Miyakogusa Predicted Gene

chr2.CM0237.40.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0237.40.nd - phase: 0 /partial
         (290 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08200.1 | Symbols:  | peptidoglycan-binding LysM domain-cont...   243   9e-65
AT5G23130.1 | Symbols:  | peptidoglycan-binding LysM domain-cont...   216   1e-56

>AT5G08200.1 | Symbols:  | peptidoglycan-binding LysM
           domain-containing protein | chr5:2638386-2640509 FORWARD
          Length = 409

 Score =  243 bits (621), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 154/319 (48%), Positives = 186/319 (58%), Gaps = 38/319 (11%)

Query: 1   VADVKKMNSLVTDHQMFALKILHIPLPGRHPPSPCLSNGSSTPGHGDSDHS--SPDRAHR 58
           VADVKKMN+LVTD QMFALK L IPLPGRHPPSPCLSNGS   G G S H   SP+ + +
Sbjct: 99  VADVKKMNNLVTDLQMFALKSLQIPLPGRHPPSPCLSNGSLNHGEGCSCHEPESPNHSEQ 158

Query: 59  DLLESFQSLRVKPSERKVSAKVSPAMSSLQGYYGLKXXXXXXXXXXXXXXXXM------- 111
           ++ +SFQSLR+K SE+KVS    PAM SLQGYYGLK                        
Sbjct: 159 EVFDSFQSLRLKSSEKKVS----PAMYSLQGYYGLKPADRTVSDGGCFEMGNYKTETSHH 214

Query: 112 ---------------SERPLSHHRKSKSLVNVILEEIMEKSDISLAEGNSNNWNDKLVQR 156
                          +  PL+HHRKS+SLVN ++EE+ +  D +  E  S    DK ++R
Sbjct: 215 IFNNGDNGYLRPFPSTNTPLNHHRKSRSLVNALIEEVNQSPDNNTQEPTS----DKFMRR 270

Query: 157 REKSVADFT-RIPELLLKEDNGSS-GGLPSRTGKGLALRQKAASRTAVATDSESSXXXXX 214
           R+KS ADF+ R PEL+LKE+NGSS GG  S  GKGLALR KA+SRT +A +SE+      
Sbjct: 271 RQKSEADFSSRTPELVLKEENGSSNGGFLSIAGKGLALRSKASSRTNLAAESENGNFNPV 330

Query: 215 XXXXXDAFPXXXXXXXXXXXXXXCLHDQD---NSGCSSSIWPASMWSLKPDLQARSTAGK 271
                DA                 L D D   N+G S S+WP S WSLKPDL   +    
Sbjct: 331 SMNLMDAPVSDSFSSVRKSSSASSLQDPDGNSNNG-SLSLWPTSKWSLKPDLLTPAAITS 389

Query: 272 PIFDGLPKPISGRRNKAAL 290
            IFDGLPKP++GRRNK AL
Sbjct: 390 SIFDGLPKPLTGRRNKTAL 408


>AT5G23130.1 | Symbols:  | peptidoglycan-binding LysM
           domain-containing protein | chr5:7781478-7783336 FORWARD
          Length = 397

 Score =  216 bits (551), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 134/312 (42%), Positives = 176/312 (56%), Gaps = 28/312 (8%)

Query: 1   VADVKKMNSLVTDHQMFALKILHIPLPGRHPPSPCLSNGSSTPGHGDSDHSSPDRA---H 57
           VAD+ K+N LVTD QMFAL+ L IPLPGRHPPSPCLSNGS   G   S+ +S   +   H
Sbjct: 91  VADITKLNGLVTDLQMFALESLRIPLPGRHPPSPCLSNGSLNHGEDWSEQASSSASNGNH 150

Query: 58  RDLLESFQSLRVKPSERKVSAKVSPAMSSLQGYYGLKXXXXXXXXXXXXXXXX------- 110
           +D+ +SFQSLR+  SE+K+S    PAM+SLQGYYGLK                       
Sbjct: 151 QDVFDSFQSLRLNHSEKKIS----PAMNSLQGYYGLKPKNRRASEGFGMAVYKNEASQLQ 206

Query: 111 ----------MSERPLSHHRKSKSLVNVILEEIMEKSDISLAEGNSNNWNDKLVQRREKS 160
                      +  PLSHHRKS+SLV+ ++ E+ +  + S A G   N  DK ++RR+KS
Sbjct: 207 DNDQYLTPFPATSTPLSHHRKSRSLVDAVIAEVNQSPNPSKAGGGEVNSTDKPMRRRQKS 266

Query: 161 VADFT-RIPELLLKEDN-GSSGGLPSRTGKGLALRQKAASRTAVATDSESSXXXXXXXXX 218
            ADF+ R PELLLKE+N  SSG   +  GK LALR KA+SR  ++  +E+          
Sbjct: 267 EADFSSRAPELLLKEENRSSSGAFSAIAGKNLALRSKASSRANLS--AETRHLNSIPINL 324

Query: 219 XDAFPXXXXXXXXXXXXXXCLHDQDNSGCSSSIWPASMWSLKPDLQARSTAGKPIFDGLP 278
            DA                 L + + +   SS+WP S W+LKP+L  +      IFDGLP
Sbjct: 325 MDAPVGDSFSSVRKSVSASSLQEPNCNSNGSSLWPTSKWTLKPELLTQVAMASSIFDGLP 384

Query: 279 KPISGRRNKAAL 290
           KP++GRRNK A+
Sbjct: 385 KPLTGRRNKKAV 396