Miyakogusa Predicted Gene

chr1.CM1409.180.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM1409.180.nd + phase: 2 /partial
         (693 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40980.1 | Symbols:  | ATP binding / protein kinase | chr2:17...   772   0.0  

>AT2G40980.1 | Symbols:  | ATP binding / protein kinase |
           chr2:17109168-17111521 FORWARD
          Length = 617

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/485 (73%), Positives = 418/485 (86%), Gaps = 2/485 (0%)

Query: 206 EALFYAIRVXXXXXXXXXXXXXDPSTVFILIVDSQYGGVVKVEGDVNMLNFDVNNVYECA 265
           EALFYA+R+               + VFIL+VDSQYGGVVKVEGDVN L+FD+NNVYECA
Sbjct: 131 EALFYAVRILIARSVSRLDFSQSSNCVFILLVDSQYGGVVKVEGDVNKLDFDLNNVYECA 190

Query: 266 AEWVKNHSRISVSPMYRIWNKLGNANWGDIGSLQILFATFHCIMQYAGMPKNSIEDLAAD 325
           A+W+K HS+I+VSP+ RIWNKLGNANWGDIG+LQ++FAT+H IMQY G P++SIEDLAAD
Sbjct: 191 ADWIKKHSKIAVSPVDRIWNKLGNANWGDIGALQVVFATYHSIMQYFGAPRHSIEDLAAD 250

Query: 326 HSSRLQARRIERHLGDATVNENGLFRYQQRSVSPEIVEVQDDPVKIDSKESMKLEEGSML 385
           HSSRL +RR ER LGD +++ENG+FR+QQ ++SPEIVEVQ++  KI+ + SMKLE GS+L
Sbjct: 251 HSSRLHSRRQERQLGDTSLSENGMFRFQQSTMSPEIVEVQEESTKIEPEPSMKLEVGSVL 310

Query: 386 WLEDSDWQKGYQIKEVINTGEFTYYIASNVEDPGKNLFLYVGSHPSQLEPAWEDMNLWYQ 445
           WLE+S++QKGYQI E++  G   Y+IAS V+D GK++FLYVGS PSQLEPAWEDMNLWYQ
Sbjct: 311 WLEESNYQKGYQINEILTNGTLPYHIASPVDDAGKSVFLYVGSPPSQLEPAWEDMNLWYQ 370

Query: 446 VQRQTKVLTIMKQKGLSCKYLPQLSASGRIIHPGHCRRPSSGGNCDHPWCGTPVLVTSPV 505
           VQRQTK+L+IMKQ+GLS KYLPQL  SGRIIHPG C++PSSGG CDHPWCGTP+LVT+PV
Sbjct: 371 VQRQTKILSIMKQRGLSSKYLPQLHGSGRIIHPGQCQKPSSGGRCDHPWCGTPILVTTPV 430

Query: 506 GETVAEMVRTGQFGPDEAIKCCHDCXXXXXXXXXXGIRHGDIRPENVICVKSGVRHPYFV 565
           GETVA++V  G+FGP+EAI+CCHDC          GIRHGDIRPENV+ V SGVRHPYFV
Sbjct: 431 GETVADLVNEGRFGPEEAIRCCHDCLSALSSSSSAGIRHGDIRPENVVYVTSGVRHPYFV 490

Query: 566 LIGWGHAILEDRDRPAMNLHFSSTYALQEGKLCSASDAESLVYMLYFSCGGGFPDLDSVE 625
           LIGWGHA+LEDRDRPAMNLHFSSTYALQEGKLC+ASDAESL+YMLYF C G FP+LDSVE
Sbjct: 491 LIGWGHAVLEDRDRPAMNLHFSSTYALQEGKLCAASDAESLIYMLYF-CSGDFPELDSVE 549

Query: 626 GALQWRETSWSRRSIQQKLGDIFTVLKAFADYVDSLCGTPYPMDYEIWLRRLRRNIHEED 685
           GALQWRETSWS+R IQQKLGDI TVLKAF+DYVDSLCGTPYP+DY+IWLRRL+RN+  ED
Sbjct: 550 GALQWRETSWSKRLIQQKLGDISTVLKAFSDYVDSLCGTPYPLDYDIWLRRLKRNL-SED 608

Query: 686 HGKEI 690
           HGKEI
Sbjct: 609 HGKEI 613



 Score =  142 bits (359), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 80/99 (80%)

Query: 27  EFFYKFVDSDNLTAKLVDWFESVTEKSELKQPAFDVPFELIELQKFDYALEGISFQQLTR 86
           +F  +F DS + T KL DWF S  E S  + P FDVPFEL+ELQKFDYALEGISFQQLTR
Sbjct: 33  DFLSRFTDSAHFTEKLEDWFASTLENSASEGPVFDVPFELVELQKFDYALEGISFQQLTR 92

Query: 87  MPNAVHASSSDAVEATACLAIEDFLHASIKGLWEAFWNQ 125
           MP+ V+ASSS+A+EA A LAIEDFLHA++K LWEAFW++
Sbjct: 93  MPSPVYASSSNALEAKAYLAIEDFLHATVKSLWEAFWSE 131