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 1368 VKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDVKDLVQSALLESNTG 1427
+K++A D+ L +AF FFD+N++GYI ++++R L++ L + ++++ + + + +T
Sbjct: 428 LKKMANDEHLHKAFNFFDQNQSGYIEIDELREALNDE---LDNTSSEEVIAAIMQDVDTD 484
Query: 1428 RDDRILYNKLARM 1440
+D RI Y + M
Sbjct: 485 KDGRISYEEFVAM 497