Miyakogusa Predicted Gene

chr1.CM0760.80.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0760.80.nc - phase: 0 
         (604 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14520.1 | Symbols:  | pescadillo-related | chr5:4680792-4684...   724   0.0  

>AT5G14520.1 | Symbols:  | pescadillo-related | chr5:4680792-4684333
           REVERSE
          Length = 590

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/603 (61%), Positives = 459/603 (76%), Gaps = 16/603 (2%)

Query: 1   MVKHYRPAGKKKEGNAAKFVTRSQALKQLQITLPLFRKLCILKGVTPREPKKKFKGNHHT 60
           M KHYRP GKKKEGNAA+++TRSQALK LQ+ L LFR+LCI+KG+ PREPKKK KGNHHT
Sbjct: 1   MPKHYRPTGKKKEGNAARYMTRSQALKHLQVNLNLFRRLCIVKGIFPREPKKKIKGNHHT 60

Query: 61  YYHVKDVSFLHHEPLLEIHRAIRVHEKKIKKAEAKQNIERANRLREKTPKPKVDRIIRQR 120
           YYHVKD++FL HEPLLE  R I+ ++KK+KKA+AK+N E A  L  + P  K+DR+IR+R
Sbjct: 61  YYHVKDIAFLMHEPLLEKFREIKTYQKKVKKAKAKKNEELARLLLTRQPTYKLDRLIRER 120

Query: 121 YPRFVDALGELDDCLTMVHLFAALPASERTKIEVERVHKCRRLAHEWQAFISRKHKLRKT 180
           YP F+DAL +LDDCLTMVHLFA LPAS+R  +EV+RVH CRRL HEWQA+ISR H LRK 
Sbjct: 121 YPTFIDALRDLDDCLTMVHLFAVLPASDRENLEVKRVHNCRRLTHEWQAYISRSHALRKV 180

Query: 181 FVSVKGIYYQAEVEGQTVTWLSPHSLQQVVPDDVDIVTMLSFLQLYEPLLSFVNFRLYHS 240
           FVSVKGIYYQAE+EGQ +TWL+PH++QQV  +DVD   +L+FL+ YE LL+F+NF+LYHS
Sbjct: 181 FVSVKGIYYQAEIEGQKITWLTPHAIQQVFTNDVDFGVLLTFLEFYETLLAFINFKLYHS 240

Query: 241 INLKYPPILDPQLEALAADLYALSRYANADPKPSVLNSEASLLAGSEQVESKQNRAVTEK 300
           +N+KYPPILD +LEALAADLYALSRY +A  +          +A   +V++  +    ++
Sbjct: 241 LNVKYPPILDSRLEALAADLYALSRYIDASSRG---------MAVEPKVDASFSSQSNDR 291

Query: 301 EHSELRLAQLQHQLPSNEPGALMQLVDKVAGEEVEEDHDTRECKNLFKNMKFFLSREVPR 360
           E SELRLAQLQHQLPS+EPGALM LV     +EVEED +TR CK+LFK++KFFLSREVPR
Sbjct: 292 EESELRLAQLQHQLPSSEPGALMHLVAD-NNKEVEEDEETRVCKSLFKDLKFFLSREVPR 350

Query: 361 ESLLFVIPAFGGTVSWEGKGAPFGESDDSITHQIVDREAQGHRFLSREYVQPQWVYDSVN 420
           ESL  VI AFGG VSWEG+GAPF E D+SITH I+D+ + GH +LSR YVQPQW+YD VN
Sbjct: 351 ESLQLVITAFGGMVSWEGEGAPFKEDDESITHHIIDKPSAGHLYLSRVYVQPQWIYDCVN 410

Query: 421 ARVILPTEKYMVGRIPPPHLSPFVNYDEGAYVPDYAKIIKQLQAAAEKEVLPLPGIGKED 480
           AR+ILPTEKY+VGRIPPPHLSPFV+ +   YVPDYA+ IK+LQAAA  EVLPLPG+GKED
Sbjct: 411 ARIILPTEKYLVGRIPPPHLSPFVDNEAEGYVPDYAETIKRLQAAARNEVLPLPGVGKED 470

Query: 481 LEDPQNLLAEGMIDRVEANEAAKRKQKMMILEQQYHDDLKKELKGVTHTSAGSDVEKETS 540
           LEDPQNLL  G++ R E  EAAK K+KM   E+QYH++LK E+ G     A    E E  
Sbjct: 471 LEDPQNLLYAGVMSRAEEAEAAKNKKKMAAQEKQYHEELKMEINGSKDVVAPVLAEGE-- 528

Query: 541 GGEQTVEPATKVQENVDDTADXXXXXXXXXXXXXXEAMQISNKRKQDQTALLKQRRKRLD 600
            GE++V  A ++ +   + AD              +AM+IS  RK+    +++QR+KRL+
Sbjct: 529 -GEESVPDAMQIAQ---EDADMPKVLMSRKKRKLYDAMKISQSRKRSGVEIIEQRKKRLN 584

Query: 601 EAQ 603
           + Q
Sbjct: 585 DTQ 587