Miyakogusa Predicted Gene

chr1.CM0496.70.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0496.70.nd - phase: 0 /partial
         (909 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53440.1 | Symbols:  | similar to unknown protein [Arabidopsi...   282   9e-76

>AT5G53440.1 | Symbols:  | similar to unknown protein [Arabidopsis
           thaliana] (TAIR:AT1G56660.1); similar to hypothetical
           protein [Vitis vinifera] (GB:CAN70975.1) |
           chr5:21700905-21705196 REVERSE
          Length = 1181

 Score =  282 bits (721), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 179/421 (42%), Positives = 244/421 (57%), Gaps = 34/421 (8%)

Query: 486 SGISDRGPKYKSMDKPIKIDECPAGDLSTERSSSAKASPMGLIERSPSSTSIERRYVNKS 545
           SG S+RG + K  +K   +++   G+   ERS +AKASP  ++ERSPSSTS+ERRY N+ 
Sbjct: 487 SGGSERGTRQKVSEKTANMEDGVLGEFPAERSFAAKASPRPMVERSPSSTSLERRYNNRG 546

Query: 546 GVKRNLEIDESGRRSSNDGRDFS-TSDDRHGRELTLEKLDEPSQADSSFYSRTNQSNPPV 604
           G +R++E++E+G R  N+ RD+S T ++RH        +DE SQA+ SF ++ NQ+N   
Sbjct: 547 GARRSIEVEETGHR--NNARDYSATEEERH-------LVDETSQAELSFNNKANQNNSSF 597

Query: 605 IPTPPGFRTALDRPFTGSMEDDVRDNSNTRYRRSSEHGFGRMHG---GNSWRAVPNWTSX 661
            P P   R+ +  P  G  E+D R N+  RY+R    G   M G    N WR VP+W S 
Sbjct: 598 PPRPES-RSGVSSPRVGPREEDNRVNTGGRYKRG---GVDAMMGRGQSNMWRGVPSWPSP 653

Query: 662 XXXXXXXXXXXXXXXXXQAMMPQFASQPLFGIRAPMEVNHAGIPYHIADADRFPGHLRPL 721
                            Q MMPQF S  LFG+R  ME+NH GI YHI DA+RF GH+RPL
Sbjct: 654 LSNGYFPFQHVPPHGAFQTMMPQFPSPALFGVRPSMEMNHQGISYHIPDAERFSGHMRPL 713

Query: 722 GWPNMMDGTGPAHLHGW--DNSNGVFRDDTQMYGGSDWDRNRHSTNSHGWESGSETWKEQ 779
           GW NMMD +G +H+HG+  D SN V RD++ MYGGS+WD+NR   N  GWESG++ WK +
Sbjct: 714 GWQNMMDSSGASHMHGFFGDMSNSV-RDESNMYGGSEWDQNRR-MNGRGWESGADEWKSR 771

Query: 780 NSDSKKDLPSPACKDESVPAVVDN-GLTDQTIRMSQDEHNRDEFHDKSPETKLTSVNSPE 838
           N D+  ++ S + KD++   V D+  L  QT   S  ++NR     KS E   +++ SP 
Sbjct: 772 NGDASMEVSSMSVKDDNSAQVADDESLGGQT---SHSDNNR----AKSVEAG-SNLTSPA 823

Query: 839 KVPLNSSPTAALEKVPD--TSTPSDNTTLLSRFYLSKLDISVDLVLPELYDQCMYTLNIG 896
           K    SSP    E   D   S   DNT    R YLSKLD+S  L   EL  +C+ +L IG
Sbjct: 824 KELHASSPKTMEEVAADDPVSETIDNTERYCRHYLSKLDVSAGLADAELR-KCI-SLLIG 881

Query: 897 K 897
           +
Sbjct: 882 E 882



 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 99/253 (39%), Gaps = 22/253 (8%)

Query: 40  VKASKDSGSGEKRRLDSKDAAAAAHGNGEYSDEYASSS------KXXXXXXXXXXXXXXX 93
           V+ SK+SGSG+KR+ +  D+      NGEY +EY SSS      K               
Sbjct: 41  VRVSKESGSGDKRK-EYYDSV-----NGEYYEEYTSSSSKRRKGKSGESGSDRWNGKDDD 94

Query: 94  XXXXSKKSKTVGDSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVAEKEKERKLKD 153
               SKK+K V   K                               + V +KEK+RK K+
Sbjct: 95  KGESSKKTK-VSSEKSRKRDEGDGEETKKSSGKSDGKHRESSRRESKDV-DKEKDRKYKE 152

Query: 154 GRSEESVEIDDQDQRLSKQVFENNDSKKIDELRSPELDNQLEXXXXXXXXXXXXXXXXXX 213
           G+S++  + DD  +  SK   +  +SK  D  RSP  +N  E                  
Sbjct: 153 GKSDKFYDGDDHHK--SKAGSDKTESKAQDHARSPGTENYTEKRSRRKRDDHGTGDKHHD 210

Query: 214 XVGDGYDRRLSSXXXXXXXXXXXXXXXXXXXXXXXXXEEMDRENKHRHDKQRDERPAKDH 273
              D  DR L+S                         E++    K + DKQRD+RP K+H
Sbjct: 211 NSDDVGDRVLTSGDDYIKDGKHKGEKSRDKYREDKEEEDI----KQKGDKQRDDRPTKEH 266

Query: 274 TSIRSDDKYTREE 286
             +RSD+K TR+E
Sbjct: 267 --LRSDEKLTRDE 277