Miyakogusa Predicted Gene

chr2.CM0405.50.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0405.50.nd + phase: 0 /pseudo/partial
         (611 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55480.2 | Symbols:  | adaptin family protein | chr3:20577350...   352   3e-97
AT3G55480.1 | Symbols:  | adaptin family protein | chr3:20577350...   352   3e-97

>AT3G55480.2 | Symbols:  | adaptin family protein |
           chr3:20577350-20581607 REVERSE
          Length = 987

 Score =  352 bits (904), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 205/486 (42%), Positives = 275/486 (56%), Gaps = 25/486 (5%)

Query: 130 VLLYIKGEDSWTLRKIWSYVIELAECDQNYDIRDRSRVLKKLFSSSLEFQNAEENSKSQK 189
           VL+  +  D   L++I  YV EL E D +YDIRDR+R LKKL S  L      E+S + +
Sbjct: 468 VLISAEAGDFHMLKRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQ 527

Query: 190 RDQSCVLSECIFGGQTKSVTVPSEPINY--RFYLPGSLSQLVFHAAPGYEPLPKPCSLPY 247
            + +  + E +FG + KSV+    PI    RFYLPGSLSQ+V HAAPGYEPLPKPCS  Y
Sbjct: 528 ENIAAHVVEHVFGRKLKSVS----PITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVY 583

Query: 248 IDLDQYDG--AAXXXXXXXXXXXXXXXXXXXNAXXXXXXXXXXXXXXXXXXXXTMPGNGG 305
            + DQ                          N                         N  
Sbjct: 584 EEQDQLSDLDKQREAAADLDGSEESSETGDENGSSDYDSESSNGSDFSSEGDERTVSNDA 643

Query: 306 NNNADLLIQISDPGNVLENQNGGAHSGTSGLRDLMSTKSLESWLDEAPGSSKSREVEHSR 365
           N+ A  LIQIS+             S ++   +L S ++L+ WLD+ P +S       + 
Sbjct: 644 NDPAAPLIQISET------------SVSADQEELRSRRALDLWLDDQPSTSNQTPSALNS 691

Query: 366 VQRSSARITISNIGSRVKPKCYILLDPANGNGLKVNYSFLSETPSISSHLVCLELLFENC 425
            Q S A+I+I ++GSRVKPK Y L+DP NG+GLKV+Y+FLSE  ++S   VC+E+LFEN 
Sbjct: 692 NQSSYAKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCVEVLFENS 751

Query: 426 SLEPMLDIVLIDEXXXXXXXXXXXXXPATENTLKFNIDKPAVVSMEDILSLEPGQIAKRT 485
           S EP+L++ L DE                 N    NI  P ++ ME+I  LEP Q  KR 
Sbjct: 752 SAEPILEVNLEDEESMKVADSSEQTLVGKANASYNNI--PTLIPMEEISCLEPHQSTKRL 809

Query: 486 LLARFHHHLLPLKLSLFCNDNRFPVKLRPDIGYFVKPLPISNEAFRDKESRLPGMFEYVR 545
           +  RFHHHLLP++L+L  N+ + PVKLRPD+GY VKP  +S E F   ESRLPGMFEY R
Sbjct: 810 IQVRFHHHLLPMRLTLHYNEKKVPVKLRPDLGYLVKPFSMSIEEFLATESRLPGMFEYSR 869

Query: 546 SCTFTDHILELNKDNNSLTEDKFLVICETLAIKMLSNANLSIVSVDMPDASNLDDASGLC 605
            CTF DH+ +   +N    +DKFL ICE++ +K+LSN+NL +VSVD+P A++L+DA+GL 
Sbjct: 870 RCTFDDHVKDSRTENG---KDKFLSICESITLKVLSNSNLHLVSVDLPVANSLEDATGLR 926

Query: 606 LRFCRR 611
           LRF  +
Sbjct: 927 LRFSSK 932


>AT3G55480.1 | Symbols:  | adaptin family protein |
           chr3:20577350-20581607 REVERSE
          Length = 987

 Score =  352 bits (904), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 205/486 (42%), Positives = 275/486 (56%), Gaps = 25/486 (5%)

Query: 130 VLLYIKGEDSWTLRKIWSYVIELAECDQNYDIRDRSRVLKKLFSSSLEFQNAEENSKSQK 189
           VL+  +  D   L++I  YV EL E D +YDIRDR+R LKKL S  L      E+S + +
Sbjct: 468 VLISAEAGDFHMLKRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQ 527

Query: 190 RDQSCVLSECIFGGQTKSVTVPSEPINY--RFYLPGSLSQLVFHAAPGYEPLPKPCSLPY 247
            + +  + E +FG + KSV+    PI    RFYLPGSLSQ+V HAAPGYEPLPKPCS  Y
Sbjct: 528 ENIAAHVVEHVFGRKLKSVS----PITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVY 583

Query: 248 IDLDQYDG--AAXXXXXXXXXXXXXXXXXXXNAXXXXXXXXXXXXXXXXXXXXTMPGNGG 305
            + DQ                          N                         N  
Sbjct: 584 EEQDQLSDLDKQREAAADLDGSEESSETGDENGSSDYDSESSNGSDFSSEGDERTVSNDA 643

Query: 306 NNNADLLIQISDPGNVLENQNGGAHSGTSGLRDLMSTKSLESWLDEAPGSSKSREVEHSR 365
           N+ A  LIQIS+             S ++   +L S ++L+ WLD+ P +S       + 
Sbjct: 644 NDPAAPLIQISET------------SVSADQEELRSRRALDLWLDDQPSTSNQTPSALNS 691

Query: 366 VQRSSARITISNIGSRVKPKCYILLDPANGNGLKVNYSFLSETPSISSHLVCLELLFENC 425
            Q S A+I+I ++GSRVKPK Y L+DP NG+GLKV+Y+FLSE  ++S   VC+E+LFEN 
Sbjct: 692 NQSSYAKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCVEVLFENS 751

Query: 426 SLEPMLDIVLIDEXXXXXXXXXXXXXPATENTLKFNIDKPAVVSMEDILSLEPGQIAKRT 485
           S EP+L++ L DE                 N    NI  P ++ ME+I  LEP Q  KR 
Sbjct: 752 SAEPILEVNLEDEESMKVADSSEQTLVGKANASYNNI--PTLIPMEEISCLEPHQSTKRL 809

Query: 486 LLARFHHHLLPLKLSLFCNDNRFPVKLRPDIGYFVKPLPISNEAFRDKESRLPGMFEYVR 545
           +  RFHHHLLP++L+L  N+ + PVKLRPD+GY VKP  +S E F   ESRLPGMFEY R
Sbjct: 810 IQVRFHHHLLPMRLTLHYNEKKVPVKLRPDLGYLVKPFSMSIEEFLATESRLPGMFEYSR 869

Query: 546 SCTFTDHILELNKDNNSLTEDKFLVICETLAIKMLSNANLSIVSVDMPDASNLDDASGLC 605
            CTF DH+ +   +N    +DKFL ICE++ +K+LSN+NL +VSVD+P A++L+DA+GL 
Sbjct: 870 RCTFDDHVKDSRTENG---KDKFLSICESITLKVLSNSNLHLVSVDLPVANSLEDATGLR 926

Query: 606 LRFCRR 611
           LRF  +
Sbjct: 927 LRFSSK 932