Miyakogusa Predicted Gene
- chr2.CM0018.600.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0018.600.nd + phase: 0 /pseudo/partial
(423 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10070.1 | Symbols: | KH domain-containing protein | chr4:62... 219 2e-57
AT1G33680.1 | Symbols: | nucleic acid binding | chr1:12204036-1... 203 1e-52
AT2G25970.1 | Symbols: | KH domain-containing protein | chr2:11... 165 6e-41
AT5G04430.2 | Symbols: | KH domain-containing protein NOVA, put... 58 9e-09
AT5G04430.1 | Symbols: | KH domain-containing protein NOVA, put... 58 1e-08
AT1G51580.1 | Symbols: | KH domain-containing protein | chr1:19... 48 9e-06
AT5G64390.2 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); nucleic aci... 48 1e-05
AT5G64390.1 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); nucleic aci... 47 2e-05
AT5G15270.1 | Symbols: | KH domain-containing protein | chr5:49... 44 2e-04
AT5G15270.2 | Symbols: | KH domain-containing protein | chr5:49... 44 2e-04
AT1G14170.1 | Symbols: | KH domain-containing protein | chr1:48... 44 3e-04
AT1G14170.2 | Symbols: | KH domain-containing protein | chr1:48... 44 3e-04
AT1G14170.3 | Symbols: | KH domain-containing protein | chr1:48... 43 3e-04
AT5G53060.1 | Symbols: | KH domain-containing protein | chr5:21... 43 4e-04
>AT4G10070.1 | Symbols: | KH domain-containing protein |
chr4:6295604-6299755 REVERSE
Length = 725
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/160 (70%), Positives = 136/160 (85%), Gaps = 1/160 (0%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
VGVLIGK G+TIRYLQ NSGAKIQI RD +ADP SA RPVE+IG++ IE AEKL+SAVI
Sbjct: 187 VGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGSVACIESAEKLISAVI 246
Query: 61 AEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQ 120
AEA+AGGSPALVARG A+ EQI+++VPN+KVGLIIGRGGETIK++QT+SGAR Q
Sbjct: 247 AEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPNDKVGLIIGRGGETIKNMQTRSGARTQ 306
Query: 121 LIPQHLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVMSQH 160
LIPQH EGD KERTV+++GDK QI++A +MIK+VM+Q+
Sbjct: 307 LIPQHA-EGDGLKERTVRISGDKMQIDIATDMIKDVMNQN 345
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 90 LQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQHLPEGDDSKE-RTVQVTGDKRQIEV 148
+ VP+ KVG++IG+GGETI+ LQ SGA+IQ++ E D S R V++ G IE
Sbjct: 180 IDVPSSKVGVLIGKGGETIRYLQFNSGAKIQIL--RDSEADPSSALRPVEIIGSVACIES 237
Query: 149 AQEMIKEVMSQ 159
A+++I V+++
Sbjct: 238 AEKLISAVIAE 248
>AT1G33680.1 | Symbols: | nucleic acid binding |
chr1:12204036-12208262 FORWARD
Length = 763
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/166 (63%), Positives = 134/166 (80%), Gaps = 10/166 (6%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
VG LIGK G+ +RYLQ+NSGAKIQI RD +ADP SA RPVE+IGT+ IEKAEKL++AVI
Sbjct: 243 VGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIGTVSCIEKAEKLINAVI 302
Query: 61 AEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQ 120
AE +AGG PAL ARG+ EQ++++VP++KVG+IIGRGGETIK++QTKS ARIQ
Sbjct: 303 AEVEAGGVPALAARGV--------PEQMEIKVPSDKVGVIIGRGGETIKNMQTKSRARIQ 354
Query: 121 LIPQHLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVMSQHRQHIPF 166
LIPQ+ EGD SKERTV+++GDKRQI++A +IK+VM Q + P+
Sbjct: 355 LIPQN--EGDASKERTVRISGDKRQIDIATALIKDVMYQDGRPSPY 398
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 90 LQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQHLPEGDDSKE-RTVQVTGDKRQIEV 148
+ VP+ KVG +IG+GGE ++ LQ SGA+IQ+ + E D S R V++ G IE
Sbjct: 236 IDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQI--RRDAEADPSSALRPVEIIGTVSCIEK 293
Query: 149 AQEMIKEVMSQ 159
A+++I V+++
Sbjct: 294 AEKLINAVIAE 304
>AT2G25970.1 | Symbols: | KH domain-containing protein |
chr2:11078922-11082682 REVERSE
Length = 632
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 119/158 (75%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
VGV+IGK G+TI+YLQL SGAKIQ+TRD+DADP+ ATR V+L GT + I KAE+L++ V+
Sbjct: 145 VGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLITDVL 204
Query: 61 AEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQ 120
EA+AG + G G++Q +++PN KVGLIIG+GGETIKS+Q K+GARIQ
Sbjct: 205 QEAEAGNTAGSGGGGGRRMGGQAGADQFVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQ 264
Query: 121 LIPQHLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVMS 158
+IP HLP GD + ERT+Q+ G QIE A++++ E++S
Sbjct: 265 VIPLHLPPGDPTPERTLQIDGITEQIEHAKQLVNEIIS 302
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 89 QLQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEV 148
++ +PN +VG+IIG+GGETIK LQ +SGA+IQ+ + + + RTV +TG QI
Sbjct: 137 KIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVT-RDMDADPNCATRTVDLTGTPDQISK 195
Query: 149 AQEMIKEVM 157
A+++I +V+
Sbjct: 196 AEQLITDVL 204
>AT5G04430.2 | Symbols: | KH domain-containing protein NOVA,
putative | chr5:1250603-1253524 REVERSE
Length = 334
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 20/128 (15%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKA-----EKL 55
G +IGK G TI Q SGA+IQ++R+ + P + R + + G+++ + +KL
Sbjct: 46 AGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILDKL 105
Query: 56 MSAVIAEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKS 115
S + AE V +I+L VPN G IIG+GG TIKS +S
Sbjct: 106 HSELHAE---------------DGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEES 150
Query: 116 GARIQLIP 123
A I++ P
Sbjct: 151 KAGIKISP 158
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 51/199 (25%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
G +IGK G TI+ S A I+I+ + + R V L GT E +A L+ A +
Sbjct: 132 CGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQMRAIDLILAKL 191
Query: 61 AEAD------------AG-------GSPALVARGLSPAQAVVG----------------- 84
E D AG G P A P+ A G
Sbjct: 192 TEDDHYSQNVHSPYSYAGLFYSGFHGPPYAYAL---PSVATAGYNSVNYAPNGSGGKYQN 248
Query: 85 -----SEQIQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQHLPEGD---DSKERT 136
S + + V +E +GL++GRGG I + +GARI++ + GD + +R
Sbjct: 249 HKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDR----GDFMSGTTDRK 304
Query: 137 VQVTGDKRQIEVAQEMIKE 155
V +TG +R I+ A+ MIK+
Sbjct: 305 VSITGPQRAIQQAETMIKQ 323
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 62 EADAGGSPALVAR------GLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKS 115
E+ A GSP +A+ S A + I+ V N G +IG+GG TI Q KS
Sbjct: 5 ESYAAGSPEELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKS 64
Query: 116 GARIQLI--PQHLPEGDDSKERTVQVTGDKRQIEVAQEMI 153
GARIQL + P + +R + ++G +++ E+I
Sbjct: 65 GARIQLSRNQEFFP---GTTDRIIMISGSIKEVVNGLELI 101
>AT5G04430.1 | Symbols: | KH domain-containing protein NOVA,
putative | chr5:1250603-1253524 REVERSE
Length = 313
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 20/128 (15%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKA-----EKL 55
G +IGK G TI Q SGA+IQ++R+ + P + R + + G+++ + +KL
Sbjct: 46 AGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILDKL 105
Query: 56 MSAVIAEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKS 115
S + AE V +I+L VPN G IIG+GG TIKS +S
Sbjct: 106 HSELHAE---------------DGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEES 150
Query: 116 GARIQLIP 123
A I++ P
Sbjct: 151 KAGIKISP 158
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 24/175 (13%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
G +IGK G TI+ S A I+I+ + + R V L GT E +A L+ A +
Sbjct: 132 CGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQMRAIDLILAKL 191
Query: 61 AEADAGG----SPALVARGLSPAQAV-------------VGSEQIQLQVPNEKVGLIIGR 103
E D SP A G + S + + V +E +GL++GR
Sbjct: 192 TEDDHYSQNVHSPYSYAAGYNSVNYAPNGSGGKYQNHKEEASTTVTIGVADEHIGLVLGR 251
Query: 104 GGETIKSLQTKSGARIQLIPQHLPEGD---DSKERTVQVTGDKRQIEVAQEMIKE 155
GG I + +GARI++ + GD + +R V +TG +R I+ A+ MIK+
Sbjct: 252 GGRNIMEITQMTGARIKISDR----GDFMSGTTDRKVSITGPQRAIQQAETMIKQ 302
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 62 EADAGGSPALVAR------GLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKS 115
E+ A GSP +A+ S A + I+ V N G +IG+GG TI Q KS
Sbjct: 5 ESYAAGSPEELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKS 64
Query: 116 GARIQL 121
GARIQL
Sbjct: 65 GARIQL 70
>AT1G51580.1 | Symbols: | KH domain-containing protein |
chr1:19129280-19131770 FORWARD
Length = 621
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADP-HSATRPVELIGTLESIEKAEKLMSAV 59
VG LIGK G +R LQ SGA I+++ DP H + + +I E++E+ L
Sbjct: 287 VGSLIGKGGAVVRALQNESGASIKVS-----DPTHDSEERIIVISARENLERRHSLAQDG 341
Query: 60 IAEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKSGARI 119
+ +V G P+ AVV +L V + +G ++G+GG I ++ +GA I
Sbjct: 342 VMRVHN----RIVEIGFEPSAAVVA----RLLVHSPYIGRLLGKGGHLISEMRRATGASI 393
Query: 120 QLIPQHLPEGDDSK-ERTVQVTGDKRQIEVA 149
++ + +S+ + VQV G+ + ++ A
Sbjct: 394 RVFAKDQATKYESQHDEIVQVIGNLKTVQDA 424
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 41/192 (21%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPV--ELIGTLESIEKAEKLMSA 58
V L+ K G I+ ++ +SGA ++I+ P + V ++ G S++KA L++
Sbjct: 159 VDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTN 218
Query: 59 VIAEADAGGS----------------------------PALVARGLSPAQAVVGSEQIQL 90
+ E+ A + P + + P V E++
Sbjct: 219 CLQESGAPPTWDECPFPQPGYPPEYHSMEYHPQWDHPPPNPMPEDVGPFNRPVVEEEVAF 278
Query: 91 Q--VPNEKVGLIIGRGGETIKSLQTKSGARIQLI-PQHLPEGDDSKERTVQVTGD---KR 144
+ P +KVG +IG+GG +++LQ +SGA I++ P H DS+ER + ++ +R
Sbjct: 279 RLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTH-----DSEERIIVISARENLER 333
Query: 145 QIEVAQEMIKEV 156
+ +AQ+ + V
Sbjct: 334 RHSLAQDGVMRV 345
>AT5G64390.2 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); nucleic acid
binding | chr5:25760668-25763968 FORWARD
Length = 824
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 19/155 (12%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
VG +IGK+G+ I+ LQ ++GAKI++ +P S + P +I + + ++
Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRVE-----EPPSGS-PDRVITIIAQADSKSRVKLGAN 111
Query: 61 AEADAGGSPALVARGLSPAQ-----------AVVGSEQI--QLQVPNEKVGLIIGRGGET 107
+A G +S AQ A S+ + +L + G +IG+GG+
Sbjct: 112 NNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVVCRLLTESSHAGAVIGKGGQM 171
Query: 108 IKSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGD 142
+ S++ ++G +I + ++LP D+ + V+V G+
Sbjct: 172 VGSIRKETGCKISIRIENLPICADTDDEMVEVEGN 206
>AT5G64390.1 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); nucleic acid
binding | chr5:25760668-25764606 FORWARD
Length = 857
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 19/155 (12%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
VG +IGK+G+ I+ LQ ++GAKI++ +P S + P +I + + ++
Sbjct: 58 VGAVIGKSGNVIKQLQQSTGAKIRVE-----EPPSGS-PDRVITIIAQADSKSRVKLGAN 111
Query: 61 AEADAGGSPALVARGLSPAQ-----------AVVGSEQI--QLQVPNEKVGLIIGRGGET 107
+A G +S AQ A S+ + +L + G +IG+GG+
Sbjct: 112 NNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVVCRLLTESSHAGAVIGKGGQM 171
Query: 108 IKSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGD 142
+ S++ ++G +I + ++LP D+ + V+V G+
Sbjct: 172 VGSIRKETGCKISIRIENLPICADTDDEMVEVEGN 206
>AT5G15270.1 | Symbols: | KH domain-containing protein |
chr5:4958741-4960950 FORWARD
Length = 548
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 86/152 (56%), Gaps = 18/152 (11%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLE---SIEKAEKLMS 57
+G +IG+ GD ++ L+ ++ +KI+I +A P R + + + + EK++S
Sbjct: 61 IGSVIGRGGDIVKQLRNDTRSKIRIG---EAIPGCDERVITIYSPSDETNAFGDGEKVLS 117
Query: 58 ----AVIAEADAGGSPALVARGLSPAQAVVGSEQI--QLQVPNEKVGLIIGRGGETIKSL 111
A+ D +VA + G +Q+ +L VP++++G I+GRGG+ ++++
Sbjct: 118 PAQDALFRIHDR-----VVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNI 172
Query: 112 QTKSGARIQLI-PQHLPEGDDSKERTVQVTGD 142
++++GA+I+++ +++P + + +Q++G+
Sbjct: 173 RSETGAQIRIVKDRNMPLCALNSDELIQISGE 204
>AT5G15270.2 | Symbols: | KH domain-containing protein |
chr5:4958741-4960950 FORWARD
Length = 548
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 86/152 (56%), Gaps = 18/152 (11%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLE---SIEKAEKLMS 57
+G +IG+ GD ++ L+ ++ +KI+I +A P R + + + + EK++S
Sbjct: 61 IGSVIGRGGDIVKQLRNDTRSKIRIG---EAIPGCDERVITIYSPSDETNAFGDGEKVLS 117
Query: 58 ----AVIAEADAGGSPALVARGLSPAQAVVGSEQI--QLQVPNEKVGLIIGRGGETIKSL 111
A+ D +VA + G +Q+ +L VP++++G I+GRGG+ ++++
Sbjct: 118 PAQDALFRIHDR-----VVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNI 172
Query: 112 QTKSGARIQLI-PQHLPEGDDSKERTVQVTGD 142
++++GA+I+++ +++P + + +Q++G+
Sbjct: 173 RSETGAQIRIVKDRNMPLCALNSDELIQISGE 204
>AT1G14170.1 | Symbols: | KH domain-containing protein |
chr1:4843460-4845250 REVERSE
Length = 454
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 32/40 (80%)
Query: 88 IQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQHLP 127
+++ VP++++G +IG+GG+ I++L+ + A+I++I HLP
Sbjct: 123 VRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLP 162
>AT1G14170.2 | Symbols: | KH domain-containing protein |
chr1:4843460-4845250 REVERSE
Length = 446
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 32/40 (80%)
Query: 88 IQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQHLP 127
+++ VP++++G +IG+GG+ I++L+ + A+I++I HLP
Sbjct: 115 VRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLP 154
>AT1G14170.3 | Symbols: | KH domain-containing protein |
chr1:4843460-4845250 REVERSE
Length = 479
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 32/40 (80%)
Query: 88 IQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQHLP 127
+++ VP++++G +IG+GG+ I++L+ + A+I++I HLP
Sbjct: 148 VRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLP 187
>AT5G53060.1 | Symbols: | KH domain-containing protein |
chr5:21532581-21535423 FORWARD
Length = 652
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPH-----SATRPVELIGTLESIEKAEKL 55
G +IGK+G I+ ++ ++GA I + V D S R + G + S A++
Sbjct: 79 AGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGRMPSFSPAQEA 138
Query: 56 MSAV---IAEADA----GGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETI 108
+ +V I E++A GG P + G +L V VG ++G+GG+ I
Sbjct: 139 LFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGCLLGKGGKII 198
Query: 109 KSLQTKSGARIQLIPQ--HLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVM--SQHRQHI 164
+ ++ ++ I+++P+ +LP E VQ+ G+ ++ A ++ + SQHR
Sbjct: 199 EQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSRLRESQHRDRS 258
Query: 165 PFH 167
F
Sbjct: 259 NFQ 261