Miyakogusa Predicted Gene
- chr1.CM0433.310.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.CM0433.310.nd + phase: 2 /pseudo/partial
(475 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10950.1 | Symbols: | cylicin-related | chr5:3459558-3461633... 100 3e-21
AT4G31880.1 | Symbols: | binding | chr4:15419441-15423945 REVERSE 98 9e-21
AT1G15940.1 | Symbols: | binding | chr1:5473666-5478044 FORWARD 89 6e-18
AT1G80810.2 | Symbols: | binding | chr1:30370467-30373790 FORWARD 86 6e-17
AT1G80810.1 | Symbols: | binding | chr1:30370467-30373790 FORWARD 86 7e-17
AT5G47690.3 | Symbols: | binding | chr5:19335125-19344240 FORWARD 80 2e-15
AT5G47690.2 | Symbols: | binding | chr5:19335125-19344240 FORWARD 80 2e-15
AT5G47690.1 | Symbols: | binding | chr5:19335125-19344240 FORWARD 80 2e-15
AT4G32970.1 | Symbols: | similar to unknown protein [Arabidopsi... 67 3e-11
AT4G02070.1 | Symbols: MSH6-1, ATMSH6, MSH6 | MSH6 (MUTS HOMOLOG... 58 1e-08
AT1G77600.1 | Symbols: | binding | chr1:29157784-29167856 REVERSE 54 3e-07
AT4G32620.1 | Symbols: | nucleic acid binding | chr4:15731974-1... 52 7e-07
AT1G05830.2 | Symbols: | trithorax protein, putative / PHD fing... 44 2e-04
AT1G05830.1 | Symbols: | trithorax protein, putative / PHD fing... 44 2e-04
>AT5G10950.1 | Symbols: | cylicin-related | chr5:3459558-3461633
REVERSE
Length = 395
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 66/82 (80%), Gaps = 4/82 (4%)
Query: 139 RTPGKEKESDTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVLYDDGD 198
R+ GK+K SD +KYGE LVG R++VWWP D +FY GVV+S+ S++KKH+V Y+DGD
Sbjct: 20 RSSGKDKVSDARKYGEALVGSRIRVWWPMD----SKFYKGVVDSYVSSKKKHRVFYEDGD 75
Query: 199 EETLNLREEKWGVIKKADSDAD 220
+ETL+L++E+W +I++ D++++
Sbjct: 76 KETLDLKKERWELIEEDDAESE 97
>AT4G31880.1 | Symbols: | binding | chr4:15419441-15423945 REVERSE
Length = 873
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 17/149 (11%)
Query: 88 GRGKANSEAAVAKSSAIDVDKEM-TVYSPRSGTKSTKS--ENTEEIPLTSAKRKRTPGKE 144
GRGKA E ++ SS D E V S + +KS K + EE P ++ KRKR+ G+
Sbjct: 545 GRGKAIDEESLHTSSG---DNEKPAVSSGKLASKSKKEAKQTVEESPNSNTKRKRSLGQG 601
Query: 145 KESDTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVLYDDGDEETLNL 204
K S GE+LVG R+KVWWP D+ +Y GVV S+D+A+KKH V+YDDGD+E L L
Sbjct: 602 KAS-----GESLVGSRIKVWWPMDQ----AYYKGVVESYDAAKKKHLVIYDDGDQEILYL 652
Query: 205 REEKWGVIKKAD--SDADGGHQRRKENQA 231
+ +KW + +++ D + Q +E A
Sbjct: 653 KNQKWSPLDESELSQDEEAADQTGQEEDA 681
>AT1G15940.1 | Symbols: | binding | chr1:5473666-5478044 FORWARD
Length = 990
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 96/197 (48%), Gaps = 35/197 (17%)
Query: 42 AKKNSAKKLGEHKSDI---NAKKHSAKKLDEQKGGSGSSSRKLENN-------------- 84
AKK + KK K D+ N KKH D K G S K +N
Sbjct: 438 AKKQTVKKTNPAKEDLTKSNVKKHE----DGIKTGKSSKKEKADNGLAKTSAKKPLAETM 493
Query: 85 --KKSGRGKANSEAAVAKSSAIDVDKEM------TVYSPRSGTKSTKSENTEEIPLTSAK 136
K SG+ +S+A S +D + R+ T +TK +E+ P + K
Sbjct: 494 MVKPSGKKLVHSDAKKKNSEGASMDTPIPQSSKSKKKDSRATTPATK--KSEQAPKSHPK 551
Query: 137 RKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVLYDD 196
KR G+E ES+T + GE LVG RV VWWP D+ +FY GV+ S+ +K H+V Y D
Sbjct: 552 MKRIAGEEVESNTNELGEELVGKRVNVWWPLDK----KFYEGVIKSYCRVKKMHQVTYSD 607
Query: 197 GDEETLNLREEKWGVIK 213
GD E LNL++E++ +I+
Sbjct: 608 GDVEELNLKKERFKIIE 624
>AT1G80810.2 | Symbols: | binding | chr1:30370467-30373790 FORWARD
Length = 774
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 8/97 (8%)
Query: 124 SENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSF 183
+E+ EE P + R+RT KE + +GE+LVG RV +WWP D+ FY GV++S+
Sbjct: 476 NESEEETPKSHPTRRRTVRKEV---SDGFGEDLVGKRVNIWWPLDK----TFYEGVIDSY 528
Query: 184 DSARKKHKVLYDDGDEETLNLREEKWGVIKKADSDAD 220
+ +K H+V+Y DGD E LNL EE+W +++ D+ AD
Sbjct: 529 CTRKKMHRVIYSDGDSEELNLTEERWELLED-DTSAD 564
>AT1G80810.1 | Symbols: | binding | chr1:30370467-30373790 FORWARD
Length = 773
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 8/97 (8%)
Query: 124 SENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSF 183
+E+ EE P + R+RT KE + +GE+LVG RV +WWP D+ FY GV++S+
Sbjct: 476 NESEEETPKSHPTRRRTVRKEV---SDGFGEDLVGKRVNIWWPLDK----TFYEGVIDSY 528
Query: 184 DSARKKHKVLYDDGDEETLNLREEKWGVIKKADSDAD 220
+ +K H+V+Y DGD E LNL EE+W +++ D+ AD
Sbjct: 529 CTRKKMHRVIYSDGDSEELNLTEERWELLED-DTSAD 564
>AT5G47690.3 | Symbols: | binding | chr5:19335125-19344240 FORWARD
Length = 1607
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 6/79 (7%)
Query: 136 KRKRTPGKEKES--DTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVL 193
KRK G K S + K + L+G R++VWWP D+ RFY G V S+DS +++H +L
Sbjct: 1346 KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDK----RFYEGTVKSYDSTKQRHVIL 1401
Query: 194 YDDGDEETLNLREEKWGVI 212
Y+DGD E LNL++E+W +I
Sbjct: 1402 YEDGDVEVLNLKKEQWELI 1420
>AT5G47690.2 | Symbols: | binding | chr5:19335125-19344240 FORWARD
Length = 1606
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 6/79 (7%)
Query: 136 KRKRTPGKEKES--DTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVL 193
KRK G K S + K + L+G R++VWWP D+ RFY G V S+DS +++H +L
Sbjct: 1346 KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDK----RFYEGTVKSYDSTKQRHVIL 1401
Query: 194 YDDGDEETLNLREEKWGVI 212
Y+DGD E LNL++E+W +I
Sbjct: 1402 YEDGDVEVLNLKKEQWELI 1420
>AT5G47690.1 | Symbols: | binding | chr5:19335125-19344240 FORWARD
Length = 1605
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 6/79 (7%)
Query: 136 KRKRTPGKEKES--DTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVL 193
KRK G K S + K + L+G R++VWWP D+ RFY G V S+DS +++H +L
Sbjct: 1345 KRKNVSGLAKCSTKENKLVNDELIGCRIEVWWPMDK----RFYEGTVKSYDSTKQRHVIL 1400
Query: 194 YDDGDEETLNLREEKWGVI 212
Y+DGD E LNL++E+W +I
Sbjct: 1401 YEDGDVEVLNLKKEQWELI 1419
>AT4G32970.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT4G32960.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO43777.1); contains
domain Tudor/PWWP/MBT (SSF63748); contains domain
ANDROGEN INDUCED INHIBITOR OF PROLIFERATION (AS3) /
PDS5-RELATED (PTHR12663) | chr4:15910348-15914303
REVERSE
Length = 750
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 99 AKSSAIDVDKEMTVYSPRSGTKSTKSENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVG 158
AK A+ DK S TK K + E+ P T+ KR + GKEK SD KKY E +VG
Sbjct: 234 AKKPAVSCDK-----SASDSTKGAK-QPLEKKPKTNTKRIHSLGKEKTSDFKKYDEKIVG 287
Query: 159 LRVKVWWPEDREIFYRFYTGVVNSFDSARKKHK 191
RVK+WWP DR +Y VV S+ SA+++H+
Sbjct: 288 SRVKIWWPLDRA----YYEAVVISYCSAKERHR 316
>AT4G02070.1 | Symbols: MSH6-1, ATMSH6, MSH6 | MSH6 (MUTS HOMOLOG
6-1) | chr4:906079-912930 FORWARD
Length = 1324
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 6/66 (9%)
Query: 152 YGENLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEK--W 209
YG+ +VG +V+V+WP D+ ++Y G V +D KH V Y+DG+EE+L+L +EK W
Sbjct: 120 YGDEVVGKQVRVYWPLDK----KWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEW 175
Query: 210 GVIKKA 215
V +K+
Sbjct: 176 VVGEKS 181
>AT1G77600.1 | Symbols: | binding | chr1:29157784-29167856 REVERSE
Length = 1285
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 148 DTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVLYDDGDEETLNLREE 207
D +GE ++G R+K+ P D FY G V F+S HK+++D+GD E + L E
Sbjct: 1131 DISNHGEAIIGQRIKLLSPTDG----CFYPGTVEKFNSKSNSHKIIFDNGDVELVCLDSE 1186
Query: 208 KW 209
W
Sbjct: 1187 SW 1188
>AT4G32620.1 | Symbols: | nucleic acid binding |
chr4:15731974-15737228 FORWARD
Length = 1539
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 156 LVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVI 212
L+ ++KV+WP D R+Y G V+ FD + H V YDD DEE +NL+ E++ ++
Sbjct: 355 LLNKKIKVFWPLDE----RWYHGFVDGFDGDKNLHHVKYDDRDEEWINLQGERFKIL 407
>AT1G05830.2 | Symbols: | trithorax protein, putative / PHD finger
family protein / SET domain-containing protein |
chr1:1754451-1761224 FORWARD
Length = 1056
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 155 NLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEK 208
+ +GL+ KV+WP D +Y G + ++ K H V Y DGD E L LR EK
Sbjct: 219 HFIGLQCKVFWPLDA----VWYPGSIVGYNVETKHHIVKYGDGDGEELALRREK 268
>AT1G05830.1 | Symbols: | trithorax protein, putative / PHD finger
family protein / SET domain-containing protein |
chr1:1754451-1761224 FORWARD
Length = 1056
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 155 NLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEK 208
+ +GL+ KV+WP D +Y G + ++ K H V Y DGD E L LR EK
Sbjct: 219 HFIGLQCKVFWPLDA----VWYPGSIVGYNVETKHHIVKYGDGDGEELALRREK 268