Miyakogusa Predicted Gene
- chr2.CM0056.430.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0056.430.nc - phase: 0
(715 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G26830.1 | Symbols: | threonyl-tRNA synthetase / threonine--... 1087 0.0
AT2G04842.1 | Symbols: EMB2761 | EMB2761 (EMBRYO DEFECTIVE 2761)... 417 e-116
AT1G17960.1 | Symbols: | threonyl-tRNA synthetase, putative / t... 389 e-108
AT1G18130.1 | Symbols: | tRNA synthetase-related / tRNA ligase-... 206 6e-53
>AT5G26830.1 | Symbols: | threonyl-tRNA synthetase /
threonine--tRNA ligase (THRRS) | chr5:9437354-9441571
FORWARD
Length = 709
Score = 1087 bits (2811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/671 (76%), Positives = 583/671 (86%)
Query: 44 HAKDDAYLTAAIPKRISMFEAIQAEQRTLRLTLSPDPIKVTLPDGSVRDAKKWQTTPLDV 103
H KD+AYL+A IPKRI +FE IQA Q +L DPIKVTLPDG+V++ KKW+TTP+D+
Sbjct: 38 HPKDEAYLSAVIPKRIKLFEQIQANQLENLKSLPHDPIKVTLPDGNVKEGKKWETTPMDI 97
Query: 104 ARDISKNLAANALIAKVNGVLWDMARPLEEDCELQIFKFNDDEGRDTFWHSSAHILGQSL 163
A ISK LA +ALI+ V+ VLWDM RPLE DC+L++FKF+ D+GRDT WHSSAHILGQ+L
Sbjct: 98 AAQISKGLANSALISAVDDVLWDMNRPLEGDCKLELFKFDSDKGRDTLWHSSAHILGQAL 157
Query: 164 ETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAAAEKQPFERIEVTR 223
E EYGC+LCIGPCTTRGEGFYYD FYG+LGL+D+HF IEAGA KAA E QPFERIEVT+
Sbjct: 158 EQEYGCQLCIGPCTTRGEGFYYDGFYGELGLSDNHFPSIEAGAAKAAKEAQPFERIEVTK 217
Query: 224 DQALEMFSENKFKIEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSA 283
DQALEMFSEN FK+E+IN LPAD TITVYRCGPLVDLCRGPHIPNTSFVKA CL+ASSA
Sbjct: 218 DQALEMFSENNFKVELINGLPADMTITVYRCGPLVDLCRGPHIPNTSFVKAFKCLRASSA 277
Query: 284 YWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSW 343
YW+GDKDRESLQRVYGISYPDQK LK+YL LEEAKKYDHR+LG KQEL H+ SPGS+
Sbjct: 278 YWKGDKDRESLQRVYGISYPDQKQLKKYLQFLEEAKKYDHRLLGQKQELFFSHQLSPGSY 337
Query: 344 FFLPHGARIYNKLMDFIRNQYRDRGYQEVISPNVFNMELWEKSGHAANYREDMFVFEIDK 403
FFLP G R+YN+LMDFI+NQY RGY EVI+PN++NMELW+ SGHA NY+++MF F I+K
Sbjct: 338 FFLPLGTRVYNRLMDFIKNQYWHRGYTEVITPNMYNMELWQTSGHADNYKDNMFTFNIEK 397
Query: 404 QDFGLKPMNCPGHCLMFQHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDA 463
Q+FGLKPMNCPGHCL+FQHRVRSYRELP+R ADFGVLHRNEASGALSGLTRVRRFQQDDA
Sbjct: 398 QEFGLKPMNCPGHCLIFQHRVRSYRELPMRLADFGVLHRNEASGALSGLTRVRRFQQDDA 457
Query: 464 HIFCRESQIKEEVRKALNFINYVYEVFGFTYELKLSTRPEKYLGELATWEKAENALKEAL 523
HIFC Q+K EV+ L FI+YVY+VFGFTYELKLSTRPEKYLG+L TW+KAE LKEA+
Sbjct: 458 HIFCTTEQVKGEVQGVLEFIDYVYKVFGFTYELKLSTRPEKYLGDLETWDKAEADLKEAI 517
Query: 524 DEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEYSAEDEAKI 583
+ FGKP LNEGDGAFYGPKIDI+VSDA++RKFQCATLQLDFQLP RF LEY+AEDEAK
Sbjct: 518 EAFGKPLVLNEGDGAFYGPKIDITVSDAMNRKFQCATLQLDFQLPIRFNLEYAAEDEAKK 577
Query: 584 ERPVMIHRAILGSVERMFAILLEHYKGKWPLWLSPRQAIVCPVSEKSQAYALQVRDQIHQ 643
RPVMIHRA+LGSVERMFAILLEHYKGKWP W+SPRQAIVCP+SEKSQ YA +V+ QI
Sbjct: 578 SRPVMIHRAVLGSVERMFAILLEHYKGKWPFWISPRQAIVCPISEKSQQYAEKVQKQIKD 637
Query: 644 AGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHSVMSIENL 703
AG++VDAD TDRKI KKVREAQLAQYNYILVVGE EA TGQVSVRVRD A HSV SIE+L
Sbjct: 638 AGFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQVSVRVRDNAAHSVKSIEDL 697
Query: 704 LKHFSDEVAAF 714
L+ F + A F
Sbjct: 698 LEEFKAKTAEF 708
>AT2G04842.1 | Symbols: EMB2761 | EMB2761 (EMBRYO DEFECTIVE 2761);
threonine-tRNA ligase | chr2:1698463-1701268 REVERSE
Length = 650
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/565 (40%), Positives = 344/565 (60%), Gaps = 16/565 (2%)
Query: 153 HSSAHILGQSLETEY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAAA 211
H+ AH++ +++ + K+ IGP GFYYD + L D K+I+ + +
Sbjct: 84 HTCAHVMAMAVQKLFPDAKVTIGPWID--NGFYYD--FDMEPLTDKDLKRIKKEMDRIIS 139
Query: 212 EKQPFERIEVTRDQALE--MFSENKFKIEIINDLPADKTITVYRCG-PLVDLCRGPHIPN 268
P R EV+R++A + M +K+EI++ + ++ ITVY G DLC GPH+
Sbjct: 140 RNLPLLREEVSREEAKKRIMAINEPYKMEILDGI-KEEPITVYHIGNEWWDLCAGPHVET 198
Query: 269 TSFV--KAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRIL 326
T + KA+ + AYWRGD+ R+ LQR+YG ++ ++ LK YLH EEAK+ DHR +
Sbjct: 199 TGKINKKAVELESVAGAYWRGDEKRQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRI 258
Query: 327 GVKQELI-LHHEWSPGSWFFLPHGARIYNKLMDFIRNQYRDRGYQEVISPNVFNMELWEK 385
G +L + E G F+ P GA + N + + + + + GY + +P+V +LW+
Sbjct: 259 GQDLDLFSIQDEAGGGLVFWHPKGAIVRNIIEESWKKMHVEHGYDLIYTPHVAKADLWKI 318
Query: 386 SGHAANYREDMF-VFEIDKQDFGLKPMNCPGHCLMFQHRVRSYRELPLRFADFGVLHRNE 444
SGH YRE+M+ EI+ + + L+PMNCP H L++Q + +SYR+LP+R A+ G ++R E
Sbjct: 319 SGHLDFYRENMYDQMEIEDELYQLRPMNCPYHILLYQRKRQSYRDLPIRVAELGTVYRYE 378
Query: 445 ASGALSGLTRVRRFQQDDAHIFCRESQIKEEVRKALNFINYVYEVFGFT-YELKLSTRPE 503
SG+L GL RVR F QDDAHIFC E QIK+E+R L+ + FGF YE+ LSTRPE
Sbjct: 379 LSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILSRFGFNKYEVNLSTRPE 438
Query: 504 KYLGELATWEKAENALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQL 563
K +G WEKA AL++ALD+ G ++++EG GAFYGPKID+ + DAL RK+QC+T+Q+
Sbjct: 439 KSVGGDDIWEKATCALRDALDDKGWSYEVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQV 498
Query: 564 DFQLPDRFKLEYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPLWLSPRQAIV 623
DF LP RF + Y + K +RP+MIHRA+LGS+ER F +L+EHY G +PLWLSP Q V
Sbjct: 499 DFNLPQRFDITYVDTNSDK-KRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPVQVRV 557
Query: 624 CPVSEKSQAYALQVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTG 683
PV++ + +V ++ G + +R + K +R A+ + + VVG +E TG
Sbjct: 558 LPVTDNQLEFCKEVSKKLRACGVRAELCHGER-LPKLIRNAETQKIPLMAVVGPKEVETG 616
Query: 684 QVSVRVRDKADHSVMSIENLLKHFS 708
V+VR R + + +++L+ +
Sbjct: 617 TVTVRSRFGGELGTIPVDDLINKIN 641
>AT1G17960.1 | Symbols: | threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative | chr1:6181008-6183730
REVERSE
Length = 458
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/290 (64%), Positives = 234/290 (80%), Gaps = 5/290 (1%)
Query: 429 ELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKEEVRKALNFINYVYE 488
+LP+R A+FGVLHRNE SGAL G+TRVRRF QDDAHIFCR Q++EEV+ L+FI+YVY
Sbjct: 169 KLPIRMAEFGVLHRNEDSGALGGMTRVRRFVQDDAHIFCRVDQVEEEVKGVLDFIDYVYR 228
Query: 489 VFGFTYELKLSTRPEKYLGELATWEKAENALKEALDEFGKPWQLNEGDGAFYGPKIDISV 548
+FGFTYEL LSTRP+ ++G+L TW KAEN L++ALD+FGKPW + EGDGAFYGPKIDI+V
Sbjct: 229 IFGFTYELTLSTRPKDHIGDLETWAKAENDLEKALDDFGKPWVIKEGDGAFYGPKIDITV 288
Query: 549 SDALSRKFQCATLQLDFQLPDRFKLEYSAEDEAKIERPVMIHRAILGSVERMFAILLEHY 608
SDA +RKFQCAT+QLDFQLP FKL+Y +E + ++E PVMIH A+LGS+ERMFAILLEHY
Sbjct: 289 SDARNRKFQCATIQLDFQLPACFKLKYLSE-KNEMEAPVMIHSAVLGSIERMFAILLEHY 347
Query: 609 KGKWPLWLSPRQAIVCPVSEKSQAYALQVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQ 668
KG WP WLSPRQAIVC +SE +YA QV+ QI++ GY+VD D +DR ++KKV +A+ A
Sbjct: 348 KGIWPFWLSPRQAIVCSLSEDCSSYAKQVQKQINEVGYYVDIDESDRSLRKKVADARDAP 407
Query: 669 YNYILVVGEEEANTGQVSVRVRD----KADHSVMSIENLLKHFSDEVAAF 714
YNYILVVG++E TGQV+VR+R+ + D MSIE+LL F + F
Sbjct: 408 YNYILVVGQKEVATGQVTVRLREDPEGRKDLPEMSIESLLDEFKFKTVNF 457
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/163 (63%), Positives = 129/163 (79%), Gaps = 2/163 (1%)
Query: 44 HAKDDAYLTAAIPKRISMFEAIQAEQRTLRLTLSPDPIKVTL-PDGSVRDAKKWQTTPLD 102
H KD+AYL++ IPKRI +FE IQAEQ + DPIK+TL PDG ++ ++W+T+P+D
Sbjct: 6 HPKDEAYLSSVIPKRIRLFEEIQAEQLEQLQSRPHDPIKITLLPDGIEKEGRRWETSPMD 65
Query: 103 VARDISKNLAANALIAKVNGVLWDMARPLEEDCELQIFKFNDDEGRDTFWHSSAHILGQS 162
+A ISK LA +AL++ VN VLWDM RPLE DC L+IF F+ D+GR+TFWHSSAHILGQ+
Sbjct: 66 IAVQISKGLAKSALVSSVNHVLWDMNRPLEGDCSLEIFGFDSDQGRNTFWHSSAHILGQA 125
Query: 163 LETEYGCKLCIGPCTTRGEGFYYDA-FYGDLGLNDDHFKQIEA 204
LE EYGCKLCIGPC R EGFYYD+ +YG+LGLND+HF IEA
Sbjct: 126 LEQEYGCKLCIGPCEPRDEGFYYDSLYYGELGLNDNHFPNIEA 168
>AT1G18130.1 | Symbols: | tRNA synthetase-related / tRNA
ligase-related | chr1:6235888-6238792 FORWARD
Length = 165
Score = 206 bits (523), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 101/152 (66%), Positives = 121/152 (79%), Gaps = 4/152 (2%)
Query: 563 LDFQLPDRFKLEYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPLWLSPRQAI 622
+DF L DRFKLEYSAE+E IER V+IHRA+L SVER+FAILLE YKGK+P WLSPRQAI
Sbjct: 17 VDFHLRDRFKLEYSAENETMIERSVLIHRAVLSSVERLFAILLEQYKGKFPFWLSPRQAI 76
Query: 623 VCPVSEKSQAYALQVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANT 682
VC VSE ++YA +VRDQIH+AGY+VD DTTDR + KV+EAQ+A YNYILVVG+EEA T
Sbjct: 77 VCSVSEDYRSYADKVRDQIHEAGYYVDVDTTDRNVSDKVQEAQVAHYNYILVVGDEEART 136
Query: 683 GQVSVRVRDKADHSVMSIENLLKHFSDEVAAF 714
GQV+V +RD+ +MSIE L F + A F
Sbjct: 137 GQVTVWLRDE----MMSIETLSDEFKLKTANF 164