Miyakogusa Predicted Gene
- chr1.CM1956.620.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.CM1956.620.nc + phase: 0
(416 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74910.2 | Symbols: | ADP-glucose pyrophosphorylase family p... 704 0.0
AT1G74910.1 | Symbols: | ADP-glucose pyrophosphorylase family p... 704 0.0
AT1G74910.3 | Symbols: | ADP-glucose pyrophosphorylase family p... 654 0.0
AT2G04650.1 | Symbols: | ADP-glucose pyrophosphorylase family p... 633 0.0
AT2G39770.1 | Symbols: VTC1, SOZ1, EMB101, GMP1, CYT1 | CYT1 (CY... 191 7e-49
AT4G30570.1 | Symbols: | GDP-mannose pyrophosphorylase, putativ... 186 3e-47
AT3G55590.1 | Symbols: | GDP-mannose pyrophosphorylase, putativ... 181 8e-46
>AT1G74910.2 | Symbols: | ADP-glucose pyrophosphorylase family
protein | chr1:28139431-28142117 REVERSE
Length = 415
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/416 (79%), Positives = 377/416 (90%), Gaps = 1/416 (0%)
Query: 1 MGIAEDERVVAVIMVGGPTKGTRFRPLSLNIAKPLFPLAGQPMVHHPISACKRIPNLAQI 60
MG + +E+VVAVIMVGGPTKGTRFRPLSLNI KPLFP+AGQPMVHHPISACKRIPNLAQI
Sbjct: 1 MGSSMEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQI 60
Query: 61 YLIGFYEEREFALYVSSISTELKVPVRYLKEEKPHGSAGGLYNFRDLIMDDDPSHIFLLN 120
YL+GFYEEREFALYVS+IS ELKVPVRYL+E+KPHGSAGGLY+FR+LIM+D PSHIFLLN
Sbjct: 61 YLVGFYEEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLN 120
Query: 121 CDVCCSFPLLEMLDAHKKYGGMGTILVVKVSPESASQFGELVSDPVTNELLHYTEKPETF 180
CDVCCSFPL +ML+AH+ YGG+GT+LV+KVSPESASQFGELV+DPVTNELLHYTEKPETF
Sbjct: 121 CDVCCSFPLPKMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPVTNELLHYTEKPETF 180
Query: 181 VSDRINCGVYIFTPDVFTAIEGVSTQRKDRANLRRVSSFEAMQPDTRSLPSNYVRLDQDI 240
VSDRINCGVY+FTP++F AI VSTQRKDRA L+RVSSFEA+QP TR +P+++VRLDQDI
Sbjct: 181 VSDRINCGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDI 239
Query: 241 LTPLAGKKQLYIYETMDFWEQIKTPGMSIKCSSLYLSQFRYTAPHLLASGDGIKKSCIVG 300
L+PLAGKK+LY YETMDFWEQIK+PGMS++CS LYLSQFR T+P LLASGDG + + ++G
Sbjct: 240 LSPLAGKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIG 299
Query: 301 DVYIHPSAKVHPSAKIGPSVSISANARIGAGARLISCIVLDDVEIKENAVVIHAIVGWKS 360
DVYIHPSAKVHP+AKIGP+VSISANAR+G G RL+SCI+LDDVEI ENAVV +AIVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIVGWKS 359
Query: 361 SIGRWSRVQASGDYNAKLGVTILGXXXXXXXXXXXXNSIVLPHKTLNVGVQDEILL 416
SIGRWSRVQA G YN+KLGVTILG +SIVLP+KTLNV VQDEI+L
Sbjct: 360 SIGRWSRVQAEGVYNSKLGVTILGDSVAVEDEVVVTSSIVLPNKTLNVSVQDEIIL 415
>AT1G74910.1 | Symbols: | ADP-glucose pyrophosphorylase family
protein | chr1:28139431-28142117 REVERSE
Length = 415
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/416 (79%), Positives = 377/416 (90%), Gaps = 1/416 (0%)
Query: 1 MGIAEDERVVAVIMVGGPTKGTRFRPLSLNIAKPLFPLAGQPMVHHPISACKRIPNLAQI 60
MG + +E+VVAVIMVGGPTKGTRFRPLSLNI KPLFP+AGQPMVHHPISACKRIPNLAQI
Sbjct: 1 MGSSMEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQI 60
Query: 61 YLIGFYEEREFALYVSSISTELKVPVRYLKEEKPHGSAGGLYNFRDLIMDDDPSHIFLLN 120
YL+GFYEEREFALYVS+IS ELKVPVRYL+E+KPHGSAGGLY+FR+LIM+D PSHIFLLN
Sbjct: 61 YLVGFYEEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLN 120
Query: 121 CDVCCSFPLLEMLDAHKKYGGMGTILVVKVSPESASQFGELVSDPVTNELLHYTEKPETF 180
CDVCCSFPL +ML+AH+ YGG+GT+LV+KVSPESASQFGELV+DPVTNELLHYTEKPETF
Sbjct: 121 CDVCCSFPLPKMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPVTNELLHYTEKPETF 180
Query: 181 VSDRINCGVYIFTPDVFTAIEGVSTQRKDRANLRRVSSFEAMQPDTRSLPSNYVRLDQDI 240
VSDRINCGVY+FTP++F AI VSTQRKDRA L+RVSSFEA+QP TR +P+++VRLDQDI
Sbjct: 181 VSDRINCGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDI 239
Query: 241 LTPLAGKKQLYIYETMDFWEQIKTPGMSIKCSSLYLSQFRYTAPHLLASGDGIKKSCIVG 300
L+PLAGKK+LY YETMDFWEQIK+PGMS++CS LYLSQFR T+P LLASGDG + + ++G
Sbjct: 240 LSPLAGKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIG 299
Query: 301 DVYIHPSAKVHPSAKIGPSVSISANARIGAGARLISCIVLDDVEIKENAVVIHAIVGWKS 360
DVYIHPSAKVHP+AKIGP+VSISANAR+G G RL+SCI+LDDVEI ENAVV +AIVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIVGWKS 359
Query: 361 SIGRWSRVQASGDYNAKLGVTILGXXXXXXXXXXXXNSIVLPHKTLNVGVQDEILL 416
SIGRWSRVQA G YN+KLGVTILG +SIVLP+KTLNV VQDEI+L
Sbjct: 360 SIGRWSRVQAEGVYNSKLGVTILGDSVAVEDEVVVTSSIVLPNKTLNVSVQDEIIL 415
>AT1G74910.3 | Symbols: | ADP-glucose pyrophosphorylase family
protein | chr1:28139513-28142117 REVERSE
Length = 387
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/370 (81%), Positives = 346/370 (93%), Gaps = 1/370 (0%)
Query: 1 MGIAEDERVVAVIMVGGPTKGTRFRPLSLNIAKPLFPLAGQPMVHHPISACKRIPNLAQI 60
MG + +E+VVAVIMVGGPTKGTRFRPLSLNI KPLFP+AGQPMVHHPISACKRIPNLAQI
Sbjct: 1 MGSSMEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQI 60
Query: 61 YLIGFYEEREFALYVSSISTELKVPVRYLKEEKPHGSAGGLYNFRDLIMDDDPSHIFLLN 120
YL+GFYEEREFALYVS+IS ELKVPVRYL+E+KPHGSAGGLY+FR+LIM+D PSHIFLLN
Sbjct: 61 YLVGFYEEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLN 120
Query: 121 CDVCCSFPLLEMLDAHKKYGGMGTILVVKVSPESASQFGELVSDPVTNELLHYTEKPETF 180
CDVCCSFPL +ML+AH+ YGG+GT+LV+KVSPESASQFGELV+DPVTNELLHYTEKPETF
Sbjct: 121 CDVCCSFPLPKMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPVTNELLHYTEKPETF 180
Query: 181 VSDRINCGVYIFTPDVFTAIEGVSTQRKDRANLRRVSSFEAMQPDTRSLPSNYVRLDQDI 240
VSDRINCGVY+FTP++F AI VSTQRKDRA L+RVSSFEA+QP TR +P+++VRLDQDI
Sbjct: 181 VSDRINCGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDI 239
Query: 241 LTPLAGKKQLYIYETMDFWEQIKTPGMSIKCSSLYLSQFRYTAPHLLASGDGIKKSCIVG 300
L+PLAGKK+LY YETMDFWEQIK+PGMS++CS LYLSQFR T+P LLASGDG + + ++G
Sbjct: 240 LSPLAGKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIG 299
Query: 301 DVYIHPSAKVHPSAKIGPSVSISANARIGAGARLISCIVLDDVEIKENAVVIHAIVGWKS 360
DVYIHPSAKVHP+AKIGP+VSISANAR+G G RL+SCI+LDDVEI ENAVV +AIVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIVGWKS 359
Query: 361 SIGRWSRVQA 370
SIGRWSRVQA
Sbjct: 360 SIGRWSRVQA 369
>AT2G04650.1 | Symbols: | ADP-glucose pyrophosphorylase family
protein | chr2:1621983-1624483 REVERSE
Length = 406
Score = 633 bits (1632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/412 (72%), Positives = 349/412 (84%), Gaps = 9/412 (2%)
Query: 6 DERVVAVIMVGGPTKGTRFRPLSLNIAKPLFPLAGQPMVHHPISACKRIPNLAQIYLIGF 65
+E+VVAVIMVGGPTKGTRFRPLS N KPL PLAGQPM+HHPISACK+I NLAQI+LIGF
Sbjct: 3 EEKVVAVIMVGGPTKGTRFRPLSFNTPKPLIPLAGQPMIHHPISACKKISNLAQIFLIGF 62
Query: 66 YEEREFALYVSSISTELKVPVRYLKEEKPHGSAGGLYNFRDLIMDDDPSHIFLLNCDVCC 125
YEEREFALYVSSIS ELK+PVRYLKE+KPHGSAG LY FRD IM++ PSH+FLLNCDVCC
Sbjct: 63 YEEREFALYVSSISNELKIPVRYLKEDKPHGSAGALYYFRDRIMEEKPSHVFLLNCDVCC 122
Query: 126 SFPLLEMLDAHKKYGGMGTILVVKVSPESASQFGELVSDPVTNELLHYTEKPETFVSDRI 185
SFPL +LDAH++YGG+GT+LV+KVS E+ASQFGEL++DP T ELLHYTEKPETFVSD I
Sbjct: 123 SFPLQGILDAHRRYGGIGTMLVIKVSAEAASQFGELIADPDTKELLHYTEKPETFVSDLI 182
Query: 186 NCGVYIFTPDVFTAIEGVSTQRKDRANLRRVSSFEAMQPDTRSLPSNYVRLDQDILTPLA 245
NCGVY+FT D+F AIE V +Q +D ++ Q TRS+P+++VRLDQDIL+PLA
Sbjct: 183 NCGVYVFTSDIFNAIEEVYSQIRDTSS--------NYQSATRSVPADFVRLDQDILSPLA 234
Query: 246 GKKQLYIYETMDFWEQIKTPGMSIKCSSLYLSQFRYTAPHLLASGDGI-KKSCIVGDVYI 304
GKKQLY YE DFWEQIKTPG S+KCS+LYLSQFR T+PH+LASGDG +K I+GDVYI
Sbjct: 235 GKKQLYTYENKDFWEQIKTPGKSLKCSALYLSQFRETSPHILASGDGTNRKPTIIGDVYI 294
Query: 305 HPSAKVHPSAKIGPSVSISANARIGAGARLISCIVLDDVEIKENAVVIHAIVGWKSSIGR 364
HPS K+HP+AKIGP+VSISAN R+G G RLISCI+LDDVEIKENAVVI++I+GWKSSIGR
Sbjct: 295 HPSVKLHPTAKIGPNVSISANVRVGPGVRLISCIILDDVEIKENAVVINSIIGWKSSIGR 354
Query: 365 WSRVQASGDYNAKLGVTILGXXXXXXXXXXXXNSIVLPHKTLNVGVQDEILL 416
WSRVQASGDYN +LG+TILG SIVL +KTLNV VQD+I+L
Sbjct: 355 WSRVQASGDYNDRLGITILGEAVTVEDEVAVIGSIVLQNKTLNVSVQDDIIL 406
>AT2G39770.1 | Symbols: VTC1, SOZ1, EMB101, GMP1, CYT1 | CYT1
(CYTOKINESIS DEFECTIVE 1); nucleotidyltransferase |
chr2:16596479-16597819 FORWARD
Length = 361
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 193/397 (48%), Gaps = 48/397 (12%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIAKPLFPLAGQPMVHHPISACKRIPNLAQIYLIGFYEERE 70
A+I+VGG GTR RPL+L+ KPL A +PM+ H I A K + + ++ L Y+
Sbjct: 3 ALILVGG--FGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAV-GVDEVVLAINYQPEV 59
Query: 71 FALYVSSISTELKVPVRYLKEEKPHGSAGGLYNFRDLIMDDDPSHIFLLNCDVCCSFPLL 130
++ T+L++ + +E +P G+AG L RD ++D F+LN DV +PL
Sbjct: 60 MLNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDGSGEPFFVLNSDVISEYPLK 119
Query: 131 EMLDAHKKYGGMGTILVVKVSPESASQFGELVSDPVTNELLHYTEKPETFVSDRINCGVY 190
EML+ HK +GG +I+V KV + S++G +V + T + + EKP+ +V ++IN G+Y
Sbjct: 120 EMLEFHKSHGGEASIMVTKV--DEPSKYGVVVMEESTGRVEKFVEKPKLYVGNKINAGIY 177
Query: 191 IFTPDVFTAIEGVSTQRKDRANLRRVSSFEAMQPDTRSLPSNYVRLDQDILTPLAGKKQL 250
+ P V D+ LR S ++++ +A + L
Sbjct: 178 LLNPSVL-----------DKIELRPTS------------------IEKETFPKIAAAQGL 208
Query: 251 YIYETMDFWEQIKTPGMSIKCSSLYLSQFRYTAPHLLASGDGIKKSCIVGDVYIHPSAKV 310
Y FW I P I LYL R +P L SG IVG+V + +A +
Sbjct: 209 YAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSPAKLTSG-----PHIVGNVLVDETATI 263
Query: 311 HPSAKIGPSVSISANARIGAGARLISCIVLDDVEIKENAVVIHAIVGWKSSIGRWSRVQA 370
IGP V+I + +G RL C V+ V IK++A + +I+GW S++G+W+R++
Sbjct: 264 GEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARIE- 322
Query: 371 SGDYNAKLGVTILGXXXXXXXXXXXXNSIVLPHKTLN 407
+TILG +VLPHK +
Sbjct: 323 --------NMTILGEDVHVSDEIYSNGGVVLPHKEIK 351
>AT4G30570.1 | Symbols: | GDP-mannose pyrophosphorylase, putative |
chr4:14930712-14931957 REVERSE
Length = 331
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 185/375 (49%), Gaps = 47/375 (12%)
Query: 33 KPLFPLAGQPMVHHPISACKRIPNLAQIYLIGFYEEREFAL-YVSSISTELKVPVRYLKE 91
KPL +PM+ H I A K + ++ L +++ E L +V +L++ + + +E
Sbjct: 3 KPLVDFGNKPMILHQIEALKG-AGVTEVVLAINHQQPEVMLNFVKEYEKKLEIKITFSQE 61
Query: 92 EKPHGSAGGLYNFRDLIMDDDPSHIFLLNCDVCCSFPLLEMLDAHKKYGGMGTILVVKVS 151
+P G+AG L RD ++D+ F+LN DV C +PLLEM++ HK +I+V +V
Sbjct: 62 TEPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLLEMIEFHKTNRAEASIMVTEV- 120
Query: 152 PESASQFGELVSDPVTNELLHYTEKPETFVSDRINCGVYIFTPDVFTAIEGVSTQRKDRA 211
+ S++G +V++ T + + EKP+ FV ++IN G+Y+ +P V DR
Sbjct: 121 -DDPSKYGVVVTEEGTARVESFVEKPKHFVGNKINAGIYLLSPSVL-----------DRI 168
Query: 212 NLRRVSSFEAMQPDTRSLPSNYVRLDQDILTPLAGKKQLYIYETMDFWEQIKTPGMSIKC 271
LRR S ++++I +A +K+LY FW I P I
Sbjct: 169 ELRRTS------------------IEKEIFPKIASEKKLYAMVLPGFWMDIGQPKDYITG 210
Query: 272 SSLYLSQFRYTAPHLLASGDGIKKSCIVGDVYIHPSAKVHPSAKIGPSVSISANARIGAG 331
+YL+ R P LA+GD I+G+V +H SA + IGP V I I +G
Sbjct: 211 QRMYLNSLREKTPQELATGDN-----IIGNVLVHESAVIGEGCLIGPDVVIGPGCVIDSG 265
Query: 332 ARLISCIVLDDVEIKENAVVIHAIVGWKSSIGRWSRVQASGDYNAKLGVTILGXXXXXXX 391
RL C V+ V IKE+A + ++IVGW S++GRW+RV +T+LG
Sbjct: 266 VRLFGCTVMRGVWIKEHACISNSIVGWDSTVGRWARV---------FNITVLGKDVNVAD 316
Query: 392 XXXXXNSIVLPHKTL 406
+ +V+ + L
Sbjct: 317 AEVYNSGVVIEEQGL 331
>AT3G55590.1 | Symbols: | GDP-mannose pyrophosphorylase, putative |
chr3:20628458-20629860 FORWARD
Length = 364
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 183/362 (50%), Gaps = 42/362 (11%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIAKPLFPLAGQPMVHHPISACKRIPNLAQIYLIGFYEERE 70
A+I+VGG GTR RPL+L++ KPL A +PM+ H I A K I + ++ L YE +
Sbjct: 3 ALILVGG--FGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAI-GVDEVVLAINYEPEQ 59
Query: 71 FAL---YVSSISTELKVPVRYLKEEKPHGSAGGLYNFRDLIMDDDPSHIFLLNCDVCCSF 127
+ + + + L + + +E +P G+AG L RD ++D F+LN DV +
Sbjct: 60 LLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDY 119
Query: 128 PLLEMLDAHKKYGGMGTILVVKVSPESASQFGELVSDPVTNELLHYTEKPETFVSDRINC 187
PL EM+ H +GG +I+V KV + S++G +V + T + + EKP+ FV ++IN
Sbjct: 120 PLEEMIAFHNAHGGEASIMVTKV--DEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINA 177
Query: 188 GVYIFTPDVFTAIEGVSTQRKDRANLRRVSSFEAMQPDTRSLPSNYVRLDQDILTPLAGK 247
G+Y+ P V DR LR S ++++I +A
Sbjct: 178 GIYLLNPSVL-----------DRIELRPTS------------------IEKEIFPQIAEA 208
Query: 248 KQLYIYETMDFWEQIKTPGMSIKCSSLYLSQFRYTAPHLLASGDGIKKSCIVGDVYIHPS 307
++LY FW I P I LYL R +P LA+G I+G+V + +
Sbjct: 209 EKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATG-----PHILGNVLVDET 263
Query: 308 AKVHPSAKIGPSVSISANARIGAGARLISCIVLDDVEIKENAVVIHAIVGWKSSIGRWSR 367
A++ IGP+V+I + +G RL C V+ V +K A + +I+GW S++G+W+R
Sbjct: 264 AEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWAR 323
Query: 368 VQ 369
V+
Sbjct: 324 VE 325