Miyakogusa Predicted Gene

chr2.CM0641.310.nc
Show Alignment: 
BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0641.310.nc + phase: 0 
         (1443 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03150.1 | Symbols: EMB1579 | EMB1579 (EMBRYO DEFECTIVE 1579)...   392   e-108
AT2G41860.2 | Symbols: CPK14 | CPK14 (calcium-dependent protein ...    46   2e-04
AT2G41860.1 | Symbols: CPK14 | CPK14 (calcium-dependent protein ...    46   2e-04
AT3G22930.1 | Symbols:  | calmodulin, putative | chr3:8124293-81...    46   2e-04
AT5G12480.2 | Symbols: CPK7 | CPK7 (CALMODULIN-DOMAIN PROTEIN KI...    44   7e-04
AT5G12480.1 | Symbols: CPK7 | CPK7 (CALMODULIN-DOMAIN PROTEIN KI...    44   8e-04

>AT2G03150.1 | Symbols: EMB1579 | EMB1579 (EMBRYO DEFECTIVE 1579);
           binding | chr2:952310-959001 FORWARD
          Length = 1340

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/313 (58%), Positives = 231/313 (73%), Gaps = 21/313 (6%)

Query: 396 AVEVKLERTPVR--SSKD-------PRGTSKDRRGSSLTKEGKSARRDSPHHSALHRHRS 446
           A+E+K +RTP    +SKD       P+  S+D R SSL       RRD+ H  A  R  S
Sbjct: 422 ALEIKRDRTPTARATSKDTKERTPVPKSISRDARSSSL-------RRDAHHREASIRRSS 474

Query: 447 PVKEKRREYICKVYPSRLVDIDRDYLSIDKRYPRLFVCPELSKVVVNWPRENLKLSIHTP 506
           P+K  RR+Y+CKV  SRLVD++RDY+++DKRYPRLFV  E SKVVVNWP++ L LS+HT 
Sbjct: 475 PIKPIRRDYVCKVLSSRLVDMERDYVTLDKRYPRLFVPSEFSKVVVNWPKQKLTLSMHTA 534

Query: 507 ISFEHDFVQEESAIEPRDTSTKLLNGQPPNSEQGNTVWNAKIILMSGLSRTALEDLSSDK 566
           +SFEHD++ E+   + + TSTK L  +      G +VWNAK++LMSGLSRTALEDL+SDK
Sbjct: 535 VSFEHDYI-EDGGADVKSTSTKPLALKT----GGKSVWNAKMVLMSGLSRTALEDLASDK 589

Query: 567 IFDDRIPHICNFLRFAVLKKDHSFMAVGGPWEPADGGDPSNDDNSLIKTALRYAKDVTQL 626
            F+DRIPHICN L+FAVLKKDHSFMA+GG W+P DG DPS D +SLI+T LR++KD   L
Sbjct: 590 FFEDRIPHICNILKFAVLKKDHSFMAIGGSWDPTDGMDPSVDQSSLIQTMLRHSKDKLHL 649

Query: 627 DLQKCQHWNRFLEIHYDRFGKDGFFSHKEVTVLYVPDLSDCLPSLEEWRGQWLAHKKAVA 686
           DL  C+HWN FLEIHYDR G DG FS+KE+TVL+VPDLS+CLPS + WR QWLAH+KA+ 
Sbjct: 650 DLSNCRHWNPFLEIHYDRVGTDGVFSYKEITVLFVPDLSECLPSFDVWRTQWLAHRKALT 709

Query: 687 EREHQLQLSLKKE 699
           ER+  L   +KK+
Sbjct: 710 ERDRLLSQEVKKD 722



 Score =  302 bits (774), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 167/334 (50%), Positives = 211/334 (63%), Gaps = 28/334 (8%)

Query: 24  YGQNLGANYSGSSV--GGHDVTQHSVASRHSAILGGQQEVDVAG-YR------PAQYGGQ 74
           Y QNLG+ Y GSSV  G    +Q S++SRH +I G  QE D+ G YR       + YG Q
Sbjct: 24  YSQNLGSGYPGSSVSGGAEGGSQISLSSRHPSITGAPQETDIGGGYRSHLSTAASHYGTQ 83

Query: 75  YSSVYGSAALSSAPQVPSMSTKGAASSALDGRGGY----SDSPKFGPGDYIPSSSHGYGH 130
           Y SVYGS +LSS+     +ST G  SS LD R GY     DSPKF  G Y+  SSHGYG 
Sbjct: 84  YGSVYGSTSLSSSQ---PLSTNGLGSSVLDNRSGYVPTLPDSPKFASGSYLSPSSHGYGQ 140

Query: 131 KSDQLYGDKSLDYSGIDRRQYGERQSGYLGRDLPSEQTARYAADAVGYSGQHQQAEIYDR 190
           K+D LY DK   Y  +DRRQYGE+ S YLGR+L +E T RYA D   ++   +Q ++YDR
Sbjct: 141 KTDDLYSDKLSGYIPVDRRQYGEQSSSYLGRELQNEPTRRYA-DPSNFA---RQTDLYDR 196

Query: 191 IDQAALLRXXXXXXXXXXXXXXXXGGT-RQADYLAARTAASRHPTQDLMSYGGRMDSDPR 249
           IDQA+LLR                 G  RQ DYL  R++  RH  Q+ M YGGR++SDP 
Sbjct: 197 IDQASLLRGEQLLKMQSLHTSSVDAGVNRQTDYLTERSSTVRHSDQEAMHYGGRLESDPH 256

Query: 250 ASSMLSATSYSGQHAPSILGAAPRRNVDDLLYSQNASNPGYGVSLPPGRDYATGKGLH-G 308
             S+ + +SY+ QH PS+LGA PRRN+DD +Y +++SNPGYGVSLPPGRDY TGKG+H  
Sbjct: 257 GLSVRNTSSYASQHTPSLLGAVPRRNLDDYIYPESSSNPGYGVSLPPGRDYGTGKGIHSA 316

Query: 309 NSMELDYPGNLLSQGG------HNDRKDDRASYL 336
            S++LDYPG +L++G        + RK DRASYL
Sbjct: 317 ASLDLDYPGGMLARGTGAAPRVDDLRKGDRASYL 350



 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 69/75 (92%)

Query: 1367 AVKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDVKDLVQSALLESNT 1426
            A +E  VDKELLQAFRFFDRN+AGY+RVEDMR+ +H+LG FLSHR+VK+LVQSALLESNT
Sbjct: 1265 AKREETVDKELLQAFRFFDRNQAGYVRVEDMRVTIHSLGKFLSHREVKELVQSALLESNT 1324

Query: 1427 GRDDRILYNKLARMS 1441
            GRDDRILYNKL R+S
Sbjct: 1325 GRDDRILYNKLVRLS 1339



 Score = 67.4 bits (163), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 39/70 (55%)

Query: 1117 GYILQTKGTXXXXXXXXXXXXXXXXXXXXXXVEESTLELSLFAESFNEMLQYQMGCRILT 1176
            G+ILQTK                        ++ES+ E+SLFAES  EMLQYQMG RI  
Sbjct: 991  GFILQTKRNKDSKLRSLSASLDSLLDYTDKDLDESSFEISLFAESLYEMLQYQMGSRIFE 1050

Query: 1177 FLQKLRVKFV 1186
            FL+KLRVK V
Sbjct: 1051 FLKKLRVKIV 1060


>AT2G41860.2 | Symbols: CPK14 | CPK14 (calcium-dependent protein
            kinase 14); calmodulin-dependent protein kinase/ kinase |
            chr2:17474724-17476864 REVERSE
          Length = 530

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 12/77 (15%)

Query: 1368 VKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDV----KDLVQSALLE 1423
            ++++  D+ L +AF FFD+N++GYI +E++R  L +        DV    +++V++ +L+
Sbjct: 423  IRKLGNDEHLKKAFTFFDKNKSGYIEIEELRDALAD--------DVDTTSEEVVEAIILD 474

Query: 1424 SNTGRDDRILYNKLARM 1440
             +T +D +I Y++ A M
Sbjct: 475  VDTNKDGKISYDEFATM 491


>AT2G41860.1 | Symbols: CPK14 | CPK14 (calcium-dependent protein
            kinase 14); calmodulin-dependent protein kinase/ kinase |
            chr2:17474724-17476864 REVERSE
          Length = 530

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 49/77 (63%), Gaps = 12/77 (15%)

Query: 1368 VKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDV----KDLVQSALLE 1423
            ++++  D+ L +AF FFD+N++GYI +E++R  L +        DV    +++V++ +L+
Sbjct: 423  IRKLGNDEHLKKAFTFFDKNKSGYIEIEELRDALAD--------DVDTTSEEVVEAIILD 474

Query: 1424 SNTGRDDRILYNKLARM 1440
             +T +D +I Y++ A M
Sbjct: 475  VDTNKDGKISYDEFATM 491


>AT3G22930.1 | Symbols:  | calmodulin, putative | chr3:8124293-8125842
            REVERSE
          Length = 173

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 4/73 (5%)

Query: 1368 VKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDVKDLVQSALLESNTG 1427
            ++E   D+EL +AF+ FD+++ GYI   ++R V+ NLG  L+  +V  +++ A L+    
Sbjct: 100  LQETDADEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDG--- 156

Query: 1428 RDDRILYNKLARM 1440
             D ++ Y++  RM
Sbjct: 157  -DGQVNYDEFVRM 168


>AT5G12480.2 | Symbols: CPK7 | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE
            7) | chr5:4047820-4050038 REVERSE
          Length = 441

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 47/73 (64%), Gaps = 3/73 (4%)

Query: 1368 VKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDVKDLVQSALLESNTG 1427
            +K++A D+ L +AF FFD+N++GYI ++++R  L++    L +   ++++ + + + +T 
Sbjct: 334  LKKMANDEHLHKAFNFFDQNQSGYIEIDELREALNDE---LDNTSSEEVIAAIMQDVDTD 390

Query: 1428 RDDRILYNKLARM 1440
            +D RI Y +   M
Sbjct: 391  KDGRISYEEFVAM 403


>AT5G12480.1 | Symbols: CPK7 | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE
            7); calmodulin-dependent protein kinase/ kinase |
            chr5:4047820-4050038 REVERSE
          Length = 535

 Score = 43.9 bits (102), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 47/73 (64%), Gaps = 3/73 (4%)

Query: 1368 VKEVAVDKELLQAFRFFDRNRAGYIRVEDMRLVLHNLGMFLSHRDVKDLVQSALLESNTG 1427
            +K++A D+ L +AF FFD+N++GYI ++++R  L++    L +   ++++ + + + +T 
Sbjct: 428  LKKMANDEHLHKAFNFFDQNQSGYIEIDELREALNDE---LDNTSSEEVIAAIMQDVDTD 484

Query: 1428 RDDRILYNKLARM 1440
            +D RI Y +   M
Sbjct: 485  KDGRISYEEFVAM 497