Miyakogusa Predicted Gene
- chr1.LjT35H06.190.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.LjT35H06.190.nc - phase: 0 /partial
(244 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G34320.1 | Symbols: | similar to unknown protein [Arabidopsi... 248 3e-66
AT5G08660.1 | Symbols: | similar to unknown protein [Arabidopsi... 224 3e-59
AT1G30755.1 | Symbols: | similar to unknown protein [Arabidopsi... 144 5e-35
AT3G23160.1 | Symbols: | similar to unknown protein [Arabidopsi... 52 5e-07
AT5G51670.1 | Symbols: | similar to unknown protein [Arabidopsi... 47 7e-06
>AT1G34320.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT5G08660.1); similar to Os05g0430300
[Oryza sativa (japonica cultivar-group)]
(GB:NP_001055623.1); similar to unknown protein [Oryza
sativa (japonica cultivar-group)] (GB:BAD82727.1);
contains InterPro domain Protein of unknown function
DUF668 (InterPro:IPR007700) | chr1:12520691-12524024
FORWARD
Length = 657
Score = 248 bits (632), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/256 (49%), Positives = 181/256 (70%), Gaps = 13/256 (5%)
Query: 1 VARSSAMPSNLRDTLYQSLPPNIKSALRSKLPSFRVVEELTVADIKEEMEKTLQWLVPIA 60
V+RSS MP++ RD LYQ LPP+IKSALRS++ SF+V EELTV IK EMEKTLQWLVP+A
Sbjct: 400 VSRSSTMPASTRDALYQGLPPSIKSALRSRIQSFQVKEELTVPQIKAEMEKTLQWLVPVA 459
Query: 61 TNTSKAHHGFGWVGEWANTGSEANRKAVQTGIMRIETFHHADKGKVEYYIVDLLLWLQRL 120
TNT+KAHHGFGWVGEWA++GSEAN++ I+RI+T HHADK K E YI+DL++WL L
Sbjct: 460 TNTTKAHHGFGWVGEWASSGSEANQRPAGQTILRIDTLHHADKEKTEAYILDLVVWLHHL 519
Query: 121 AIKIKAGSDAGKVKSPMKSSAGTTSEKTNKESTNALS-----PILTIDEQTMLQDVSKKA 175
+++A + G ++SP+KS + ++KT + S+ + + P+LT ++Q ML+DVSK+
Sbjct: 520 VTQVRATTGYG-LRSPVKSPIRSPNQKTIQLSSGSHNPSMGLPLLTTEDQEMLRDVSKRR 578
Query: 176 LIKGISKSMDFDSL-RSRLRENYRXXXXXXXX-----XXXXXXXXFN-RILSKLPVIDFD 228
GISKS +F+++ ++RL +++R F+ R S +P+IDFD
Sbjct: 579 KTPGISKSQEFETVAKARLCKHHRLSKSSSHSPMMGEMMKNKKDTFSTRRPSSVPIIDFD 638
Query: 229 IDKERALNVIDRLDVV 244
ID+ +AL+VIDR+D +
Sbjct: 639 IDRMKALDVIDRVDTI 654
>AT5G08660.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT1G34320.1); similar to unknown protein
[Oryza sativa (japonica cultivar-group)]
(GB:BAD82727.1); contains InterPro domain Protein of
unknown function DUF668 (InterPro:IPR007700) |
chr5:2814527-2817846 FORWARD
Length = 649
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/245 (48%), Positives = 156/245 (63%), Gaps = 4/245 (1%)
Query: 1 VARSSAMPSNLRDTLYQSLPPNIKSALRSKLPSFRVVEELTVADIKEEMEKTLQWLVPIA 60
VAR+S++ SN RD+LYQSLPP IK ALRSK+ SF V +EL+V IK+EME+TL WLVP+A
Sbjct: 392 VARASSITSNARDSLYQSLPPGIKLALRSKIKSFNVDKELSVTQIKDEMERTLHWLVPVA 451
Query: 61 TNTSKAHHGFGWVGEWANTGSEANRKAVQTGIMRIETFHHADKGKVEYYIVDLLLWLQRL 120
NT+KAHHGFGWVGEWANTG++ K I+RIET +HA K K E YI+ ++WLQ L
Sbjct: 452 GNTTKAHHGFGWVGEWANTGTDFTSKPSGGDILRIETLYHASKEKTEIYILGQIIWLQHL 511
Query: 121 AIKIKAGSDAGKVKSPMKSSAGTTSEKTNKESTNALSPILTIDEQTMLQDVSKKALIKGI 180
K K+ + G S +KS TT+++ E + PI+T +EQ MLQ+ SK+ +
Sbjct: 512 VTKAKSDARGGPRLSSIKSPLDTTNQQLISEPLSV--PIVTDEEQKMLQEASKRKRTPCV 569
Query: 181 SKSMDFDSLRSRLR--ENYRXXXXXXXXXXXXXXXXFNRILSKLPVIDFDIDKERALNVI 238
SKS DFDS SR R + R S P++DF IDKE+ L+VI
Sbjct: 570 SKSQDFDSEYSRARKCDPLSKSSEYFRGVRRSKSAAVKRYSSGFPLLDFAIDKEKVLDVI 629
Query: 239 DRLDV 243
DR+DV
Sbjct: 630 DRVDV 634
>AT1G30755.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT1G34320.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO60978.1); contains
InterPro domain Protein of unknown function DUF668
(InterPro:IPR007700) | chr1:10905973-10908755 REVERSE
Length = 615
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 1 VARSSAMPSNLRDTLYQSLPPNIKSALRSKLPSFRVVEELTVADIKEEMEKTLQWLVPIA 60
+R S++PSN+RDTLY +LP +K+ALR +L + EEL+V +IK EMEK+LQWLVP A
Sbjct: 375 ASRPSSLPSNVRDTLYNALPATVKTALRPRLQTLDQEEELSVPEIKAEMEKSLQWLVPFA 434
Query: 61 TNTSKAHHGFGWVGEWANT----GSEANRKAVQTGIMRIETFHHADKGKVEYYIVDLLLW 116
NT+KAH GFGWVGEWAN+ G + R++T HHADK V+ Y+++L++W
Sbjct: 435 ENTTKAHQGFGWVGEWANSRIEFGKGKGKGENNGNPTRLQTLHHADKPIVDSYVLELVVW 494
Query: 117 LQRLAIKIKAGSDAGKVKSPMKSSAGTTSEKTNKESTNALSPILTIDEQTMLQD 170
L RL K A VK + + +T + +LSP T Q L+D
Sbjct: 495 LHRLMKSSK--KRAHGVKLQETNHVSPPNNRTISNTQLSLSPDFTYKNQLSLED 546
>AT3G23160.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT5G04550.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO71334.1); contains
InterPro domain Protein of unknown function DUF668
(InterPro:IPR007700) | chr3:8260066-8261661 REVERSE
Length = 531
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 12 RDTLYQSLPPNIKS----ALRSKLPSFRVVEELTVADIKEEMEKTLQWLVPIATNTSKAH 67
RD LYQ LP ++K+ +LRS L + + + D KE ++ L WL P+ AH
Sbjct: 392 RDDLYQMLPTSLKTTLKASLRSYLKNISIYDAPLAHDWKETIDGILSWLAPL------AH 445
Query: 68 HGFGWVGEWANTGSEANRKAVQTGIMRIETFHHADKGKVEYYIVDLLLWLQRLA 121
+ W E + N+ +T ++ ++T + AD+ K E I LL+ L +
Sbjct: 446 NMIRWQSE--RNFEQQNQIVKRTNVLLLQTLYFADREKTEAAICKLLVGLNYIC 497
>AT5G51670.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT3G23160.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO49748.1); contains
InterPro domain Protein of unknown function DUF668
(InterPro:IPR007700) | chr5:21010786-21012322 FORWARD
Length = 474
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 12 RDTLYQSLPPNIKSALRSKLP--SFRVVEELTVADIKEEMEKTLQWLVPIATNTSKAHHG 69
RD LY LP +++S+LRS+L F + + K + + L+WL+P+A N +
Sbjct: 346 RDDLYSMLPASVRSSLRSRLKGVGFTATDGGLATEWKAALGRILRWLLPLAQNMIRWQSE 405
Query: 70 FGWVGEWANTGSEANRKAVQTGIMRIETFHHADKGKVEYYIVDLLLWL 117
+ + T + + Q +M ++T ADK K E I +LL+ L
Sbjct: 406 RSFEQQHMATATNS-----QNRVMLVQTLVFADKVKTEAAITELLVGL 448