Miyakogusa Predicted Gene

chr1.CM0955.30.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0955.30.nd + phase: 1 /partial
         (297 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G45750.1 | Symbols:  | similar to unknown protein [Arabidopsi...   112   2e-25
AT3G45760.1 | Symbols:  | similar to unknown protein [Arabidopsi...    58   8e-09

>AT3G45750.1 | Symbols:  | similar to unknown protein [Arabidopsis
           thaliana] (TAIR:AT3G45760.1); similar to hypothetical
           protein OsJ_027139 [Oryza sativa (japonica
           cultivar-group)] (GB:EAZ43656.1); similar to
           Os08g0559900 [Oryza sativa (japonica cultivar-group)]
           (GB:NP_001062505.1); contains domain SSF81631
           (SSF81631); contains domain PTHR12271:SF13
           (PTHR12271:SF13); contains domain PTHR12271 (PTHR12271);
           contains domain SSF81301 (SSF81301) |
           chr3:16804840-16808365 REVERSE
          Length = 682

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 1/127 (0%)

Query: 1   GADLVSVTKNVETYFNYGKQNEESLTKLFITLLVKLASVESLWQQGICASVYEGSWILKT 60
           G D  +V K  + + N+G++N+ESL +LF T  +KL SVE LW+QG+C SV  G WI K 
Sbjct: 250 GMDPPNVEKRAQKFLNWGQRNQESLGRLFATFFIKLQSVEFLWRQGLCVSVLNGLWISKK 309

Query: 61  WNRP-YSMRQIEDFMDRSQNVARAVGAAKAEIIYRCIHKSLSYLSQFLNDQIQGIELMDL 119
           W +       +EDF + SQNVAR V  A A+ IY  I++++  + +FLND++ G +L   
Sbjct: 310 WKKVGVGSISVEDFTNISQNVARRVNGAGAKKIYSSINRTVEDIFEFLNDKVAGTDLRHR 369

Query: 120 LFGTHTV 126
           LFG  +V
Sbjct: 370 LFGKGSV 376


>AT3G45760.1 | Symbols:  | similar to unknown protein [Arabidopsis
           thaliana] (TAIR:AT3G45750.1); similar to hypothetical
           protein OsJ_027139 [Oryza sativa (japonica
           cultivar-group)] (GB:EAZ43656.1); similar to
           Os08g0559900 [Oryza sativa (japonica cultivar-group)]
           (GB:NP_001062505.1); contains domain PTHR12271:SF1
           (PTHR12271:SF1); contains domain PTHR12271 (PTHR12271);
           contains domain SSF81301 (SSF81301) |
           chr3:16812981-16815744 REVERSE
          Length = 442

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 34/129 (26%)

Query: 1   GADLVSVTKNVETYFNYGKQNEESLTKLFITLLVKLASVESLWQQGICASVYEGSWILKT 60
           G D   V K  + + N+G++N+ESL +LF T  +K                         
Sbjct: 218 GIDPPIVEKRTQKFLNWGQRNQESLGRLFATFFIK------------------------- 252

Query: 61  WNRPYSMRQIEDFMDRSQNVARAVGAAKAEIIYRCIHKSLSYLSQFLNDQIQGIELMDLL 120
                    +EDF D ++N AR      AE IY  I++++  + +FLN ++ G  L   L
Sbjct: 253 ---------VEDFTDVARNFARVFSDYGAEKIYSSINRTVDDILEFLNGKVAGEHLTQKL 303

Query: 121 FGTHTVSTP 129
           F   TV  P
Sbjct: 304 FSQQTVVEP 312