Miyakogusa Predicted Gene
- chr2.CM0405.110.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0405.110.nd - phase: 0 /pseudo/partial
(324 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55460.1 | Symbols: SCL30 | SCL30 (SC35-like splicing factor ... 155 2e-38
AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing facto... 129 4e-30
AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 121 6e-28
AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 121 7e-28
AT5G18810.1 | Symbols: SCL28 | SCL28 (SC35-like splicing factor ... 111 5e-25
AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing... 68 9e-12
AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG... 60 1e-09
AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG... 60 1e-09
AT3G10400.1 | Symbols: | RNA recognition motif (RRM)-containing... 57 1e-08
AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing... 53 3e-07
AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 6e-07
AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing... 51 1e-06
AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 49 6e-06
AT3G53500.2 | Symbols: RSZ32 | RSZ32; nucleic acid binding | chr... 48 9e-06
AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633 F... 47 1e-05
AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 47 1e-05
AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230 FOR... 47 1e-05
AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RN... 47 2e-05
AT3G54230.1 | Symbols: | nucleic acid binding | chr3:20084850-2... 46 3e-05
AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL PR... 46 4e-05
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 46 4e-05
AT5G10350.2 | Symbols: | polyadenylate-binding protein family p... 45 5e-05
AT1G09140.2 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1... 45 6e-05
AT5G65260.1 | Symbols: | polyadenylate-binding protein family p... 45 6e-05
AT2G37340.1 | Symbols: ATRSZ33, RSZ33 | RSZ33 (ARGININE/SERINE-R... 45 7e-05
AT1G09140.1 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1... 45 7e-05
AT5G51120.1 | Symbols: PABN1, ATPABN1 | ATPABN1/PABN1 (polyadeny... 45 7e-05
AT5G10350.1 | Symbols: | polyadenylate-binding protein family p... 45 8e-05
AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 1e-04
AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 32... 44 1e-04
AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing... 44 1e-04
AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing... 44 1e-04
AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,... 44 1e-04
AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 1e-04
AT4G02430.1 | Symbols: | pre-mRNA splicing factor, putative / S... 44 2e-04
AT5G08695.1 | Symbols: | nucleic acid binding / nucleotide bind... 44 2e-04
AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); ... 44 2e-04
AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic tra... 44 2e-04
AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative / S... 43 2e-04
AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 43 3e-04
AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 43 3e-04
AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein, puta... 42 4e-04
AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein, puta... 42 4e-04
AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); ... 42 5e-04
AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); ... 42 5e-04
AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); ... 42 6e-04
>AT3G55460.1 | Symbols: SCL30 | SCL30 (SC35-like splicing factor
30); RNA binding | chr3:20572001-20574479 FORWARD
Length = 262
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/91 (81%), Positives = 83/91 (91%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
LLVRNIPLDCR +E+R PFERFGPVRDVYIP+DYYSG+PRGFAFV+FVD YDA EAQ M
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 149 NRQIFAGREITVVVASETRKRPEEMRHRTRS 179
NR+ FAGREITVVVASE+RKRPEEMR +TR+
Sbjct: 109 NRRSFAGREITVVVASESRKRPEEMRVKTRT 139
>AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing factor
30a); RNA binding | chr3:4429571-4431609 REVERSE
Length = 262
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 77/98 (78%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
SLLVRN+ DCR +++R PFE+FGPV+D+Y+P+DYY+G+PRGF F+QF+DP DA+EA++
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 148 MNRQIFAGREITVVVASETRKRPEEMRHRTRSSRPDNY 185
M+ + GRE+TVV A E RK+P EMR R R R + +
Sbjct: 98 MDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRF 135
>AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636240 FORWARD
Length = 222
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 71/86 (82%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
SLLVRN+ DCR +++R FE+FGPV+D+Y+P+DYY+G+PRGF FVQF+DP DA++A++H
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 148 MNRQIFAGREITVVVASETRKRPEEM 173
M+ + GRE+TVV A E RK+P EM
Sbjct: 97 MDGYLLLGRELTVVFAEENRKKPTEM 122
>AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636161 FORWARD
Length = 220
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 71/86 (82%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
SLLVRN+ DCR +++R FE+FGPV+D+Y+P+DYY+G+PRGF FVQF+DP DA++A++H
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 148 MNRQIFAGREITVVVASETRKRPEEM 173
M+ + GRE+TVV A E RK+P EM
Sbjct: 97 MDGYLLLGRELTVVFAEENRKKPTEM 122
>AT5G18810.1 | Symbols: SCL28 | SCL28 (SC35-like splicing factor
28); RNA binding | chr5:6268927-6271160 REVERSE
Length = 236
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 66/86 (76%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
LL+RN+PLD R +++R FERFGP++D+Y+P++YY+GEPRGF FV++ DA+EA M
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 149 NRQIFAGREITVVVASETRKRPEEMR 174
N ++ GREI +V A E RK P+EMR
Sbjct: 109 NHKVIGGREIAIVFAEENRKTPQEMR 134
>AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9180792-9186145 REVERSE
Length = 1003
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
L++RN+P + +I+V F G V DV+IPK++ +G P+GFAFV+F DA+ A
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 149 NRQIFAGREITV 160
N +F R I V
Sbjct: 393 NGHMFGKRPIAV 404
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 87 GSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQY 146
++ V +P ++ F GPVR ++ + S E RGFAFV+F D + A
Sbjct: 20 ATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIE 79
Query: 147 HMNRQIFAGREITVVVASETRKRPEEMRHRTRS----SRPDN 184
N GR ITV A+ RP RT++ S PDN
Sbjct: 80 LKNGSTVGGRRITVKQAAH---RPSLQERRTKAAEGISVPDN 118
>AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
Length = 303
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
SLLV NI AD++ F ++G V DV+IP+D +G+ RGFAFV++ +A +A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 148 MNRQIFAGREITVVVA 163
++ ++ GREITV A
Sbjct: 77 LDGRVVDGREITVQFA 92
>AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
Length = 303
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
SLLV NI AD++ F ++G V DV+IP+D +G+ RGFAFV++ +A +A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 148 MNRQIFAGREITVVVA 163
++ ++ GREITV A
Sbjct: 77 LDGRVVDGREITVQFA 92
>AT3G10400.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:3232641-3233426 FORWARD
Length = 261
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 86 QGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQ 145
+ +L V N+ +I F FG V V + KD ++ + RG AFV +V DA++A
Sbjct: 56 KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 115
Query: 146 YHMNRQIFAGREITVVVASETRKRPEEMRHRT 177
M+ +I GR++TV +A++ + E ++ R
Sbjct: 116 RSMDAKILNGRKLTVSIAADNGRASEFIKKRV 147
>AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3081647-3085180 REVERSE
Length = 527
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
L V N+ + ++R FE FGPV V +P D +G+ +GF F+QFV + AQ +
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 149 NRQI-FAGREITVVVASE 165
N ++ AGR I V S+
Sbjct: 327 NGKLEIAGRTIKVSSVSD 344
>AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:7349951-7354134 REVERSE
Length = 561
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
L V N+ ++ D++R FE FG V V +P+D +G +GF FVQF DA A ++
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNA-LNL 344
Query: 149 NRQI-FAGREITVVVASETRKRPEEMRHRT 177
N Q+ AGR I V ++ + PE + +T
Sbjct: 345 NGQLEIAGRAIKVSAVTDQTEVPEAGQTQT 374
>AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:10846372-10847256 FORWARD
Length = 152
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
++VRN+P D ++ F FG + +V + KD +G+AF+QF DA A M
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 149 NRQIFAGREITVVVA 163
+R+++ GR I + +A
Sbjct: 102 DRRMYNGRMIYIDIA 116
>AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr4:8231175-8232781
FORWARD
Length = 411
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
+ V +P +E R FE +GPV DV I D + PRGF FV F D DA ++ H
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAVDSVLHK 170
Query: 149 NRQIFAGREITV 160
+G+++ V
Sbjct: 171 TFHDLSGKQVEV 182
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 85 NQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDP 138
+QG L V I + D++R F +G V + +D +G PRGF FV F DP
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57
>AT3G53500.2 | Symbols: RSZ32 | RSZ32; nucleic acid binding |
chr3:19845535-19847485 REVERSE
Length = 284
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
L V + R ++ F R+G VRDV + +DY AFV+F DP DA +A+Y++
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDY--------AFVEFSDPRDADDARYYL 64
Query: 149 NRQIFAGREITVVVA 163
+ + F G ITV +
Sbjct: 65 DGRDFDGSRITVEAS 79
>AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633
FORWARD
Length = 816
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 85 NQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEA 144
+ G L VRN+P +E+ F FG + +V++ D + RG A++ ++ P A+ A
Sbjct: 292 DTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARA 351
Query: 145 QYHMNRQIFAGREITVVVA 163
++ F GR + ++ A
Sbjct: 352 MEELDNSSFQGRLLHILPA 370
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
L V+NI + E+R F FG ++ + +PK G+ G+AFV+FV +A A+ +
Sbjct: 704 LHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNI-GQYAGYAFVEFVTKQEALNAKKAL 762
Query: 149 NRQIFAGREITVVVASE 165
F GR + + A++
Sbjct: 763 ASTHFYGRHLVLEWAND 779
>AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr2:14163161-14164511
FORWARD
Length = 404
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
+ V +P +DE R FE +GPV D I D + PRGF FV F D D+ + H
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF-DSEDSVDLVLHK 170
Query: 149 NRQIFAGREITV 160
G+++ V
Sbjct: 171 TFHDLNGKQVEV 182
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 83 EGNQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDP 138
E +QG L + I D + +R F FG V V + ++ +G PRGF FV F DP
Sbjct: 2 ESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
>AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230
FORWARD
Length = 291
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
+ V + + DE+R F++FG + + I D +G+ +G+ FV F D A+ A
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Query: 149 NRQIFAGREITVVVASETRKRPEEMRHRTRSSRPDNY 185
N + GR+ +AS R RP R R + P Y
Sbjct: 79 N-PVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQY 114
>AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA
binding | chr1:26994439-26997109 REVERSE
Length = 668
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 91 VRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNR 150
V+N+P + DE++ F ++G + + KD SG R F FV FV P A+ A MN
Sbjct: 229 VKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNG 287
Query: 151 QIFAGREITVVVASETRKRPEEMRHRTRSSR 181
+ V A + R EE+R + R
Sbjct: 288 ISLGEDVLYVGRAQKKSDREEELRRKFEQER 318
>AT3G54230.1 | Symbols: | nucleic acid binding |
chr3:20084850-20091120 FORWARD
Length = 1007
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
L+VR + D + +R F + P++D+ + +D ++ RGFAFV F DA++A
Sbjct: 434 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 493
Query: 149 NRQIFA--GREITVVVA 163
NR G+ + V A
Sbjct: 494 NRTALERNGKILRVAYA 510
>AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL
PROTEIN U1A); RNA binding | chr3:18837457-18840473
REVERSE
Length = 427
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
+L V + + +I+ FE +GP++ V++ D + +P+G+AF++++ D A
Sbjct: 139 TLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQ 198
Query: 148 MNRQIFAGREITVVV 162
+ Q GR + V V
Sbjct: 199 ADGQKIDGRRVLVDV 213
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17362319-17363754 REVERSE
Length = 352
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 85 NQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEA 144
N + V IP D ++ F ++G + DV + +D +G+ +GFAF+ + D A
Sbjct: 34 NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93
Query: 145 QYHMNRQIFAGREITVVVASETRKRPEEMRHRTRSSRP 182
++N + GR I V +K EE R +R
Sbjct: 94 VDNLNGALVLGRTIKVDHCGAYKKHEEEDEETRRQNRE 131
>AT5G10350.2 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255809-3257747
REVERSE
Length = 202
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
S+ V N+ C +E+++ F+ G V V I D + G+P+GFA+V+FV+ +A +
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVE-VEAVQEALQ 147
Query: 148 MNRQIFAGREITV 160
+N GR++ V
Sbjct: 148 LNESELHGRQLKV 160
>AT1G09140.2 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1
(ARABIDOPSIS THALIANA SERINE/ARGININE PROTEIN 30.1); RNA
binding | chr1:2943530-2945820 REVERSE
Length = 256
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDV--YIPKDYYSGEPRGFAFVQFVDPYDASEAQ 145
++ V N+P D R E+ F ++GP+ D+ IP P G+AFV+F DP DA +A
Sbjct: 8 TIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP-----RPPGYAFVEFEDPRDADDAI 62
Query: 146 YHMNRQIFAGREITVVVASETRK 168
Y + F G + V +A R+
Sbjct: 63 YGRDGYDFDGCRLRVEIAHGGRR 85
>AT5G65260.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:26097727-26100210
REVERSE
Length = 220
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
S+ V N+ C +E++ F+ G V V I D + G+P+GFA+V+FV+ +A +
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVE-VEAVQEALQ 150
Query: 148 MNRQIFAGREITVV 161
+N GR++ V+
Sbjct: 151 LNESELHGRQLKVL 164
>AT2G37340.1 | Symbols: ATRSZ33, RSZ33 | RSZ33 (ARGININE/SERINE-RICH
ZINC KNUCKLE-CONTAINING PROTEIN 33); nucleic acid
binding / nucleotide binding / zinc ion binding |
chr2:15677451-15679410 REVERSE
Length = 290
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 8/54 (14%)
Query: 107 FERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREITV 160
F R+G VRDV + +DY AFV+F DP DA +A+++++ + F G ITV
Sbjct: 31 FSRYGRVRDVDMKRDY--------AFVEFGDPRDADDARHYLDGRDFDGSRITV 76
>AT1G09140.1 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1
(ARABIDOPSIS THALIANA SERINE/ARGININE PROTEIN 30.1); RNA
binding | chr1:2942889-2945820 REVERSE
Length = 268
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDV--YIPKDYYSGEPRGFAFVQFVDPYDASEAQ 145
++ V N+P D R E+ F ++GP+ D+ IP P G+AFV+F DP DA +A
Sbjct: 8 TIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP-----RPPGYAFVEFEDPRDADDAI 62
Query: 146 YHMNRQIFAGREITVVVASETRK 168
Y + F G + V +A R+
Sbjct: 63 YGRDGYDFDGCRLRVEIAHGGRR 85
>AT5G51120.1 | Symbols: PABN1, ATPABN1 | ATPABN1/PABN1
(polyadenylate-binding protein 1); RNA binding / poly(A)
binding / protein binding | chr5:20796986-20798467
FORWARD
Length = 227
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
S+ V N+ C +E++ F+ G V V I D + G+P+GFA+V+FV+ +A +
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVE-VEAVQNSLI 161
Query: 148 MNRQIFAGREITVVVASETRKRPEEMRHRTRSSRP 182
+N GR+I V + R R R RP
Sbjct: 162 LNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRP 196
>AT5G10350.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255675-3257747
REVERSE
Length = 217
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
S+ V N+ C +E+++ F+ G V V I D + G+P+GFA+V+FV+ +A +
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVE-VEAVQEALQ 147
Query: 148 MNRQIFAGREITV 160
+N GR++ V
Sbjct: 148 LNESELHGRQLKV 160
>AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:17427345-17429584 FORWARD
Length = 379
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
L+V IP D +D ++ +FG + D + KD +G RGF +V F DA A +
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA---L 61
Query: 149 NRQIFAGREITVVVASETRKRPEEMRH 175
+ F G I V + + EEMR
Sbjct: 62 KGEHFLGNRILEVKVATPK---EEMRQ 85
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQF 135
+ V IP + R FER+G + D+Y+PKDY S + RG F+ F
Sbjct: 93 IFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITF 139
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 84 GNQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVD 137
G + V +P + D++R F RFG ++D YIPKD RGF FV F +
Sbjct: 237 GIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAE 290
>AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 322);
RNA binding | chr3:19432597-19433833 FORWARD
Length = 329
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%)
Query: 84 GNQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASE 143
G +G L V N+P + E+ F G V DV I D + RGF FV +A E
Sbjct: 113 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 172
Query: 144 AQYHMNRQIFAGREITV 160
A N GR + V
Sbjct: 173 AMQMFNSSQIGGRTVKV 189
>AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 83 EGNQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDAS 142
E + G L + I D + +R F +G V + I +D +G RGF F+ F DP
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP--CV 59
Query: 143 EAQYHMNRQIFAGREI 158
+ M++ I GR +
Sbjct: 60 SERVIMDKHIIDGRTV 75
>AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 83 EGNQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDAS 142
E + G L + I D + +R F +G V + I +D +G RGF F+ F DP
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP--CV 59
Query: 143 EAQYHMNRQIFAGREI 158
+ M++ I GR +
Sbjct: 60 SERVIMDKHIIDGRTV 75
>AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative | chr5:20469903-20471191 REVERSE
Length = 289
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
+ V N+P D + + F G V D + D +G RGF FVQ + + + A +
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 149 NRQIFAGREITVVVASETRKR 169
+ Q GR I V VA E +R
Sbjct: 269 DGQNLEGRAIKVNVAEERTRR 289
>AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519303-22520884 REVERSE
Length = 448
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 83 EGNQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDAS 142
E + G L + I D + +R F +G V + I +D +G RGF F+ F DP
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP--CV 59
Query: 143 EAQYHMNRQIFAGREI 158
+ M++ I GR +
Sbjct: 60 SERVIMDKHIIDGRTV 75
>AT4G02430.1 | Symbols: | pre-mRNA splicing factor, putative / SR1
protein, putative | chr4:1069186-1070543 FORWARD
Length = 178
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVR--DVYIPKDYYSGEPRGFAFVQFVDPYDASEAQ 145
++ V N+P D R E+ F ++GPV D+ IP P G+AFV+F D DA +A
Sbjct: 8 TIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP-----RPPGYAFVEFEDARDADDAI 62
Query: 146 YHMNRQIFAGREITVVVASETRK 168
Y + F G + V +A R+
Sbjct: 63 YGRDGYDFDGHHLRVELAHGGRR 85
>AT5G08695.1 | Symbols: | nucleic acid binding / nucleotide binding
| chr5:2829342-2834190 FORWARD
Length = 690
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 85 NQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEA 144
+ G L V +P +E+ F +FG + +V++ D + RG AFV ++ P A A
Sbjct: 225 DAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMA 284
Query: 145 QYHMNRQIFAGREITVVVA 163
+++ F GR + ++ A
Sbjct: 285 MDKLDKLPFQGRTLHILPA 303
>AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA
binding / translation initiation factor |
chr1:18420408-18423421 FORWARD
Length = 671
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 85 NQGS-LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASE 143
+QGS L V+N+ D++R F FG + + +D SG RG FV F P +A+
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATR 382
Query: 144 AQYHMNRQIFAGREITVVVASETRKRPEEMRHRTRSSRPDN 184
A MN ++ + + V +A R ++ + RP N
Sbjct: 383 AITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVN 423
>AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic
translation initiation factor 3G1); RNA binding /
translation initiation factor | chr3:3578542-3580372
FORWARD
Length = 294
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 85 NQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEA 144
++ S+ V N+ D R ++ F FG V VY+ D +G RGF FV FV DA A
Sbjct: 211 DENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 270
Query: 145 QYHMN 149
+N
Sbjct: 271 INKLN 275
>AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative / SR1
protein, putative | chr4:1069186-1071313 FORWARD
Length = 278
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVR--DVYIPKDYYSGEPRGFAFVQFVDPYDASEAQ 145
++ V N+P D R E+ F ++GPV D+ IP P G+AFV+F D DA +A
Sbjct: 8 TIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP-----RPPGYAFVEFEDARDADDAI 62
Query: 146 YHMNRQIFAGREITVVVASETRK 168
Y + F G + V +A R+
Sbjct: 63 YGRDGYDFDGHHLRVELAHGGRR 85
>AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492881-2495108
FORWARD
Length = 495
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 85 NQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDP 138
+ G L + I D + ++ F FG V + I KD +G RGF FV F DP
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP 57
>AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492881-2495058
FORWARD
Length = 494
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 85 NQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDP 138
+ G L + I D + ++ F FG V + I KD +G RGF FV F DP
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP 57
>AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
+ V + D ++ F+R+G + + I +G PRGF F+ F D A +A HM
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 149 NRQIFAGREITVVVASETRKRPE 171
+ GRE+ V S + P+
Sbjct: 74 H-----GRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
+ V + D ++ F+R+G + + I +G PRGF F+ F D A +A HM
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 149 NRQIFAGREITVVVASETRKRPE 171
+ GRE+ V S + P+
Sbjct: 74 H-----GRELGNKVISVNKAEPK 91
>AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA
binding | chr1:8055588-8058788 FORWARD
Length = 660
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 91 VRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNR 150
V+N+P + DE+R F +FG + + +D SG R F FV F A+ A MN
Sbjct: 233 VKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNG 291
Query: 151 QIFAGREITVVVASETRKRPEEMRHRTRSSRPDNY 185
+ V A + +R EE+R + R + +
Sbjct: 292 ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRF 326
>AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); RNA
binding / translation initiation factor |
chr2:15368555-15371477 REVERSE
Length = 609
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
+L ++N+ D D +R F FG + + I KD + RG+AFV F +P DA A
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAET 260
Query: 148 MNRQIFAGREITVVVASETRKRPEEMRHR 176
+N F + + V A + +R + +R +
Sbjct: 261 VNGTKFGSKCLYVGRAQKKAEREQLLREQ 289
>AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA
binding / translation initiation factor |
chr2:9950289-9953121 FORWARD
Length = 662
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
++ V+N+ DE++ F ++G + + +D G+ R F FV F +P DA+ A
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEA 284
Query: 148 MNRQIFAGREITVVVASETRKRPEEMRHRTRSSRPD 183
+N + F +E V A + +R E+ R D
Sbjct: 285 LNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSD 320