Miyakogusa Predicted Gene
- chr2.CM0120.50.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0120.50.nc - phase: 0
(643 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43400.1 | Symbols: | similar to unknown protein [Arabidopsi... 736 0.0
AT5G43390.1 | Symbols: | similar to unknown protein [Arabidopsi... 690 0.0
AT5G13210.1 | Symbols: | similar to unknown protein [Arabidopsi... 583 e-167
AT3G24780.1 | Symbols: | similar to unknown protein [Arabidopsi... 536 e-152
>AT5G43400.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT5G13210.1); similar to unknown protein
[Arabidopsis thaliana] (TAIR:AT3G24780.1); similar to
unknown protein [Arabidopsis thaliana]
(TAIR:AT5G43390.1); similar to hypothetical protein
OsI_005960 [Oryza sativa (indica cultivar-group)]
(GB:EAY84727.1); similar to unnamed protein product
[Vitis vinifera] (GB:CAO70061.1); similar to
hypothetical protein [Vitis vinifera] (GB:CAN69580.1);
contains InterPro domain Uncharacterized conserved
protein UCP015417, vWA (InterPro:IPR011205) |
chr5:17443410-17445377 REVERSE
Length = 655
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/670 (55%), Positives = 451/670 (67%), Gaps = 48/670 (7%)
Query: 2 AILLGPPEIHXXXXXXXXXXXXXXXRSESDPFMDQMVANFNKLANQPSPPMGFTENMSAT 61
ILLGPP + S+ + + Q L + PPMG TEN S T
Sbjct: 6 TILLGPPSVAGNSPIIKPIHSPETHISDENTLISQTAT----LNLEEPPPMGLTENFSPT 61
Query: 62 FLSSGNPCLDFFFHVVPDTPPESLTERLQLAWWHNPLTTLKLVCNLRGVRGTGKSDREGF 121
FLSSGNPCLDFFFH+VPDT P+ L +RL ++W H+PLTTLKL+CNLRGVRGTGKSD+EGF
Sbjct: 62 FLSSGNPCLDFFFHIVPDTSPDDLIQRLAISWSHDPLTTLKLICNLRGVRGTGKSDKEGF 121
Query: 122 YAAALWLHRNHPKTLVSNVPLLAEFGYFKDLPEILYRLLEGSDARKIQKEEWKQRKRGGT 181
Y AA WL++NHPKTL NVP L +FGYFKDLPEIL+R+LEG + + + W++
Sbjct: 122 YTAAFWLYKNHPKTLALNVPALVDFGYFKDLPEILFRILEGQNMERGKNRVWRK------ 175
Query: 182 SRFCNRVPRTPFGVRRXXXXXXXXXXXXXXXXXXXXXLVXXXXXXXXXXXXXXXXXXXXX 241
RV R G R
Sbjct: 176 -----RVQRKFKGKREKKSEISGEMEDRILENAEEIG----GSVDKVKARALRKQREFEK 226
Query: 242 XXXLLQRYNTDPDFRSLHDRVSDHFAECLKRDREFLDSGSVNKISLAAKWCPSVDSSFDR 301
+ RYN+D ++R L DR++D FA LK D ++L+S + KISLA+KWCPSVDSS+D+
Sbjct: 227 AKKAVTRYNSDANYRLLFDRIADLFAVLLKSDLKYLNSNGLTKISLASKWCPSVDSSYDK 286
Query: 302 STLLCESVAKRLFPKEEYEGVEEAHYAYRVRDRLRKEVLVPLRKALELPEVYIGVNRWDS 361
+TL+CE++A+R+FP+EEYEG+EEAHYAYR+RDRLRKEVLVPL KALE PE+++ W+
Sbjct: 287 ATLICEAIARRMFPREEYEGIEEAHYAYRIRDRLRKEVLVPLHKALEFPELFMSAKEWNL 346
Query: 362 LPYNRVASVAMKFYKEKFLKHDKERFEKYLEDVKAGKTTIAAGALLPHEIIGSLRDCD-- 419
L YNRV SVAMK YK+ F +HD ERF ++LEDVK+GK IAAGALLPH+II L D
Sbjct: 347 LKYNRVPSVAMKNYKKLFEEHDSERFTEFLEDVKSGKKKIAAGALLPHQIINQLEDDSGS 406
Query: 420 --GGEVAELQWNRMVDDLLKKGKMKNCIAVCDVSGSMSGIPMEVSVALGLLVSELSVEPW 477
G EVAELQW RMVDDL KKGK+KN +AVCDVSGSMSG PMEV VALGLLVSELS EPW
Sbjct: 407 EVGAEVAELQWARMVDDLAKKGKLKNSLAVCDVSGSMSGTPMEVCVALGLLVSELSEEPW 466
Query: 478 KGKVITFSAYPEIHLIKGDDLQSKTQFVRNMEWGMNTNFQRVFDLILEVAVNGKLKEDQM 537
KGKVITFS PE+H++ G L+ KTQFVR MEWGMNT+FQ VFD ILEVAV L +DQM
Sbjct: 467 KGKVITFSENPELHIVTGSSLREKTQFVREMEWGMNTDFQIVFDRILEVAVENNLTDDQM 526
Query: 538 IKRIFVFSDMEFDEASANS------------------------WETDYQAITRKYTEKGY 573
IKR+FVFSDMEFD+A ANS WETDY+ + RKY EKG+
Sbjct: 527 IKRLFVFSDMEFDDAMANSHSEVSYHLSVEDRLKISKERSKEKWETDYEVVQRKYKEKGF 586
Query: 574 GSAVPQIVFWNLRDSKATPVPATQKGVALVSGFSKNLLTLFLDNDGDISPEEAMEAAISG 633
+ VP++VFWNLRDS ATPV A QKGVA+VSGFSKNLLTLFL+ G ++PE+ M AI G
Sbjct: 587 QN-VPEMVFWNLRDSSATPVVANQKGVAMVSGFSKNLLTLFLEEGGIVNPEDVMWIAIKG 645
Query: 634 PEYQKLVVLD 643
EY+KLVV D
Sbjct: 646 EEYKKLVVFD 655
>AT5G43390.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT5G13210.1); similar to unknown protein
[Arabidopsis thaliana] (TAIR:AT5G43400.1); similar to
unnamed protein product [Vitis vinifera]
(GB:CAO70061.1); similar to hypothetical protein [Vitis
vinifera] (GB:CAN69580.1); contains InterPro domain von
Willebrand factor, type A (InterPro:IPR002035); contains
InterPro domain Uncharacterized conserved protein
UCP015417, vWA (InterPro:IPR011205) |
chr5:17440168-17442099 REVERSE
Length = 643
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/668 (53%), Positives = 447/668 (66%), Gaps = 57/668 (8%)
Query: 2 AILLGPPEIHXXXXXXXXXXXXXXXRSESDPFMDQMVANFNKLANQPSPPMGFTENMSAT 61
AILLGPP + S+ + + Q+ N P MG TEN S T
Sbjct: 7 AILLGPPSVAAMETPV----------SDDNSVISQIAT-----LNLEEPQMGLTENFSPT 51
Query: 62 FLSSGNPCLDFFFHVVPDTPPESLTERLQLAWWHNPLTTLKLVCNLRGVRGTGKSDREGF 121
FL+SGNPCLDFFFH+VPDTP + L +RL ++W H+PLTTLKL+CNLRGVRGTGKSD+EGF
Sbjct: 52 FLTSGNPCLDFFFHIVPDTPSDDLIQRLAISWSHDPLTTLKLLCNLRGVRGTGKSDKEGF 111
Query: 122 YAAALWLHRNHPKTLVSNVPLLAEFGYFKDLPEILYRLLEGSDARKIQKEEWKQRKRGGT 181
Y AALWL++NHPKTL N+P L +FGYFKDLPEIL R+LEG +Q +RG T
Sbjct: 112 YTAALWLYKNHPKTLALNIPTLVDFGYFKDLPEILLRILEG-----------QQTERGKT 160
Query: 182 SRFCNRVPRTPFGVRRXXXXXXXXXXXXXXXXXXXXXLVXXXXXXXXXXXXXXXXXXXXX 241
+ R+ R G
Sbjct: 161 RVWRKRIQRKFKGDSEKKSTISGDMEDRILETAEETG----GPVGKVKARALRKQREFEK 216
Query: 242 XXXLLQRYNTDPDFRSLHDRVSDHFAECLKRDREFLDSGSVNKISLAAKWCPSVDSSFDR 301
L RYN+D ++R L D+++D FAE LK D E+L++ ++NKISLA+KWCPSVDSS+D+
Sbjct: 217 AKKALDRYNSDANYRLLFDQIADLFAELLKSDLEYLNTDNLNKISLASKWCPSVDSSYDK 276
Query: 302 STLLCESVAKRLFPKEEYEGVEE-AHYAYRVRDRLRKEVLVPLRKALELPEVYIGVNRWD 360
+TL+CE++A+R+F +EEYE E HYAYR+RDRLRKEVLVPL KALELPEV + W+
Sbjct: 277 TTLICEAIARRMFLREEYEEGIEEVHYAYRIRDRLRKEVLVPLHKALELPEVSMSAKEWN 336
Query: 361 SLPYNRVASVAMKFYKEKFLKHDKERFEKYLEDVKAGKTTIAAGALLPHEIIGSL-RDCD 419
L YNRV S+AM+ Y +F +HD ERF ++LEDVK+GK +AAGALLPH+II L D +
Sbjct: 337 LLKYNRVPSIAMQNYSSRFAEHDSERFTEFLEDVKSGKKKMAAGALLPHQIISQLLNDSE 396
Query: 420 GGEVAELQWNRMVDDLLKKGKMKNCIAVCDVSGSMSGIPMEVSVALGLLVSELSVEPWKG 479
G EVAELQW RMVDDL KKGK+KN +A+CDVSGSM+G PM V +ALGLLVSEL+ EPWKG
Sbjct: 397 GEEVAELQWARMVDDLAKKGKLKNSLAICDVSGSMAGTPMNVCIALGLLVSELNEEPWKG 456
Query: 480 KVITFSAYPEIHLIKGDDLQSKTQFVRNMEWGMNTNFQRVFDLILEVAVNGKLKEDQMIK 539
KVITFS P++H++ G L+ KT+FVR M++G+NT+FQ+VFD ILEVAV L ++QMIK
Sbjct: 457 KVITFSENPQLHVVTGSSLREKTKFVREMDFGINTDFQKVFDRILEVAVENNLTDEQMIK 516
Query: 540 RIFVFSDMEFDEASANS------------------------WETDYQAITRKYTEKGYGS 575
R+FVFSDMEFD+A +S WETDY+ + RKY EKG+ +
Sbjct: 517 RLFVFSDMEFDDARVDSHSEMSDYASNLESDYESVPESFEKWETDYEVVQRKYKEKGFQN 576
Query: 576 AVPQIVFWNLRDSKATPVPATQKGVALVSGFSKNLLTLFLDNDGDISPEEAMEAAISGPE 635
VP+IVFWNLRDS ATPV + QKGVA+VSGFSKNLLTLFL+ G ++PE+ M AI G E
Sbjct: 577 -VPEIVFWNLRDSSATPVVSKQKGVAMVSGFSKNLLTLFLEEGGIVNPEDVMLLAIKGEE 635
Query: 636 YQKLVVLD 643
YQKL V D
Sbjct: 636 YQKLAVYD 643
>AT5G13210.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT3G24780.1); similar to unknown protein
[Arabidopsis thaliana] (TAIR:AT5G43400.1); similar to
unnamed protein product [Vitis vinifera]
(GB:CAO70061.1); contains InterPro domain von Willebrand
factor, type A (InterPro:IPR002035); contains InterPro
domain Uncharacterized conserved protein UCP015417, vWA
(InterPro:IPR011205) | chr5:4214570-4216591 FORWARD
Length = 673
Score = 583 bits (1504), Expect = e-167, Method: Compositional matrix adjust.
Identities = 283/419 (67%), Positives = 336/419 (80%), Gaps = 23/419 (5%)
Query: 248 RYNTDPDFRSLHDRVSDHFAECLKRDREFLDSGSVNKISLAAKWCPSVDSSFDRSTLLCE 307
RY+ DPD+R LH+RVSD FA LK+D EFL S N+ISLAAKWCPS+DSSFD++TLLCE
Sbjct: 255 RYSCDPDYRYLHERVSDLFANQLKKDLEFLTSDKPNEISLAAKWCPSLDSSFDKATLLCE 314
Query: 308 SVAKRLFPKE---EYEGVEEAHYAYRVRDRLRKEVLVPLRKALELPEVYIGVNRWDSLPY 364
S+A+++F +E EYEGV EAHYAYRVRDRLRK+VLVPLRK L+LPEVY+G WD LPY
Sbjct: 315 SIARKIFTRESFPEYEGVVEAHYAYRVRDRLRKDVLVPLRKTLQLPEVYMGARNWDILPY 374
Query: 365 NRVASVAMKFYKEKFLKHDKERFEKYLEDVKAGKTTIAAGALLPHEIIGSLRDCDGGEVA 424
NRVASVAMK YKE FLKHD ERF++YL+D KAGKT +AAGA+LPHEII L DGG+VA
Sbjct: 375 NRVASVAMKSYKEIFLKHDAERFQQYLDDAKAGKTKVAAGAVLPHEIIRELDGGDGGQVA 434
Query: 425 ELQWNRMVDDLLKKGKMKNCIAVCDVSGSMSGIPMEVSVALGLLVSELSVEPWKGKVITF 484
ELQW R VDD+ +KG ++NCIAVCDVSGSM+G PMEV VALGLLVSELS EPWKGK+ITF
Sbjct: 435 ELQWKRTVDDMKEKGSLRNCIAVCDVSGSMNGEPMEVCVALGLLVSELSEEPWKGKLITF 494
Query: 485 SAYPEIHLIKGDDLQSKTQFVRNMEWGMNTNFQRVFDLILEVAVNGKLKEDQMIKRIFVF 544
S PE+HL+KGDDL SKT+FV+ M+WGMNT+FQ+VFDLIL VAV KLK ++MIKR+FVF
Sbjct: 495 SQNPELHLVKGDDLYSKTEFVKKMQWGMNTDFQKVFDLILGVAVQEKLKPEEMIKRVFVF 554
Query: 545 SDMEFDEAS--------------------ANSWETDYQAITRKYTEKGYGSAVPQIVFWN 584
SDMEFD+A+ +N WETDY+ I RKY + GYG VP+IVFWN
Sbjct: 555 SDMEFDQAASSSHYSRPGYAFLRQPPSNPSNGWETDYEVIVRKYKQNGYGDVVPEIVFWN 614
Query: 585 LRDSKATPVPATQKGVALVSGFSKNLLTLFLDNDGDISPEEAMEAAISGPEYQKLVVLD 643
LRDS+ATPVP +KGVALVSGFSKNL+ +FL++DG+I P ME AIS EY+ LVV+D
Sbjct: 615 LRDSRATPVPGNKKGVALVSGFSKNLMKMFLEHDGEIDPVMMMETAISKDEYKSLVVVD 673
Score = 228 bits (582), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 114/183 (62%), Positives = 130/183 (71%), Gaps = 6/183 (3%)
Query: 4 LLGPPEIHXXXXXXXXXXXXXXXRSESDPFMDQMVANFNKLA---NQPSPPMGFTENMSA 60
LLGPPE+ SDPFMD MV+NFN A N SPPMG+TEN SA
Sbjct: 6 LLGPPELRDPNSLLPKPTTTS---GPSDPFMDAMVSNFNNSARVNNVNSPPMGYTENKSA 62
Query: 61 TFLSSGNPCLDFFFHVVPDTPPESLTERLQLAWWHNPLTTLKLVCNLRGVRGTGKSDREG 120
T+LSSGNPCLDFFFHVVP TP SL + LQ AW H+ LTTLKL+CNLRGVRGTGKSD+EG
Sbjct: 63 TYLSSGNPCLDFFFHVVPSTPKHSLEQWLQGAWDHDALTTLKLICNLRGVRGTGKSDKEG 122
Query: 121 FYAAALWLHRNHPKTLVSNVPLLAEFGYFKDLPEILYRLLEGSDARKIQKEEWKQRKRGG 180
FY AALWLH HPKTL N+ L++FGYFKD PE+LYR+L+GS+ RKIQK E +RK
Sbjct: 123 FYTAALWLHGRHPKTLACNLESLSQFGYFKDFPELLYRILQGSEIRKIQKSERFKRKSEA 182
Query: 181 TSR 183
R
Sbjct: 183 LDR 185
>AT3G24780.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT5G13210.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO70061.1); contains
InterPro domain von Willebrand factor, type A
(InterPro:IPR002035); contains InterPro domain
Uncharacterized conserved protein UCP015417, vWA
(InterPro:IPR011205) | chr3:9049453-9051600 FORWARD
Length = 715
Score = 536 bits (1382), Expect = e-152, Method: Compositional matrix adjust.
Identities = 261/397 (65%), Positives = 310/397 (78%), Gaps = 36/397 (9%)
Query: 248 RYNTDPDFRSLHDRVSDHFAECLKRDREFLDSGSVNKISLAAKWCPSVDSSFDRSTLLCE 307
+Y+ DP++R LH+RVS+ FA LKRD EFL SG NKISLAAKWCPS+DSSFD++TL+CE
Sbjct: 307 KYSNDPNYRFLHERVSELFANQLKRDLEFLTSGQPNKISLAAKWCPSLDSSFDKATLICE 366
Query: 308 SVAKRLFPKE---EYEGVEEAHYAYRVRDRLRKEVLVPLRKALELPEVYIGVNRWDSLPY 364
S+A+++FP+E EYEGVE+AHYAYRVRDRLRK+VLVPLRK L+LPEVY+G W SLPY
Sbjct: 367 SIARKIFPQESFPEYEGVEDAHYAYRVRDRLRKQVLVPLRKTLQLPEVYMGARAWQSLPY 426
Query: 365 NRVASVAMKFYKEKFLKHDKERFEKYLEDVKAGKTTIAAGALLPHEIIGSLRDCDGGEVA 424
NRVASVAMK YKE FL D++RF++YL D K GKT IAAGA+LPHEII L DGG+VA
Sbjct: 427 NRVASVAMKSYKEVFLYRDEKRFQQYLNDAKTGKTKIAAGAVLPHEIIRELNGGDGGKVA 486
Query: 425 ELQWNRMVDDLLKKGKMKNCIAVCDVSGSMSGIPMEVSVALGLLVSELSVEPWKGKVITF 484
ELQW RMVDDL +KG + NC+A+CDVSGSM+G PMEVSVALGLLVSELS EPWKGK+ITF
Sbjct: 487 ELQWKRMVDDLKEKGSLTNCMAICDVSGSMNGEPMEVSVALGLLVSELSEEPWKGKLITF 546
Query: 485 SAYPEIHLIKGDDLQSKTQFVRNMEWGMNTNFQRVFDLILEVAVNGKLKEDQMIKRIFVF 544
PE+HL+KGDDL+SKT+FV +M+W MNT+FQ+VFDLIL+VAV KLK MIKR+FVF
Sbjct: 547 RQSPELHLVKGDDLRSKTEFVESMQWDMNTDFQKVFDLILKVAVESKLKPQDMIKRVFVF 606
Query: 545 SDMEFDEASANS---------------------------------WETDYQAITRKYTEK 571
SDMEFDEAS ++ W+TDY+ I RKY EK
Sbjct: 607 SDMEFDEASTSTSSFNKWRSSPPTPSNRWDTLSYSEDDEDEENDAWQTDYKVIVRKYREK 666
Query: 572 GYGSAVPQIVFWNLRDSKATPVPATQKGVALVSGFSK 608
GYG AVP+IVFWNLRDS++TPV +KGVALVSGFSK
Sbjct: 667 GYGEAVPEIVFWNLRDSRSTPVLGNKKGVALVSGFSK 703
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 106/127 (83%)
Query: 46 NQPSPPMGFTENMSATFLSSGNPCLDFFFHVVPDTPPESLTERLQLAWWHNPLTTLKLVC 105
N+ SP MG+TEN SAT+LSSGNPCLDFFFH+VP TP +SL +RL+ AW H+ LTTLKL+C
Sbjct: 104 NKSSPAMGYTENRSATYLSSGNPCLDFFFHIVPSTPKKSLEQRLEEAWDHDSLTTLKLIC 163
Query: 106 NLRGVRGTGKSDREGFYAAALWLHRNHPKTLVSNVPLLAEFGYFKDLPEILYRLLEGSDA 165
NLRGVRGTGKSD+EGFY AALWLH HPKTL N+ L++FGYFKD PEILYR+L+G +
Sbjct: 164 NLRGVRGTGKSDKEGFYTAALWLHGRHPKTLACNLESLSKFGYFKDFPEILYRILQGPEI 223
Query: 166 RKIQKEE 172
R IQK +
Sbjct: 224 RSIQKTQ 230