Miyakogusa Predicted Gene
- chr1.LjT29N14.30.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.LjT29N14.30.nd + phase: 0
(613 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24620.1 | Symbols: PGI, PGI1 | PGI1 (CHLOROPLASTIC PHOSPHOGL... 1049 0.0
AT4G24620.2 | Symbols: PGI, PGI1 | PGI1 (CHLOROPLASTIC PHOSPHOGL... 967 0.0
AT5G42740.1 | Symbols: | glucose-6-phosphate isomerase, cytosol... 145 6e-35
>AT4G24620.1 | Symbols: PGI, PGI1 | PGI1 (CHLOROPLASTIC
PHOSPHOGLUCOSE ISOMERASE) | chr4:12708982-12712620
REVERSE
Length = 613
Score = 1049 bits (2713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/614 (81%), Positives = 557/614 (90%), Gaps = 2/614 (0%)
Query: 1 MASISGICSSSPTLNKYQNQTPSSTSFSIRRRTHLLPTFPTRTKLPLTRSVAREAPADLS 60
MAS+SG+ SSSP+L +N + + + R + P T LPLT S AR D+S
Sbjct: 1 MASLSGLYSSSPSLKPAKNHSFKALP-AQSRDSFSFPHTSKPTNLPLTLSSARSVARDIS 59
Query: 61 -AVTKHRLEKNPAALWQRYVDWLYQHKDLGLYIDVSRVGFTDEFLLEMEPRFQAAFRAMA 119
A +K L K+P ALW+RY+DW YQ K+LGLY+D+SRVGFTDEF+ EMEPRFQAAF+AM
Sbjct: 60 HADSKKELLKDPDALWKRYLDWFYQQKELGLYLDISRVGFTDEFVAEMEPRFQAAFKAME 119
Query: 120 ELEKGAIANPDEGRMVGHYWLRDSTRAPNSFLKAKIDDTLDAICRFADDIVSGKIKPPSS 179
+LEKG+IANPDEGRMVGHYWLR+S AP LK I++TLD+IC F+DDI+SGKIKPPSS
Sbjct: 120 DLEKGSIANPDEGRMVGHYWLRNSKLAPKPTLKTLIENTLDSICAFSDDIISGKIKPPSS 179
Query: 180 PEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGSELAS 239
PEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLG ELAS
Sbjct: 180 PEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELAS 239
Query: 240 TLVIVISKSGGTPETRNGLLEVQKAFREAGLSFPKQGVAITQENSLLDNTARIEGWLARF 299
TLV+VISKSGGTPETRNGLLEVQKAFREAGL+F KQGVAITQENSLLDNTARIEGWLARF
Sbjct: 240 TLVVVISKSGGTPETRNGLLEVQKAFREAGLNFAKQGVAITQENSLLDNTARIEGWLARF 299
Query: 300 PMFDWVGGRTSEMSAVGLLPAALQSIDIREMIAGASLMDEATRSTVIRNNPAALLALCWY 359
PM+DWVGGRTS MSAVGLLPAALQ I++REM+ GA+LMDEATR+T I+NNPAALLA+CWY
Sbjct: 300 PMYDWVGGRTSIMSAVGLLPAALQGINVREMLTGAALMDEATRTTSIKNNPAALLAMCWY 359
Query: 360 WATDGVGSKDMVILPYKDSMLLFSRYLQQLVMESLGKEFDLDGNRVNQGLSVYGNKGSTD 419
WA++GVGSKDMV+LPYKDS+LLFSRYLQQLVMESLGKEFDLDGN VNQGL+VYGNKGSTD
Sbjct: 360 WASNGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNTVNQGLTVYGNKGSTD 419
Query: 420 QHAYIQQLREGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDR 479
QHAYIQQLR+GVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYAN R
Sbjct: 420 QHAYIQQLRDGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANGR 479
Query: 480 ESITVTVQEVTPRSVGALIALYERAVGIYASIVNINAYHQPGVEAGKKAAGEVLALQKRV 539
ESI+VT+QEVTP SVGA+IALYERAVG+YASIVNINAYHQPGVEAGKKAA EVLALQKRV
Sbjct: 480 ESISVTIQEVTPTSVGAIIALYERAVGLYASIVNINAYHQPGVEAGKKAAAEVLALQKRV 539
Query: 540 LTVLNEASCKEPVEPLTLEEVADRCHAPEDIEIIYKIIAHMAANDRALIAEGSCGSPRSI 599
L+VLNEA+CK+PVEPLTLEE+ADRCHAPE+IE+IYKIIAHM+ANDR LIAEG+CGSPRSI
Sbjct: 540 LSVLNEATCKDPVEPLTLEEIADRCHAPEEIEMIYKIIAHMSANDRVLIAEGNCGSPRSI 599
Query: 600 KVFLGECNVDELYA 613
KV+LGECNVD+LYA
Sbjct: 600 KVYLGECNVDDLYA 613
>AT4G24620.2 | Symbols: PGI, PGI1 | PGI1 (CHLOROPLASTIC
PHOSPHOGLUCOSE ISOMERASE) | chr4:12709107-12712620
REVERSE
Length = 570
Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/570 (81%), Positives = 514/570 (90%), Gaps = 2/570 (0%)
Query: 1 MASISGICSSSPTLNKYQNQTPSSTSFSIRRRTHLLPTFPTRTKLPLTRSVAREAPADLS 60
MAS+SG+ SSSP+L +N + + + R + P T LPLT S AR D+S
Sbjct: 1 MASLSGLYSSSPSLKPAKNHSFKALP-AQSRDSFSFPHTSKPTNLPLTLSSARSVARDIS 59
Query: 61 -AVTKHRLEKNPAALWQRYVDWLYQHKDLGLYIDVSRVGFTDEFLLEMEPRFQAAFRAMA 119
A +K L K+P ALW+RY+DW YQ K+LGLY+D+SRVGFTDEF+ EMEPRFQAAF+AM
Sbjct: 60 HADSKKELLKDPDALWKRYLDWFYQQKELGLYLDISRVGFTDEFVAEMEPRFQAAFKAME 119
Query: 120 ELEKGAIANPDEGRMVGHYWLRDSTRAPNSFLKAKIDDTLDAICRFADDIVSGKIKPPSS 179
+LEKG+IANPDEGRMVGHYWLR+S AP LK I++TLD+IC F+DDI+SGKIKPPSS
Sbjct: 120 DLEKGSIANPDEGRMVGHYWLRNSKLAPKPTLKTLIENTLDSICAFSDDIISGKIKPPSS 179
Query: 180 PEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGSELAS 239
PEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLG ELAS
Sbjct: 180 PEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELAS 239
Query: 240 TLVIVISKSGGTPETRNGLLEVQKAFREAGLSFPKQGVAITQENSLLDNTARIEGWLARF 299
TLV+VISKSGGTPETRNGLLEVQKAFREAGL+F KQGVAITQENSLLDNTARIEGWLARF
Sbjct: 240 TLVVVISKSGGTPETRNGLLEVQKAFREAGLNFAKQGVAITQENSLLDNTARIEGWLARF 299
Query: 300 PMFDWVGGRTSEMSAVGLLPAALQSIDIREMIAGASLMDEATRSTVIRNNPAALLALCWY 359
PM+DWVGGRTS MSAVGLLPAALQ I++REM+ GA+LMDEATR+T I+NNPAALLA+CWY
Sbjct: 300 PMYDWVGGRTSIMSAVGLLPAALQGINVREMLTGAALMDEATRTTSIKNNPAALLAMCWY 359
Query: 360 WATDGVGSKDMVILPYKDSMLLFSRYLQQLVMESLGKEFDLDGNRVNQGLSVYGNKGSTD 419
WA++GVGSKDMV+LPYKDS+LLFSRYLQQLVMESLGKEFDLDGN VNQGL+VYGNKGSTD
Sbjct: 360 WASNGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNTVNQGLTVYGNKGSTD 419
Query: 420 QHAYIQQLREGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDR 479
QHAYIQQLR+GVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYAN R
Sbjct: 420 QHAYIQQLRDGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANGR 479
Query: 480 ESITVTVQEVTPRSVGALIALYERAVGIYASIVNINAYHQPGVEAGKKAAGEVLALQKRV 539
ESI+VT+QEVTP SVGA+IALYERAVG+YASIVNINAYHQPGVEAGKKAA EVLALQKRV
Sbjct: 480 ESISVTIQEVTPTSVGAIIALYERAVGLYASIVNINAYHQPGVEAGKKAAAEVLALQKRV 539
Query: 540 LTVLNEASCKEPVEPLTLEEVADRCHAPED 569
L+VLNEA+CK+PVEPLTLEE+ADRCHAPE+
Sbjct: 540 LSVLNEATCKDPVEPLTLEEIADRCHAPEE 569
>AT5G42740.1 | Symbols: | glucose-6-phosphate isomerase, cytosolic
(PGIC) | chr5:17153308-17157850 FORWARD
Length = 560
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 147/494 (29%), Positives = 233/494 (47%), Gaps = 68/494 (13%)
Query: 89 GLYIDVSRVGFTDEFLLEMEPRFQAA--FRAMAELEKGAIANPDEGRMVGHYWLRDSTRA 146
GL +D SR T E + ++ +A+ ++ + G N E R V H LR A
Sbjct: 48 GLLLDYSRQRATVETMDKLLNLAKASQLTEKISRMFNGEHINSTENRSVLHVALR----A 103
Query: 147 P-NSFLKA-------KIDDTLDAICRFADDIVSGK-IKPPSSPEGRFTQILSVGIGGSAL 197
P ++ +KA ++ + LD I F+D I SG + P ++++GIGGS L
Sbjct: 104 PKDAVIKADGMNVVPEVWNVLDKIKEFSDKIRSGSWVGATGKP---LKDVIAIGIGGSFL 160
Query: 198 GPQFVAEALAPDNPPL------KIRFIDNTDPAGIDHQIAQLGSELASTLVIVISKSGGT 251
GP FV AL D L ++RF+ N DP + I+ L E +TLV+V+SK+ T
Sbjct: 161 GPLFVHTALQTDPEALESAKGRQLRFLANIDPVDVARNISGLNPE--TTLVVVVSKTFTT 218
Query: 252 PETRNGLLEVQKAFREA--GLSFPKQGVAITQENSLLD------NTARIEGWLARFPMFD 303
ET +++ A + K VA++ +L++ N A F +D
Sbjct: 219 AETMLNARTLREWITAALGASAVAKHMVAVSTNLALVEKFGIDPNNA--------FAFWD 270
Query: 304 WVGGRTSEMSAVGLLPAALQS--IDIREMIAGASLMDEATRSTVIRNNPAALLALCWYWA 361
WVGGR S SAVG+LP +LQ + + + GAS +D+ +ST N LL L W
Sbjct: 271 WVGGRYSVCSAVGVLPLSLQYGFSMVEKFLKGASSIDQHFQSTPFEKNIPVLLGLLSVWN 330
Query: 362 TDGVGSKDMVILPYKDSMLLFSRYLQQLVMESLGKEFDLDGNRV--NQGLSVYGNKGSTD 419
+G ILPY ++ F+ ++QQ+ MES GK +DG + G +G G+
Sbjct: 331 VSFLGYPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGLPLPFETGEIDFGEPGTNG 390
Query: 420 QHAYIQQLREGVHNFFATFIEVLRDRPP---------GHDWELEPGVTCGDYL-FG---- 465
QH++ Q + +G FI +++ + P HD + D L +G
Sbjct: 391 QHSFYQLIHQG-RVIPCDFIGIVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAYGKTPE 449
Query: 466 MLQGTRSA-------LYANDRESITVTVQEVTPRSVGALIALYERAVGIYASIVNINAYH 518
LQ + ++ +R S+++ + E+T +VG L+A+YE V + + IN++
Sbjct: 450 QLQKENVSENLIPHKTFSGNRPSLSLLLPELTAYNVGQLLAIYEHRVAVQGFVWGINSFD 509
Query: 519 QPGVEAGKKAAGEV 532
Q GVE GK A +V
Sbjct: 510 QWGVELGKVLATQV 523