Miyakogusa Predicted Gene

chr2.CM0323.80.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0323.80.nc + phase: 0 
         (442 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37210.1 | Symbols:  | tetratricopeptide repeat (TPR)-contain...   205   4e-53
AT4G37210.2 | Symbols:  | tetratricopeptide repeat (TPR)-contain...   122   3e-28

>AT4G37210.1 | Symbols:  | tetratricopeptide repeat (TPR)-containing
           protein | chr4:17512370-17514415 FORWARD
          Length = 492

 Score =  205 bits (522), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/276 (46%), Positives = 173/276 (62%), Gaps = 50/276 (18%)

Query: 216 AWKMLDIARAIVEKQCVNTIEHVDILSTLAEISLEREEFENSLSDYQKALSILEQLVD-- 273
           AWKMLDIAR I +KQ   T+E VDIL +LAE+SLERE+ E+SLSDY+ ALSILE+LV+  
Sbjct: 218 AWKMLDIARVITDKQSTETMEKVDILCSLAEVSLEREDIESSLSDYKNALSILERLVEPD 277

Query: 274 ------------------SKPEEAIAYCEKAASVCKARLDRLTNEVKSITPASEAK---- 311
                              +P+EAI YC+KA  +CKAR++RL+NE+K  + ++ +     
Sbjct: 278 SRRTAELNFRICICLETGCQPKEAIPYCQKALLICKARMERLSNEIKGASGSATSSTVSE 337

Query: 312 --------------NKSIEDKQAEIETLTGLSSDLENKLEDLQLLVSNPKSTLSELLEKV 357
                         +KS  DK+ EI  L GL+ DLE KLEDL+    NPK  L+EL+  V
Sbjct: 338 IDEGIQQSSNVPYIDKSASDKEVEIGDLAGLAEDLEKKLEDLKQQAENPKQVLAELMGMV 397

Query: 358 AAKAGGGKESIP--AKVSSSQLATANSSGGFD--SPTISTAHS----NGSAAGVTHLGVV 409
           +AK     + +P  A++SSS++ T N++ G D  SPT+STAH+     G+A+GVTHLGVV
Sbjct: 398 SAKPNASDKVVPAAAEMSSSRMGTVNTNFGKDLESPTVSTAHTGAAGGGAASGVTHLGVV 457

Query: 410 GRGVKRTSL---APEASAPKKPALESTEGKGDSGSA 442
           GRGVKR  +   + E+SA KKPALE ++ K D  S+
Sbjct: 458 GRGVKRVLMNTTSIESSASKKPALEFSD-KADGNSS 492



 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 2/150 (1%)

Query: 6   PASETSVSMAPSEEAVAVDGTLNPSEHGKSEITNGATVDSAAIGGAESASNAETSGKNSL 65
           PA+E + ++ P+    +++ T+     G +E T     ++     + +    +   + +L
Sbjct: 20  PATEIAQTLEPN--LASIEATVESVVQGGTESTCNNDANNNNAADSAATEVCDEEREKTL 77

Query: 66  ELAVELMDKGTKAMKEDDFGEAAENFSRALEIRVANYGELAPECVNTYYKYGCALLYKAQ 125
           E A EL +KG+  +KE+DF EA + FSRALEIRVA+YGEL  EC+N YY+YG ALL KAQ
Sbjct: 78  EFAEELTEKGSVFLKENDFAEAVDCFSRALEIRVAHYGELDAECINAYYRYGLALLAKAQ 137

Query: 126 EEADPLGDVPKKQEGSQHGSSKDESVKSTI 155
            EADPLG++PKK+   Q  SS  ES+  ++
Sbjct: 138 AEADPLGNMPKKEGEVQQESSNGESLAPSV 167


>AT4G37210.2 | Symbols:  | tetratricopeptide repeat (TPR)-containing
           protein | chr4:17512370-17514066 FORWARD
          Length = 377

 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 94/158 (59%), Gaps = 38/158 (24%)

Query: 216 AWKMLDIARAIVEKQCVNTIEHVDILSTLAEISLEREEFENSLSDYQKALSILEQLVD-- 273
           AWKMLDIAR I +KQ   T+E VDIL +LAE+SLERE+ E+SLSDY+ ALSILE+LV+  
Sbjct: 218 AWKMLDIARVITDKQSTETMEKVDILCSLAEVSLEREDIESSLSDYKNALSILERLVEPD 277

Query: 274 ------------------SKPEEAIAYCEKAASVCKARLDRLTNEVKSITPASEAK---- 311
                              +P+EAI YC+KA  +CKAR++RL+NE+K  + ++ +     
Sbjct: 278 SRRTAELNFRICICLETGCQPKEAIPYCQKALLICKARMERLSNEIKGASGSATSSTVSE 337

Query: 312 --------------NKSIEDKQAEIETLTGLSSDLENK 335
                         +KS  DK+ EI  L GL+ DLE K
Sbjct: 338 IDEGIQQSSNVPYIDKSASDKEVEIGDLAGLAEDLEKK 375



 Score =  115 bits (287), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 2/150 (1%)

Query: 6   PASETSVSMAPSEEAVAVDGTLNPSEHGKSEITNGATVDSAAIGGAESASNAETSGKNSL 65
           PA+E + ++ P+    +++ T+     G +E T     ++     + +    +   + +L
Sbjct: 20  PATEIAQTLEPN--LASIEATVESVVQGGTESTCNNDANNNNAADSAATEVCDEEREKTL 77

Query: 66  ELAVELMDKGTKAMKEDDFGEAAENFSRALEIRVANYGELAPECVNTYYKYGCALLYKAQ 125
           E A EL +KG+  +KE+DF EA + FSRALEIRVA+YGEL  EC+N YY+YG ALL KAQ
Sbjct: 78  EFAEELTEKGSVFLKENDFAEAVDCFSRALEIRVAHYGELDAECINAYYRYGLALLAKAQ 137

Query: 126 EEADPLGDVPKKQEGSQHGSSKDESVKSTI 155
            EADPLG++PKK+   Q  SS  ES+  ++
Sbjct: 138 AEADPLGNMPKKEGEVQQESSNGESLAPSV 167