Miyakogusa Predicted Gene

chr2.CM0102.210.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0102.210.nd - phase: 1 /partial
         (338 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20760.1 | Symbols:  | calcium-binding EF hand family protein...    70   3e-12
AT1G21630.1 | Symbols:  | calcium-binding EF hand family protein...    52   4e-07

>AT1G20760.1 | Symbols:  | calcium-binding EF hand family protein |
            chr1:7209505-7214763 FORWARD
          Length = 1019

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 113/277 (40%), Gaps = 90/277 (32%)

Query: 126  SAVGSPH---RDLGDADIRRTAGEDSSPHYQDAIHETQSDRGDVKSVFSEDKFFDEPNWG 182
            S  G+ H   R   D+ + R A E  SP Y    +                +FFD+ NW 
Sbjct: 762  SEYGTTHSEDRSPRDSPVSRNATEVPSPDYSQGKNS---------------EFFDDSNWA 806

Query: 183  T-FDTNDDIDSVWGFNASSITNEERDLGSAGDNYFFGSG-ELGLNPIKTASPRAGDF-FQ 239
            + FDTNDD+DSVWGF+AS           + D  +FGSG + G N  +  SP +  F  Q
Sbjct: 807  SAFDTNDDVDSVWGFDAS----------KSQDGDYFGSGDDFGGNTARADSPSSRSFGAQ 856

Query: 240  KSSGFSFDDXXXXXXXXXXXXXXXXXKE--WLETAFDNLSRFDSFRTH------------ 285
            + S F+FDD                  +    +  FD+ SRFDSF T             
Sbjct: 857  RKSQFAFDDSVPSTPLSRFGNSPPRFSDASARDNNFDSFSRFDSFNTSEAGAGFSSQPER 916

Query: 286  ----DSVS---------------------LPAGETLARFDSIRSS--------------- 305
                DS++                     +   E  +RFDSI SS               
Sbjct: 917  LSRFDSINSSKDFGGAAFSRFDSINSSRDVTGAEKFSRFDSINSSKDFGGPSLSRFDSMN 976

Query: 306  --VDYDHGHGFPAFDDSDPFGS-GPFRTSS-ESQTPR 338
               D+   HG+ +FDD+DPFGS GPF+ SS ES T R
Sbjct: 977  STKDFSGSHGY-SFDDADPFGSTGPFKVSSDESPTKR 1012


>AT1G21630.1 | Symbols:  | calcium-binding EF hand family protein |
           chr1:7581446-7587785 FORWARD
          Length = 1218

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 42/238 (17%)

Query: 1   WQPGIQXXXXXXXXXXXXXXXXXFAVVKELTLDVKNIIAPPKQKLPPAVNKKALDVGSPT 60
           WQPGIQ                 F  VKELTLD++N+IAPPK+K   +  +K +DV S  
Sbjct: 753 WQPGIQEGAADWDEDWDKLEDEGFTFVKELTLDIQNVIAPPKEK--SSAWRKEVDVSS-- 808

Query: 61  FAASPKSDDKKDLDVGSPTFAASPKSDDKSEKPQTTNEQGVSNGSVYNKSEDGSARSAPN 120
                    K+  DV   +F+    +D K+ K Q++ E+         K+ D  AR    
Sbjct: 809 ---------KEGEDV---SFS---DADSKTGKKQSSGEEDSEQSE--GKTSDVDARDKNG 851

Query: 121 SPLASSAVGSPHRDLGDADIRRTAGEDSSPHYQDAIHETQSDRGDVKSVFSEDKFFDEPN 180
           S             L D+ +R+    DSSP  +D   E   D G+  S  S  K  +   
Sbjct: 852 S-------------LDDSKVRKGIEADSSPRTKDTRSENGHDDGE--STASAGKTVN--- 893

Query: 181 WGTFDTNDDIDSVWGFNASSITNEERDLGSAGDNYFFGSGELGLNPIKTASPRAGDFF 238
              +D++D+ DSV   N  +  +++     +G  + FG  +  + PIKT S  + DF 
Sbjct: 894 ---YDSHDETDSVSSVNPDNGKDKDHGKYDSGFGFGFGFDDFSIKPIKTGSTISNDFL 948



 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 10/73 (13%)

Query: 275  NLSRFDSF--RTHDSVSLP-AGET----LARFDSIRSSVDYDHGHGFPAFDDSDPFGS-G 326
            N  R+DSF  +++DS S   A ET    L RFDSI S+ D D+ HGF  FDD DPFGS G
Sbjct: 1139 NYQRYDSFNAQSYDSSSNNNASETPKASLTRFDSIGSTRDSDYSHGF-GFDDHDPFGSTG 1197

Query: 327  PFR-TSSESQTPR 338
            PF+ T++ ++TPR
Sbjct: 1198 PFKTTTTTAETPR 1210