Miyakogusa Predicted Gene

chr2.CM0065.210.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0065.210.nc + phase: 0 
         (516 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03820.1 | Symbols:  | nonsense-mediated mRNA decay NMD3 fami...   676   0.0  

>AT2G03820.1 | Symbols:  | nonsense-mediated mRNA decay NMD3 family
           protein | chr2:1165146-1166696 REVERSE
          Length = 516

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/485 (65%), Positives = 393/485 (81%), Gaps = 9/485 (1%)

Query: 6   EEAGMFTVHRTVGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPECES 65
           +E+GMF V +T+GSVLCCKCG+PM PNAANMCV CLRSEVDITEGL K + + +CPEC  
Sbjct: 5   DESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPECTC 64

Query: 66  YLQPPRTWIKLQLESKELLTFCLKKLQKNMSSSKVRMVHAEFIWTEPHSKRIKVNVKVQK 125
           YLQPP+TWIK Q ESKELLTFC+K+L KN++  KV++ +AEF+WTEPHSKRIKV + VQ 
Sbjct: 65  YLQPPKTWIKCQWESKELLTFCIKRL-KNLN--KVKLKNAEFVWTEPHSKRIKVKLTVQA 121

Query: 126 EVLNGAILEQSYLVEYVQQEHLCESCSKVAANPDQWVAAVQLRQHVSHRRTFFYLEQLIL 185
           EVLNGA+LEQSY VEY  +++LCESCS+  ANPDQWVA++QLRQHVSHRRTFFYLEQLIL
Sbjct: 122 EVLNGAVLEQSYPVEYTVRDNLCESCSRFQANPDQWVASIQLRQHVSHRRTFFYLEQLIL 181

Query: 186 KHGAAASAIRIKQMDEGIDFYFSNRSHGVKFVEFIGKVAPIKSRSDKQLVSHDTKSNEYN 245
           +H AA+ AIRI+Q+D+GIDF+F N+SH   FVEF+ KV PI+ R D+QLVSHD KS+ YN
Sbjct: 182 RHDAASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYN 241

Query: 246 YKHTFSVEISPICREDLICLPPKVALSLGNLGPIVICTKVTNSIALLDPFTLRYCFLDAD 305
           YK+T+SV+I P+CREDL+CLP KVA  LGNLGP+V+CTKV+++I LLDP TLR  FLDA 
Sbjct: 242 YKYTYSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAFLDAR 301

Query: 306 QYWRSSFKSLLTSRQLVEYIVLDXXXXXXXXXXXXXKYVLADAQVARVSDFGKNDTIFSI 365
           QYWRS F+S LTSRQLV+Y V D             KY L+  Q+AR SD GK   +F +
Sbjct: 302 QYWRSGFRSALTSRQLVKYFVFDVEPPVGEATVGGQKYALSYVQIARESDIGK---MFYV 358

Query: 366 KTHLGHLLNPGDYALGYDLYGANNNDIELDKYKGLI---LPDAILVKKSYEEKRQKKRGK 422
           +THLGH+L PGD ALGYD+YGAN ND E++KY+  +   LP+AIL+KK YEE+R++K+ K
Sbjct: 359 QTHLGHILKPGDQALGYDIYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRERKQKK 418

Query: 423 ARSWKLKSLNMEVDDKVARADPDKMHSEYEQFLKDLEENPDLRFNISLYRNKEYQPSEIA 482
           +R+WKLKSL ME+DD   R DP+K   EYE+FL+DLEENP+LRFNISLYR+K+YQ SE A
Sbjct: 419 SRNWKLKSLPMEMDDSRGRVDPEKTDKEYEEFLRDLEENPELRFNISLYRDKDYQASETA 478

Query: 483 SVTDG 487
           S+TDG
Sbjct: 479 SMTDG 483