Miyakogusa Predicted Gene

chr2.CM0031.340.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0031.340.nc - phase: 0 
         (886 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G21160.1 | Symbols:  | La domain-containing protein / proline...   571   e-163
AT4G35890.1 | Symbols:  | La domain-containing protein | chr4:16...    96   1e-19
AT5G66100.1 | Symbols:  | La domain-containing protein | chr5:26...    90   7e-18
AT5G46250.1 | Symbols:  | RNA recognition motif (RRM)-containing...    74   3e-13
AT5G46250.2 | Symbols:  | RNA recognition motif (RRM)-containing...    74   4e-13
AT5G46250.3 | Symbols:  | RNA recognition motif (RRM)-containing...    74   4e-13
AT2G43970.2 | Symbols:  | La domain-containing protein | chr2:18...    54   6e-07
AT2G43970.1 | Symbols:  | La domain-containing protein | chr2:18...    54   6e-07
AT3G19090.1 | Symbols:  | RNA-binding protein, putative | chr3:6...    50   8e-06

>AT5G21160.1 | Symbols:  | La domain-containing protein /
           proline-rich family protein | chr5:7199194-7203882
           REVERSE
          Length = 826

 Score =  571 bits (1471), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 326/640 (50%), Positives = 405/640 (63%), Gaps = 79/640 (12%)

Query: 240 SIRGPHPRHFVSYPVNPTPQPMPPETLALRTSIIKQIEYYFSDENLQNDRYLISLMDEQG 299
           +IRGP+P  F  YPVN  P  + PE L LR  ++KQ+EYYFSDENL+ND YLISLMDE+G
Sbjct: 250 AIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEG 309

Query: 300 WVPISTVAGFKRVKRMSSDIAFIIDALQSSNTVEVQGDKIRKSNDWSKWIQVSSGNSGSS 359
           WVP   +AGFKRVK M+ D+ FI+ AL  SN+VEVQGD+IRK + WS W           
Sbjct: 310 WVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDW----------- 358

Query: 360 TAQIQQSRLVKGADNSQNIDALGDKTMESSNEDHRDAAHNSVSMEHNQSNKDASQISHLK 419
                    +  +  S + + +GD   +S           S++   N  N          
Sbjct: 359 ---------IPASKKSTSAETIGDGDKDSPK---------SITSGDNFGNPSKGSSKPTV 400

Query: 420 REQDTESHHSNDVSHAVTGESVTFSSFDRTNNSCHSQETEPKIFDYDETENMDVLADME- 478
            +  +E   S+                 RTNN               ++ N+   AD + 
Sbjct: 401 SDFSSEGAQSS-----------------RTNNY--------------KSGNLKSSADEKR 429

Query: 479 -IGDHSNDFGNTFMLDEEIELEQKMLKKSEVSSPTRIDDEDDEMAVIEQDVQRLVIVTQN 537
            + D SNDF NTF+LDEE++LE +  +KS +S    I+ EDD+MAV +QD+Q+LVIVTQN
Sbjct: 430 NVEDLSNDFSNTFLLDEELDLEHRSPRKSGLSMSKSIEYEDDDMAVDDQDIQKLVIVTQN 489

Query: 538 GDPKQGSGDGGKESKSISNELASAINDGLYFYEQELKHRRSNRRKNN--CDNRGRNLKSP 595
                G+G GG E+K+I  ELAS INDGLY++EQELK +RS RRKNN   D +   +KS 
Sbjct: 490 SGKSDGAGIGGTEAKNIPKELASTINDGLYYFEQELKKKRSGRRKNNSHLDTKDGKIKSG 549

Query: 596 SQTSGVLNMKVGENTGGSSVPEEVGSNNSRRKQ-KVFPKQQSSIKQRFFSSNFRNHGTGR 654
                 LN K+GEN+  +   EE G   SRRKQ K   K  ++  +RFFSSN RN+G   
Sbjct: 550 EG----LNTKLGENSAANDGGEEHGIITSRRKQNKGTHKHHTAHARRFFSSNIRNNGNIS 605

Query: 655 NSHGVISESPPSNSVGFFFASTPPENHGLKPSIXXXXXXXXXXXXXXXXXXTPKSFPPFQ 714
            S         S+S+GFFF STPP++HG + S                    PKSFPPFQ
Sbjct: 606 ESPP-------SSSIGFFFGSTPPDSHGPRLSKLSSSPQCTLSGSSPPVGSLPKSFPPFQ 658

Query: 715 HPSHQLLEENGFKQQKYLKYQKRCLNERKKLGVGCSEEMNTLYRFWSYFLRDLFVPSMYN 774
           HPSHQLLEENGFKQ+KYLKY+KRCLNERKKLG GCSEEMN LYRFWSYFLRD FV SMY+
Sbjct: 659 HPSHQLLEENGFKQEKYLKYRKRCLNERKKLGSGCSEEMNHLYRFWSYFLRDTFVLSMYD 718

Query: 775 EFKKLAMEDAAANYHYGMECLFRFFSYGLEKEFRDDLYKDFEQLSLDFYHKGNLYGLEKY 834
           +F+K A+EDAA NY YG+ECLFRF+SYGLEK F +DLYKDFE+LSLDFYHKGNLYGLEKY
Sbjct: 719 DFQKFALEDAAGNYDYGLECLFRFYSYGLEKHFDEDLYKDFEKLSLDFYHKGNLYGLEKY 778

Query: 835 WAFHHYRKLRNQKEPLHKHPELEKLLREEYRSLEDFRAKE 874
           WAFHHY   R ++EP+ KHPELEKLL+EE+RS++DFRAKE
Sbjct: 779 WAFHHY---RGKEEPITKHPELEKLLKEEFRSIDDFRAKE 815


>AT4G35890.1 | Symbols:  | La domain-containing protein |
           chr4:16997436-17000413 FORWARD
          Length = 523

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 58/82 (70%)

Query: 268 LRTSIIKQIEYYFSDENLQNDRYLISLMDEQGWVPISTVAGFKRVKRMSSDIAFIIDALQ 327
           L   + KQI+YYFSDENL  D YL   M+ +G+VP+  VAGFK+V  ++ +I  I++ALQ
Sbjct: 369 LHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQ 428

Query: 328 SSNTVEVQGDKIRKSNDWSKWI 349
           +S  VEVQGD IRK ++W  W+
Sbjct: 429 NSPHVEVQGDFIRKRDNWQNWV 450


>AT5G66100.1 | Symbols:  | La domain-containing protein |
           chr5:26444865-26446998 FORWARD
          Length = 453

 Score = 89.7 bits (221), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 58/82 (70%)

Query: 268 LRTSIIKQIEYYFSDENLQNDRYLISLMDEQGWVPISTVAGFKRVKRMSSDIAFIIDALQ 327
           L   I+ Q+EYYFS +NL  D +L   M+++GWVP+  +A F+R+  ++++I  I++AL+
Sbjct: 335 LYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALR 394

Query: 328 SSNTVEVQGDKIRKSNDWSKWI 349
           SS  VE+QG+ +R+  DW K++
Sbjct: 395 SSEVVEIQGETLRRRGDWDKYL 416


>AT5G46250.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr5:18772615-18775283 FORWARD
          Length = 422

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 268 LRTSIIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDA 325
           L   II+Q+EYYFSDENL  D++L++ M  +++G+VPIST+A F ++K+++ D A I+ A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 326 LQSSNTVEVQGDK 338
           L+ S+ + V  D+
Sbjct: 163 LKESSFLVVSADE 175


>AT5G46250.2 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr5:18772615-18774950 FORWARD
          Length = 340

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 268 LRTSIIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDA 325
           L   II+Q+EYYFSDENL  D++L++ M  +++G+VPIST+A F ++K+++ D A I+ A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 326 LQSSNTVEVQGDK 338
           L+ S+ + V  D+
Sbjct: 163 LKESSFLVVSADE 175


>AT5G46250.3 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr5:18772615-18774950 FORWARD
          Length = 340

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 268 LRTSIIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDA 325
           L   II+Q+EYYFSDENL  D++L++ M  +++G+VPIST+A F ++K+++ D A I+ A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 326 LQSSNTVEVQGDK 338
           L+ S+ + V  D+
Sbjct: 163 LKESSFLVVSADE 175


>AT2G43970.2 | Symbols:  | La domain-containing protein |
           chr2:18212611-18215107 REVERSE
          Length = 529

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 4/74 (5%)

Query: 272 IIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDALQSS 329
           I+ Q+EYYFSD NL    +L+  +  D +G+VPI  VA FK++K + ++ + +   LQ+S
Sbjct: 197 IVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNS 256

Query: 330 NTVEVQ--GDKIRK 341
             + V   G K+R+
Sbjct: 257 AKLFVSEDGKKVRR 270


>AT2G43970.1 | Symbols:  | La domain-containing protein |
           chr2:18212611-18215107 REVERSE
          Length = 545

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 4/74 (5%)

Query: 272 IIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDALQSS 329
           I+ Q+EYYFSD NL    +L+  +  D +G+VPI  VA FK++K + ++ + +   LQ+S
Sbjct: 197 IVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNS 256

Query: 330 NTVEVQ--GDKIRK 341
             + V   G K+R+
Sbjct: 257 AKLFVSEDGKKVRR 270


>AT3G19090.1 | Symbols:  | RNA-binding protein, putative |
           chr3:6601472-6603715 FORWARD
          Length = 455

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 4/83 (4%)

Query: 268 LRTSIIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDA 325
           LR  I+KQ+EY F+D +L  +  +   +  D +G+VP+S +A  K++K ++S+   +  A
Sbjct: 144 LRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLA 203

Query: 326 LQSSNTVEVQ--GDKIRKSNDWS 346
           L+SS+ + V   G K+++++ ++
Sbjct: 204 LRSSSKLVVSEDGKKVKRTSQFT 226