Miyakogusa Predicted Gene

chr1.LjT38A19.110.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.LjT38A19.110.nc - phase: 0 
         (142 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06760.1 | Symbols:  | late embryogenesis abundant group 1 do...    91   3e-19

>AT5G06760.1 | Symbols:  | late embryogenesis abundant group 1
           domain-containing protein / LEA group 1
           domain-containing protein | chr5:2089755-2090314 REVERSE
          Length = 158

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 66/113 (58%), Gaps = 4/113 (3%)

Query: 9   ETMKETAANIGASAKSGKEKTKATVQEKAEKVTAGDPVQKEMATQKKEAKVSQAELDKLA 68
           ++MKETA+NI ASAKSG +KTKAT++EKAEK+   DPVQK+MATQ KE K++QAE+ K  
Sbjct: 2   QSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKRE 61

Query: 69  AREHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPMGAHQTSALPGHGTG 121
            R+HN                                  G HQ SALPGHGTG
Sbjct: 62  TRQHNAAMKEAAGAGTGLGLGTATHSTTGQVGHGT----GTHQMSALPGHGTG 110