Miyakogusa Predicted Gene

chr1.LjT43D18.20.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.LjT43D18.20.nd - phase: 0 
         (357 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76010.1 | Symbols:  | nucleic acid binding | chr1:28532166-2...   182   2e-46
AT1G20220.1 | Symbols:  | nucleic acid binding | chr1:7005081-70...   175   3e-44

>AT1G76010.1 | Symbols:  | nucleic acid binding |
           chr1:28532166-28534149 REVERSE
          Length = 350

 Score =  182 bits (463), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 106/131 (80%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATSLLQEKNAREIVLKAMGQAISKT 60
           MD+YQ+V KPK ++PI+ NEIRIT+QG  RNYITYA +LLQ+K + E+V KAMG+AI+KT
Sbjct: 1   MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query: 61  VAIAEILKKRIPQLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSASELNKS 120
           V I E++K+RIP LHQ+T+I S  ITD WEP EEGL+P+E TRHVSMI+ITLS  ELN S
Sbjct: 61  VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120

Query: 121 SPGYQAPYDVE 131
           S GYQ P  +E
Sbjct: 121 SVGYQCPIPIE 131


>AT1G20220.1 | Symbols:  | nucleic acid binding |
           chr1:7005081-7007276 REVERSE
          Length = 315

 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/137 (61%), Positives = 105/137 (76%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATSLLQEKNAREIVLKAMGQAISKT 60
           MD+YQ+VEKPK ++PI ENEIRIT+ G  RNYITYA +LLQE  + E++ KAMG+AI+K+
Sbjct: 1   MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query: 61  VAIAEILKKRIPQLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSASELNKS 120
           V I E++K+RIP LHQ T+I S  ITD WEP EEGL  +E TRHVSMI+ITLS  +LN S
Sbjct: 61  VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120

Query: 121 SPGYQAPYDVEQPKQLS 137
           S GYQ P  +E  K L+
Sbjct: 121 SVGYQCPIPIEMVKPLA 137