Miyakogusa Predicted Gene

chr2.CM0304.560.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0304.560.nd + phase: 0 
         (495 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11740.1 | Symbols: SAY1 | SAY1 | chr4:7071949-7075250 FORWARD     217   2e-56
AT4G23040.1 | Symbols:  | UBX domain-containing protein | chr4:1...   139   4e-33
AT4G00752.1 | Symbols:  | UBX domain-containing protein | chr4:3...    67   2e-11

>AT4G11740.1 | Symbols: SAY1 | SAY1 | chr4:7071949-7075250 FORWARD
          Length = 564

 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 189/465 (40%), Positives = 239/465 (51%), Gaps = 54/465 (11%)

Query: 1   MAMPNQEAIDTFINITGLSQPIALQKLQEHGGNLNEAVNAHFSEGDRGLSTSVHNTSAVA 60
           MA PNQEAIDTFI+ITG S  +ALQKL+EH G+LN+AVNA+FSEGDR +         V 
Sbjct: 1   MATPNQEAIDTFISITGASDAVALQKLEEHRGDLNQAVNAYFSEGDRNV---------VR 51

Query: 61  AALQDDFMDIDDELHADELRGPLPLLSSART---NPFSLLDPTLGRSIFDSHLDPTT-QA 116
            A  +D  ++D +      + PL + ++ART    PFSLLD    R +FDS  DP   + 
Sbjct: 52  EAPVNDDDEMDIDDVIPAPQSPLSMFNAARTIGRPPFSLLDSDFARRVFDS--DPLMPRP 109

Query: 117 PFVTLPREVREIPIEVKDGSQSAPQGSHDPSPTIEDVTGSVQANGP-DIQGIIXXXXXXX 175
           PFV+ PREVR+IPIEVKD   S P G    +PTIEDVT +    GP   QG +       
Sbjct: 110 PFVSHPREVRQIPIEVKDS--SGPSGRSSDAPTIEDVTETAHVQGPVTTQGTV------- 160

Query: 176 XXXXXXXXAHQDEQHNILGDTSRDQSAMPSAPRFENLPDYSNDXXXXXXXXXXXXXXXXX 235
                   +  D     +G + +D+ A   A    N  DY ND                 
Sbjct: 161 ---IIDEESDDDIPFAPMGRSRQDRPAGSVA--NNNNQDY-NDIEEEMIRAAIEASKKEA 214

Query: 236 XXLGRQTDLSEAGPQSMQSDLEDPELAHAVSLSLKTAEQEKALRKQG--GEDGDVGASTG 293
              G    L E  P  M+   +D ++A AV++SLK+AE+E  LR QG      ++GAS  
Sbjct: 215 E--GSSNPLLEERPLHME---DDDDIAIAVTMSLKSAEEE-VLRSQGYKASTSEIGASAV 268

Query: 294 PSKSSEVELQEMTSNERLQTGSSSFQDEGEDLEEQPLVXXXXXXXXXXXXXXANNDEVIE 353
            +     + Q +  N RL   SS F D+ +D++EQPLV               N D    
Sbjct: 269 TAAQGPQDTQAL--NGRLAAPSSPFDDDSDDVDEQPLVRHRPRRAASGSLAPPNADRSRS 326

Query: 354 ASTPPAAVQQDDSNLPQQNDDSFPTDEWGGISSEEHDEAVMLEAAMFGGIPEGRQYPYAF 413
            S      ++  S  P +    FP+ EWGGISSEEHDEAVMLEAAMFGGIPE     Y  
Sbjct: 327 GSPE----EEHASINPAERGSGFPS-EWGGISSEEHDEAVMLEAAMFGGIPE---TGYNH 378

Query: 414 APHEFMQNRGIYXXXXXXXXXXXLTAQRLIREQQDDEYLASLQAD 458
            P  F+                 LTAQRLIREQQDDEY+ASLQAD
Sbjct: 379 LP--FLPP---QPRAQPRPPSPSLTAQRLIREQQDDEYVASLQAD 418


>AT4G23040.1 | Symbols:  | UBX domain-containing protein |
           chr4:12075683-12078633 REVERSE
          Length = 525

 Score =  139 bits (350), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 104/167 (62%), Gaps = 29/167 (17%)

Query: 1   MAMPNQEAIDTFINITGLSQPIALQKLQEHGGNLNEAVNAHFSEGDRGLSTSVHNTSAVA 60
           MA P QEAIDTF+ ITG S  +A++KL+E+ GNLN AVNA+F+ GD+             
Sbjct: 1   MATPTQEAIDTFMTITGSSNAVAVRKLEEYRGNLNRAVNAYFTHGDQN------------ 48

Query: 61  AALQDDFMDIDDELHADELRGPLPLLSSAR-TNPFSLLDPTLGRSIFDSHLDPT-TQAPF 118
                D MDIDD        G  P+LS AR T+PF L DP  GRS+FD+  DP  ++ PF
Sbjct: 49  ---SYDAMDIDD--------GVTPVLSEARTTDPFPLRDPNFGRSLFDN--DPVMSRPPF 95

Query: 119 VTLPREVREIPIEVKDGSQSAPQGSHDPSPTIEDVTGSVQANGPDIQ 165
           V+ PRE REIPIEVKD   + P G  + +PTIEDVT + QA+GP  Q
Sbjct: 96  VSHPREAREIPIEVKDS--NGPSGQSNDAPTIEDVTETAQAHGPAAQ 140


>AT4G00752.1 | Symbols:  | UBX domain-containing protein |
           chr4:317771-320793 REVERSE
          Length = 469

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 15/117 (12%)

Query: 1   MAMPNQEAIDTFINITGLSQPIALQKLQEHGGNLNEAVNAHFSEGDRGLSTSVHNTSAVA 60
           M  P ++AI ++++ITG S+ +A+Q+L+EHG NL EA+NAHF + +R    S+++ S++ 
Sbjct: 1   MVSPTRDAIQSYMSITGASESLAIQRLEEHGNNLPEAINAHFRDVER----SIYDDSSLD 56

Query: 61  AALQDDFMDIDDELHADELR---------GPLP-LLSSART-NPFSLLDPTLGRSIF 106
                + ++ ++ +   E R         G LP +LS+AR   P  LLDP   R+I 
Sbjct: 57  TRSDYNVVEDNNHVRGSETRPVNESRPVPGALPSILSAARAFRPSLLLDPNYRRNIL 113



 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 38/149 (25%)

Query: 257 EDPELAHAVSLSLKTAEQEKALRKQGGEDGDVGASTGPSKSSEVELQEMTSNE--RLQTG 314
           ED ++A A+S+SL+  E E  LR Q  E         P      +  +  +NE  R Q G
Sbjct: 232 EDEDIARAISMSLEMEEHESVLRDQLAE-------FMPQSVEHHDPCQSNTNESTRYQPG 284

Query: 315 SSSFQDEGEDLEEQPLVXXXXXXXXXXXXXXANNDEVIEASTPPAAVQQDDSNLPQQNDD 374
           SSS QD  ED+                     N  + I +S+      Q   +L Q ++ 
Sbjct: 285 SSSVQDNREDM---------------------NQKQPINSSS------QHRHDL-QNSEG 316

Query: 375 SFPTDEWGGISSEEHDEAVMLEAAMFGGI 403
           S+P +EWGGI S+E  EA+MLE A+FGG+
Sbjct: 317 SYP-EEWGGIPSKELQEAIMLEKAIFGGV 344