Miyakogusa Predicted Gene
- chr2.CM0018.160.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0018.160.nd - phase: 0 /partial
(265 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51510.1 | Symbols: Y14 | Y14; RNA binding / protein binding ... 246 9e-66
AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG... 57 1e-08
AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG... 57 1e-08
AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-bindi... 55 5e-08
AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-bindi... 55 5e-08
AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTE... 53 2e-07
AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing... 51 6e-07
AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding | chr4:1... 51 9e-07
AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic tra... 50 1e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 3e-06
AT5G06210.1 | Symbols: | RNA-binding protein, putative | chr5:1... 49 4e-06
AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 4e-06
AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL PR... 48 7e-06
AT1G71800.1 | Symbols: | cleavage stimulation factor, putative ... 48 8e-06
AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN ... 47 1e-05
AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 47 1e-05
AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 47 1e-05
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 47 2e-05
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 47 2e-05
AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 2e-05
AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1/PARL1 (PARALLE... 46 2e-05
AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein | chr... 46 3e-05
AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 46 3e-05
AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-bindi... 46 3e-05
AT5G06000.1 | Symbols: ATEIF3G2, EIF3G2 | EIF3G2 (eukaryotic tra... 46 3e-05
AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); ... 45 3e-05
AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing... 45 3e-05
AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing... 45 3e-05
AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70 ... 45 4e-05
AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:1... 45 5e-05
AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing facto... 45 5e-05
AT2G37510.1 | Symbols: | RNA-binding protein, putative | chr2:1... 45 5e-05
AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); ... 45 5e-05
AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing... 45 5e-05
AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); ... 45 5e-05
AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEI... 45 6e-05
AT1G03457.2 | Symbols: | RNA-binding protein, putative | chr1:8... 45 6e-05
AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 7e-05
AT1G03457.1 | Symbols: | RNA-binding protein, putative | chr1:8... 44 8e-05
AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3... 44 8e-05
AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 44 8e-05
AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RN... 44 9e-05
AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 44 1e-04
AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 44 1e-04
AT3G54230.1 | Symbols: | nucleic acid binding | chr3:20084850-2... 44 1e-04
AT3G12640.1 | Symbols: | RNA binding / nucleic acid binding | c... 44 1e-04
AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 1e-04
AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein, puta... 44 1e-04
AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein, puta... 44 1e-04
AT4G03110.2 | Symbols: | RNA-binding protein, putative | chr4:1... 43 2e-04
AT1G07350.1 | Symbols: | transformer serine/arginine-rich ribon... 43 2e-04
AT3G18610.1 | Symbols: ATRANGAP1 | ATRANGAP1 (RAN GTPASE-ACTIVAT... 43 2e-04
AT5G41690.1 | Symbols: | RNA binding | chr5:16687354-16691417 R... 43 2e-04
AT4G03110.1 | Symbols: | RNA-binding protein, putative | chr4:1... 43 2e-04
AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 43 2e-04
AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 43 2e-04
AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); ... 43 2e-04
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2086710... 43 2e-04
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2086710... 43 2e-04
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2086710... 43 2e-04
AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); ... 42 3e-04
AT1G07350.2 | Symbols: | transformer serine/arginine-rich ribon... 42 3e-04
AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA... 42 3e-04
AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing... 42 3e-04
AT3G14100.1 | Symbols: | oligouridylate-binding protein, putati... 42 4e-04
AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633 F... 42 4e-04
AT5G19030.2 | Symbols: | RNA recognition motif (RRM)-containing... 42 4e-04
AT5G18810.1 | Symbols: SCL28 | SCL28 (SC35-like splicing factor ... 42 4e-04
AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 41 7e-04
AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 41 7e-04
AT1G53720.1 | Symbols: ATCYP59, CYP59 | ATCYP59/CYP59 (CYCLOPHIL... 41 7e-04
AT3G08000.1 | Symbols: | RNA-binding protein, putative | chr3:2... 41 8e-04
>AT1G51510.1 | Symbols: Y14 | Y14; RNA binding / protein binding |
chr1:19106740-19108421 REVERSE
Length = 202
Score = 246 bits (628), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 124/188 (65%), Positives = 153/188 (81%), Gaps = 8/188 (4%)
Query: 8 EGEALDFEPEDDDLMDEDGAP--DADASPP--HPKLKSAITSGAAPSLSAPKKTKGRGFR 63
E EA+DFEPE+DDLMDE+G AD SP HP+LKSAI A + + KKTKGRGFR
Sbjct: 5 ESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAI---AGANGESAKKTKGRGFR 61
Query: 64 QETDTNRNNRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEI 123
+E D++R RLS DF+SL ++G PGPQRS+EGWIILV+GVHEE QE+D+ NAFG++GEI
Sbjct: 62 EEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEI 121
Query: 124 KNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPI-NES 182
KNL+LNLDRR+G+VKGYALIEYE+ EEA++AI +NG+ELLTQN+ VDWAFSSGP ES
Sbjct: 122 KNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPSGGES 181
Query: 183 IRRKNARH 190
RRKN+R+
Sbjct: 182 YRRKNSRY 189
>AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
Length = 303
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 86 GGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEY 145
G GP + + +LV + DDL F +YG++ ++ + DRRTG +G+A + Y
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 146 ERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESI 183
+ +EA A+E L+G + + I V +A GP E I
Sbjct: 65 KYKDEAHKAVERLDGRVVDGREITVQFA-KYGPNAEKI 101
>AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
Length = 303
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 86 GGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEY 145
G GP + + +LV + DDL F +YG++ ++ + DRRTG +G+A + Y
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 146 ERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESI 183
+ +EA A+E L+G + + I V +A GP E I
Sbjct: 65 KYKDEAHKAVERLDGRVVDGREITVQFA-KYGPNAEKI 101
>AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding
protein 5); RNA binding | chr1:27919007-27920518 FORWARD
Length = 289
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 92 RSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEA 151
R + I V G+ E L+ AF +YGE+ + + +DR TG +G+A + + EEA
Sbjct: 29 RCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEA 88
Query: 152 KNAIENLNGSELLTQNIYVDWA 173
NA++ L+G +L + I V++A
Sbjct: 89 SNAMQ-LDGQDLHGRRIRVNYA 109
>AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding
protein 3); RNA binding | chr5:24578096-24579378 FORWARD
Length = 309
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 92 RSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEA 151
R + + + G+ ED L+ AF +YGE+ + + LDR TG +G+ + + +E A
Sbjct: 35 RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94
Query: 152 KNAIENLNGSELLTQNIYVDWA 173
+AI+ L+G +L + + V++A
Sbjct: 95 SSAIQALDGRDLHGRVVKVNYA 116
>AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTEIN
2); RNA binding | chr4:16337714-16339896 FORWARD
Length = 443
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V + E +DDL+NAFGEYG+I + + D G KG+ + +E A++A A+E+L
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 89
Query: 159 NGSELLTQNIYVDWA 173
NG + + YV A
Sbjct: 90 NGHKFDDKEWYVGRA 104
>AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:27647462-27649047 REVERSE
Length = 181
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 53/93 (56%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V+G+ ED L++ F ++G + ++++ +D+ KG+A + YE EEA AI+ +
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 159 NGSELLTQNIYVDWAFSSGPINESIRRKNARHP 191
+G L + I+V+ A + ++ + R++ P
Sbjct: 139 HGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKP 171
>AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding |
chr4:13554989-13557769 REVERSE
Length = 415
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 98 IILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIEN 157
I V V + EDDL++ FG++GE+ ++ + +R GFV +Y A+ A+
Sbjct: 279 TIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFV------QYANRACAEQALSV 332
Query: 158 LNGSELLTQNIYVDWAFS 175
LNG++L Q+I + W S
Sbjct: 333 LNGTQLGGQSIRLSWGRS 350
>AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic
translation initiation factor 3G1); RNA binding /
translation initiation factor | chr3:3578542-3580372
FORWARD
Length = 294
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ VT + E+ +E DL F +G + +++ +D++TG +G+ + + E+A+ AI L
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 159 NGSELLTQNIYVDWA 173
NG + V+WA
Sbjct: 275 NGYGYDNLILRVEWA 289
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17362319-17363754 REVERSE
Length = 352
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V G+ + E DL F +YGEI +++L D+ TG KG+A + YE A++NL
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 159 NGSELLTQNIYVDWAFSSGPI---NESIRRKNARHPVMNLNIYFKTGQLVIGAPGALAGD 215
NG+ +L + I VD + +E RR+N + F+ G+ G + D
Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEEDEETRRQN--REARGVCRAFQRGECTRGDSCKFSHD 155
>AT5G06210.1 | Symbols: | RNA-binding protein, putative |
chr5:1878498-1879516 FORWARD
Length = 146
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ + G+ E L AF + G++ + +DR + KG+ + + A+EA+ A+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 159 NGSELLTQNIYVDWA 173
NG +L + I+VD+A
Sbjct: 96 NGQQLNGRTIFVDYA 110
>AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22188558-22189882 FORWARD
Length = 156
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V+G+ + + L+ AF ++GE+ + + DR +G+ KG+ + Y E++ I +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 159 NGSELLTQNIYVDWA 173
+G L I+ ++A
Sbjct: 118 DGKFLDGWVIFAEYA 132
>AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL
PROTEIN U1A); RNA binding | chr3:18837457-18840473
REVERSE
Length = 427
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 98 IILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIEN 157
+ V+ ++ E+ E ++ F YG IK +HL D+ T KGYA IEY + K A +
Sbjct: 139 TLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQ 198
Query: 158 LNGSELLTQNIYVD 171
+G ++ + + VD
Sbjct: 199 ADGQKIDGRRVLVD 212
>AT1G71800.1 | Symbols: | cleavage stimulation factor, putative |
chr1:27003268-27005512 FORWARD
Length = 461
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 93 SIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAK 152
S + + V + +A E+ L+ GE G + + L DR TG KGY EY+ E A
Sbjct: 5 SSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETAL 64
Query: 153 NAIENLNGSELLTQNIYVDWA 173
+A NL E+ + + VD+A
Sbjct: 65 SARRNLQSYEINGRQLRVDFA 85
>AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN
45A); RNA binding | chr5:22312638-22315352 FORWARD
Length = 387
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 98 IILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIEN 157
I V G+ +D+L++ FG++GE+ ++ + +R GFV +Y A++A+
Sbjct: 261 TIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFV------QYANKASAEHALSV 314
Query: 158 LNGSELLTQNIYVDWAFS 175
LNG++L Q+I + W S
Sbjct: 315 LNGTQLGGQSIRLSWGRS 332
>AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636240 FORWARD
Length = 222
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 46/75 (61%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+LV + + +++DL+ +F ++G +K+++L D TG +G+ +++ +A +A ++
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 159 NGSELLTQNIYVDWA 173
+G LL + + V +A
Sbjct: 98 DGYLLLGRELTVVFA 112
>AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636161 FORWARD
Length = 220
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 46/75 (61%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+LV + + +++DL+ +F ++G +K+++L D TG +G+ +++ +A +A ++
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 159 NGSELLTQNIYVDWA 173
+G LL + + V +A
Sbjct: 98 DGYLLLGRELTVVFA 112
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 72 NRLSGSDFDSLTTEGGPGPQRSIEGWI------ILVTGVHEEAQEDDLQNAFGEYGEIKN 125
N+LSG ++ GP S+ G + + V G+ + L+ AF +GE+
Sbjct: 5 NKLSG-ILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTE 63
Query: 126 LHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYVDWA 173
+ DR TG +G+ + + + A NAI+ ++G EL + I V+ A
Sbjct: 64 ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 72 NRLSGSDFDSLTTEGGPGPQRSIEGWI------ILVTGVHEEAQEDDLQNAFGEYGEIKN 125
N+LSG ++ GP S+ G + + V G+ + L+ AF +GE+
Sbjct: 5 NKLSG-ILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTE 63
Query: 126 LHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYVDWA 173
+ DR TG +G+ + + + A NAI+ ++G EL + I V+ A
Sbjct: 64 ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:19236586-19238017 FORWARD
Length = 304
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
I V G+ E Q D ++ F ++GEI + D+ TG KGY + ++ AE A A +N+
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 159 N 159
N
Sbjct: 84 N 84
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1/PARL1 (PARALLEL
1); nucleic acid binding | chr1:18101854-18105090
FORWARD
Length = 557
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEY----GEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNA 154
I V G EDD++N E+ GEIKN+ + +DR TG KG A +E+ +E A
Sbjct: 403 IFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKE--KA 460
Query: 155 IENLNGSEL 163
+E LNGS++
Sbjct: 461 LE-LNGSDM 468
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 112 DLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYVD 171
D++N F E GE+ ++ + +R G +G+ +E+ +EEA+ A+E +G LL + I +D
Sbjct: 312 DVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE-FHGRPLLGREIRLD 370
Query: 172 WAFSSG 177
A G
Sbjct: 371 IAQERG 376
>AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein |
chr5:1192462-1195414 FORWARD
Length = 310
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 95 EGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNA 154
EG I V G+ E + DL+ AF +G+I + + L+R TG +G+ I + +
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 155 IENLNGSELLTQNIYVDWA 173
I ++G + + I V+ A
Sbjct: 65 IREMHGRDFGDRVISVNRA 83
>AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 92
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 100 LVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLN 159
V G+ ++DLQ F ++G++ + + DR +G +G+ + ++ + ++AIE +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 160 GSELLTQNIYVDWAFSSGP 178
G EL + I V+ A S G
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-binding
protein 6); RNA binding | chr1:6415218-6416275 FORWARD
Length = 155
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
I V G+ + L+ AFG +G+I + + LDR +G +G+ + Y+ E A NA++ +
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 159 NGSEL 163
EL
Sbjct: 98 QNKEL 102
>AT5G06000.1 | Symbols: ATEIF3G2, EIF3G2 | EIF3G2 (eukaryotic
translation initiation factor 3G2); RNA binding /
translation initiation factor | chr5:1808170-1809743
FORWARD
Length = 308
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ VT + E+ + DL F +G + H+ +D++T +G+ + + E+A+ AI L
Sbjct: 208 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 267
Query: 159 NGSELLTQNIYVDWA 173
NG + V+W+
Sbjct: 268 NGYGYDNLILRVEWS 282
>AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA
binding / translation initiation factor |
chr1:18420408-18423421 FORWARD
Length = 671
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
I + + + L F +G I + + +D +G KGY ++Y+ E A+ AI+ L
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 159 NGSELLTQNIYVDWAFSSGPINESIRRKNARHPVMNLNIYFK 200
NG L + +YV GP ++R + V N+Y K
Sbjct: 194 NGMLLNDKQVYV------GPFVHKLQRDPSGEKVKFTNVYVK 229
>AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 96 GWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAI 155
G + + G+ + E+DL++ E GEI + L DR +G KGYA + ++ + A+ AI
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 156 ENLNGSELLTQNI 168
E L+ E + I
Sbjct: 175 EELHSKEFKGKTI 187
>AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 96 GWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAI 155
G + + G+ + E+DL++ E GEI + L DR +G KGYA + ++ + A+ AI
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 156 ENLNGSELLTQNI 168
E L+ E + I
Sbjct: 175 EELHSKEFKGKTI 187
>AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70
kDa, putative | chr2:18020508-18022453 FORWARD
Length = 333
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 98 IILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIEN 157
+ V + ED L+ +YG IKNL L TG +GY +EYE +E A E+
Sbjct: 65 TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124
Query: 158 LNGSELLTQNIYVDW 172
+ S + + I VD+
Sbjct: 125 AHHSLIDGREIIVDY 139
>AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C; RNA binding |
chr1:17427241-17429622 FORWARD
Length = 432
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 23/135 (17%)
Query: 52 SAPKKTKGRGFRQETDTNRNNRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQED 111
+ P+KT G ++Q+ N L+ + D + T I V G+ ++
Sbjct: 274 ATPRKTNG--YQQQGGYMPNGTLTRPEGDIMNT-------------TIFVGGLDSSVTDE 318
Query: 112 DLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYVD 171
DL+ F E+GEI ++ + + + GFV+ + AEE A+E LNG+ + Q + +
Sbjct: 319 DLKQPFNEFGEIVSVKIPVGKGCGFVQ---FVNRPNAEE---ALEKLNGTVIGKQTVRLS 372
Query: 172 WAFSSGPINESIRRK 186
W P N+ R K
Sbjct: 373 WG--RNPANKQPRDK 385
>AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing factor
30a); RNA binding | chr3:4429571-4431609 REVERSE
Length = 262
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+LV + + +++DL+ F ++G +K+++L D TG +G+ I++ +A A +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 159 NGSELLTQNIYVDWA 173
+G LL + + V +A
Sbjct: 99 DGYLLLGRELTVVFA 113
>AT2G37510.1 | Symbols: | RNA-binding protein, putative |
chr2:15750190-15751582 REVERSE
Length = 142
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V+G+ + LQ+AF +G++ + + DR +G KG+ + Y E+A+ A +
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 159 NGSELLTQNIYVD 171
N L I+VD
Sbjct: 96 NAKFLDGWVIFVD 108
>AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA
binding | chr1:8055588-8058788 FORWARD
Length = 660
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V + +E ED+L+ FG++G I + + D+ +G + + + +E E A +A+E +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289
Query: 159 NGSELLTQNIYVDWAFSSGPINESIRRK 186
NG L +YV A E +RRK
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRK 317
>AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:7331745-7333755 FORWARD
Length = 374
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ +TG+ E L+ AF +GE+ + + +D+ + KGYA +EY E A A++ +
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 159 NGSELLTQNIYVDWA 173
NG + I VD A
Sbjct: 344 NGKIINGWMIVVDVA 358
>AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA
binding / translation initiation factor |
chr2:9950289-9953121 FORWARD
Length = 662
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V + + L AF G I + + D G +GY ++++ + AKNAIE L
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 159 NGSELLTQNIYVDWAFSSGPINESIRRKNARHPVMNLNIYFK 200
NG L + I+V GP R++A + N+Y K
Sbjct: 195 NGKVLNDKQIFV------GPFLRKEERESAADKMKFTNVYVK 230
>AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEIN
47C'); RNA binding | chr1:17435122-17437245 FORWARD
Length = 434
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 76/196 (38%), Gaps = 47/196 (23%)
Query: 25 DGAPDADASPPHPKLKSAITSGAAPSLSAPK--------KTKGRGFRQETDTNRNNR--- 73
D APD + H S PS+ A K ++KG GF + D N +
Sbjct: 205 DLAPDVSDALLHETF-----SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 74 -LSGSDFDSLTTEGGPGPQRSIEGW----------------------IILVTGVHEEAQE 110
++G S GP R G+ I V G+ +
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 111 DDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYV 170
+DL+ F E+GEI ++ + + + GFV+ + AEE A+E LNG+ + Q + +
Sbjct: 320 EDLKQPFSEFGEIVSVKIPVGKGCGFVQ---FVNRPNAEE---ALEKLNGTVIGKQTVRL 373
Query: 171 DWAFSSGPINESIRRK 186
W P N+ R K
Sbjct: 374 SWG--RNPANKQPRDK 387
>AT1G03457.2 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 438
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 80 DSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKG 139
SL TEG G + + + E ++ +L F +G++ + + +D+ TG K
Sbjct: 329 SSLQTEGPAGAN-------LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKC 381
Query: 140 YALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKN 187
+ I Y+ A+NAI +NG +L + + V +G + + KN
Sbjct: 382 FGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRDNGQQQQQQQSKN 429
>AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9180792-9186145 REVERSE
Length = 1003
Score = 44.3 bits (103), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 86 GGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEY 145
GG G + + W +++ + +A+ D++ F G + ++ + + TG KG+A +++
Sbjct: 322 GGEGSK--AQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
Query: 146 ERAEEAKNAIENLNGSELLTQNIYVDWA 173
++A NAI+ NG + I VDWA
Sbjct: 380 TCKKDAANAIKKFNGHMFGKRPIAVDWA 407
>AT1G03457.1 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 429
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 80 DSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKG 139
SL TEG G + + + E ++ +L F +G++ + + +D+ TG K
Sbjct: 320 SSLQTEGPAGAN-------LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKC 372
Query: 140 YALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKN 187
+ I Y+ A+NAI +NG +L + + V +G + + KN
Sbjct: 373 FGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRDNGQQQQQQQSKN 420
>AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding |
chr1:3914895-3917941 FORWARD
Length = 405
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V G+ +D L+N F +YGEI ++ + +R GFV ++ A+ A+ L
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFV------QFSEKSCAEEALRML 316
Query: 159 NGSELLTQNIYVDWAFS 175
NG +L + + W S
Sbjct: 317 NGVQLGGTTVRLSWGRS 333
>AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr2:15642059-15643410 REVERSE
Length = 289
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 113 LQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYVDW 172
L++ F E G++ + DR +G KG+ + Y+ ++E +NAI++L+G++L + I V
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279
Query: 173 AFSSGP 178
A + P
Sbjct: 280 AEARPP 285
>AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA
binding | chr1:26994439-26997109 REVERSE
Length = 668
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V + +E +D+L+ FG+YG+I + + D+ +G + + + + E A A+E +
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 285
Query: 159 NGSELLTQNIYVDWAFSSGPINESIRRK 186
NG L +YV A E +RRK
Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRK 313
>AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding |
chr2:9272557-9273396 REVERSE
Length = 159
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 100 LVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLN 159
V G+ + L+ AF +YG++ + + DR TG +G+ + ++ + K+AIE +N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 160 GSELLTQNIYVD 171
G +L ++I V+
Sbjct: 71 GQDLDGRSITVN 82
>AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding /
double-stranded DNA binding / single-stranded DNA
binding | chr2:9272557-9273396 REVERSE
Length = 176
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 100 LVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLN 159
V G+ + L+ AF +YG++ + + DR TG +G+ + ++ + K+AIE +N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 160 GSELLTQNIYVD 171
G +L ++I V+
Sbjct: 71 GQDLDGRSITVN 82
>AT3G54230.1 | Symbols: | nucleic acid binding |
chr3:20084850-20091120 FORWARD
Length = 1007
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 98 IILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIEN 157
+++V G+ E+A E+ L+ F ++ IK+L L D+ T +G+A + + E+A A+E
Sbjct: 433 VLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEA 492
Query: 158 LNGSEL 163
N + L
Sbjct: 493 TNRTAL 498
>AT3G12640.1 | Symbols: | RNA binding / nucleic acid binding |
chr3:4014462-4017682 FORWARD
Length = 638
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 80 DSLTTEGGPG------PQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRR 133
+S T + PG P I V VH A +D L F ++GE+ + D
Sbjct: 457 ESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPA 516
Query: 134 TGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYV 170
TG G A IE+ R E A+NA+ +L+G+ +++ + +
Sbjct: 517 TGQPSGSAYIEFTRKEAAENAL-SLDGTSFMSRILKI 552
>AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:7349951-7354134 REVERSE
Length = 561
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V +H EDDL+ F +G ++ + + D TG KG+ +++ R E+A+NA+ NL
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-NL 344
Query: 159 NG 160
NG
Sbjct: 345 NG 346
>AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
I V G+ + E L++ F YG+I + + R TG +G+ I + A +AI+++
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 159 NGSELLTQNIYVDWA 173
+G EL + I V+ A
Sbjct: 74 HGRELGNKVISVNKA 88
>AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
I V G+ + E L++ F YG+I + + R TG +G+ I + A +AI+++
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 159 NGSELLTQNIYVDWA 173
+G EL + I V+ A
Sbjct: 74 HGRELGNKVISVNKA 88
>AT4G03110.2 | Symbols: | RNA-binding protein, putative |
chr4:1376710-1379275 REVERSE
Length = 439
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V + + E ++Q+ F +YG IK+L + L KG A ++YE E+A +A+E++
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQI-LRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 159 NGSELL---TQNIYVDWA 173
NG + T + V WA
Sbjct: 167 NGKHKMEGSTVPLVVKWA 184
>AT1G07350.1 | Symbols: | transformer serine/arginine-rich
ribonucleoprotein, putative | chr1:2257730-2260099
REVERSE
Length = 382
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 90 PQRSIE------GWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALI 143
P RS+ G + VTG+ E DL++ F + G++ ++HL LD T +G+ I
Sbjct: 62 PTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 121
Query: 144 EYERAEEAKNAIENLNGSELLTQNIYVDWA 173
+ +A I +L+ S L + I V+ A
Sbjct: 122 SMKSVGDANRCIRSLDHSVLQGRVITVEKA 151
>AT3G18610.1 | Symbols: ATRANGAP1 | ATRANGAP1 (RAN GTPASE-ACTIVATING
PROTEIN 1); nucleic acid binding | chr3:6404276-6407828
REVERSE
Length = 636
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 112 DLQNAFGEYGEIKNLHLN-LDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYV 170
D++N F E GE+ ++ L+ D G KGY IE+ EEA+ A+E +NG LL +++ +
Sbjct: 399 DIENFFKEAGEVVDVRLSSFD--DGSFKGYGHIEFASPEEAQKALE-MNGKLLLGRDVRL 455
Query: 171 DWAFSSG-PINESIRRK 186
D A G P N + RK
Sbjct: 456 DLANERGTPRNSNPGRK 472
>AT5G41690.1 | Symbols: | RNA binding | chr5:16687354-16691417
REVERSE
Length = 567
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 79 FDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVK 138
+S E P S+E ++ V + + + D+ + F GE+ ++ L ++ V
Sbjct: 168 LESHPIEEDERPPNSVEE-VLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHV- 225
Query: 139 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWA 173
GY +E+ A+E K A+EN NG L I++D A
Sbjct: 226 GYGFVEFASADETKKALENKNGEYLHDHKIFIDVA 260
>AT4G03110.1 | Symbols: | RNA-binding protein, putative |
chr4:1376612-1379275 REVERSE
Length = 441
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V + + E ++Q+ F +YG IK+L + L KG A ++YE E+A +A+E++
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQI-LRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 159 NGSELL---TQNIYVDWA 173
NG + T + V WA
Sbjct: 167 NGKHKMEGSTVPLVVKWA 184
>AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 126
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 100 LVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLN 159
V G+ ++DLQ F ++G++ + + DR +G +G+ + ++ + ++AIE +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 160 GSELLTQNIYVD 171
G EL + I V+
Sbjct: 69 GKELDGRVITVN 80
>AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 169
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 100 LVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLN 159
V G+ ++DLQ F ++G++ + + DR +G +G+ + ++ + ++AIE +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 160 GSELLTQNIYVD 171
G EL + I V+
Sbjct: 69 GKELDGRVITVN 80
>AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); RNA
binding / translation initiation factor |
chr1:12433334-12434713 REVERSE
Length = 407
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLD-----RRTGFVKGYALIEYERAEEAKN 153
+ V + E A + DL+ FGE+GEI + + D RR GFV +E+AE A
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFV------NFEKAEAAVT 174
Query: 154 AIENLNGSELLTQNIYVDWA 173
AIE +NG + + ++V A
Sbjct: 175 AIEKMNGVVVDEKELHVGRA 194
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 109 QEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNI 168
++D L N F +GEI + DR TG KGY ++Y + A A++ +NG + +
Sbjct: 492 EDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTL 551
Query: 169 YVDWAFSS 176
V A S
Sbjct: 552 AVRIAGKS 559
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 109 QEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNI 168
++D L N F +GEI + DR TG KGY ++Y + A A++ +NG + +
Sbjct: 492 EDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTL 551
Query: 169 YVDWAFSS 176
V A S
Sbjct: 552 AVRIAGKS 559
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 109 QEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNI 168
++D L N F +GEI + DR TG KGY ++Y + A A++ +NG + +
Sbjct: 492 EDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTL 551
Query: 169 YVDWAFSS 176
V A S
Sbjct: 552 AVRIAGKS 559
>AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); RNA
binding / translation initiation factor |
chr2:15368555-15371477 REVERSE
Length = 609
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 107 EAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQ 166
+ ED L+ F E+G+I +L + D +GYA + ++ E+A+ A E +NG++ ++
Sbjct: 211 DVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSK 269
Query: 167 NIYVDWAFSSGPINESIRRK-NARHPVMNL-----NIYFKTGQLVI 206
+YV A + +R + +H + NIY K + +
Sbjct: 270 CLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAV 315
>AT1G07350.2 | Symbols: | transformer serine/arginine-rich
ribonucleoprotein, putative | chr1:2258814-2259584
REVERSE
Length = 129
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 90 PQRSIE------GWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALI 143
P RS+ G + VTG+ E DL++ F + G++ ++HL LD T +G+ I
Sbjct: 32 PTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 91
Query: 144 EYERAEEAKNAIENLNGSELLTQNIYVD 171
+ +A I +L+ S L + I V+
Sbjct: 92 SMKSVGDANRCIRSLDHSVLQGRVITVE 119
>AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA
RNA-BINDING PROTEIN 47A); RNA binding |
chr1:18360904-18363818 REVERSE
Length = 445
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 81 SLTTEGGPGPQRSIE-----GWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTG 135
+LT GG G S+ I V G+ + E+DL F ++GE+ ++ + + + G
Sbjct: 306 ALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCG 365
Query: 136 FVKGYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFS 175
FV ++ + A+ AI NLNG+ + + + W S
Sbjct: 366 FV------QFANRQSAEEAIGNLNGTVIGKNTVRLSWGRS 399
>AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357505-6359083 REVERSE
Length = 172
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 100 LVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLN 159
V G + E L+ F E+G++ N+ + + RT GY + + E+A++A+E +N
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 160 GSELLTQNIYVDW 172
G + I V +
Sbjct: 140 GKFFDGRFILVKF 152
>AT3G14100.1 | Symbols: | oligouridylate-binding protein, putative
| chr3:4673034-4675957 FORWARD
Length = 427
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
I V + E + L +F + + + D++TG +G+ + + ++A+ AI +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 159 NGSELLTQNIYVDWA 173
NG L ++ I +WA
Sbjct: 206 NGKWLSSRQIRCNWA 220
>AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633
FORWARD
Length = 816
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 101 VTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNG 160
V + EA + +L+ F +G+IK++ L + G GYA +E+ +EA NA + L
Sbjct: 706 VKNIAFEATKRELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEFVTKQEALNAKKALAS 764
Query: 161 SELLTQNIYVDWAFSSGPINESIRRKNA 188
+ +++ ++WA + E+IR+++A
Sbjct: 765 THFYGRHLVLEWANDDNSM-EAIRKRSA 791
>AT5G19030.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357572-6359026 REVERSE
Length = 126
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 100 LVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLN 159
V G + E L+ F E+G++ N+ + + RT GY + + E+A++A+E +N
Sbjct: 61 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
Query: 160 G 160
G
Sbjct: 121 G 121
>AT5G18810.1 | Symbols: SCL28 | SCL28 (SC35-like splicing factor
28); RNA binding | chr5:6268927-6271160 REVERSE
Length = 236
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 51/89 (57%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+L+ + +A+ +DL+++F +G +K+++L + TG +G+ ++Y AE+A A++ +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 159 NGSELLTQNIYVDWAFSSGPINESIRRKN 187
N + + I + +A + + +R N
Sbjct: 109 NHKVIGGREIAIVFAEENRKTPQEMRTTN 137
>AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 113 LQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYVDW 172
L+N F E G++ + DR +G KG+ + ++E + AI +LNG++L + I V
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 332
Query: 173 A 173
A
Sbjct: 333 A 333
>AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 113 LQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYVDW 172
L+N F E G++ + DR +G KG+ + ++E + AI +LNG++L + I V
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 332
Query: 173 A 173
A
Sbjct: 333 A 333
>AT1G53720.1 | Symbols: ATCYP59, CYP59 | ATCYP59/CYP59 (CYCLOPHILIN
59); RNA binding / nucleic acid binding /
peptidyl-prolyl cis-trans isomerase |
chr1:20060680-20063176 FORWARD
Length = 506
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 98 IILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIEN 157
++ V ++ +++DL F +G + + + D +TG YA IE+E E + A
Sbjct: 244 VLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFK 303
Query: 158 LNGSELLTQNIYVDWAFSSGPINESIRRKNARHPVMNLNIYFKTGQLVIGAPGALAGDID 217
++ + + + I+VD++ S + R+K+++ N G G+ +A D
Sbjct: 304 MDNALIDDRRIHVDFSQSVSKLWSQFRQKDSQKGKGN-------GCFKCGSTDHIAKD-- 354
Query: 218 VVCIG 222
C+G
Sbjct: 355 --CVG 357
>AT3G08000.1 | Symbols: | RNA-binding protein, putative |
chr3:2555040-2555835 REVERSE
Length = 143
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ + G+ E L++AF +GE+ + + D+ +G +G+ +++ +A +A + +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 159 NGSELLTQNIYVDWAF---SSGPI 179
+G LL + + + +A GP+
Sbjct: 103 DGKGLLGRPLRISFALERVRGGPV 126