Miyakogusa Predicted Gene

chr1.CM0600.110.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0600.110.nd - phase: 0 
         (280 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08640.1 | Symbols:  | heat shock protein binding | chr1:2748...   340   6e-94

>AT1G08640.1 | Symbols:  | heat shock protein binding |
           chr1:2748717-2751212 REVERSE
          Length = 294

 Score =  340 bits (872), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 172/283 (60%), Positives = 207/283 (73%), Gaps = 4/283 (1%)

Query: 1   MALSISTTL--HYPKFSFSRNNFR-PKLPTSLRFPTEKPWSGVKITCXXXXXXXXXXXXX 57
           MA S S  L  H+P+ S  RN+ R PK P+ +R P  K      +               
Sbjct: 13  MAFSTSNALRYHHPQISL-RNSLRAPKSPSFVRLPLGKVLQSRIVIRAASSAAGNPQSDA 71

Query: 58  XXXXYEVLGVSPIEKFDTIKATYSRKRKEAEMMGDEETASRLEKAYDKIMMSQLSNRKKG 117
               YEVLGV+PIE FD IK TY RK K+A+  GDE TA+ LEKAYDK+M +QL NRKKG
Sbjct: 72  DFNPYEVLGVNPIEGFDKIKQTYGRKLKDAQRSGDEATAALLEKAYDKLMYAQLMNRKKG 131

Query: 118 VTFGSFKVSKDIKYADKQPIIPWGPRFAKSSKNDIRINLAISAIFTAWVYVKRIAEYKPL 177
           VTFGSFKVSKDIKYADKQPIIPWGPRF++SSKND+ INLAIS +F+AW+ +KR  EYKPL
Sbjct: 132 VTFGSFKVSKDIKYADKQPIIPWGPRFSRSSKNDMLINLAISVVFSAWIAIKRNVEYKPL 191

Query: 178 QFLAFAFVYRLFEKLKSFESPVTSTYNEEGEDTGEGLRMGKRLLRSLALVFGCIAFSSLG 237
           QF++F FVYR+FEKLKSFE+P +  YNEEGE++G GLRMGKRLLRSL+LVFG I  +SL 
Sbjct: 192 QFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILLASLA 251

Query: 238 YTFILNIIEFAGGFIPATLYNSQELIITTSSAVMLHILASYYR 280
           YT  LN IE+ G  IP  LYN+QELI+T SSA ML+++AS+YR
Sbjct: 252 YTGFLNGIEYMGYSIPMVLYNNQELIVTASSAFMLYVIASFYR 294