Miyakogusa Predicted Gene
- chr1.CM0410.180.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.CM0410.180.nc + phase: 0
(404 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G29575.4 | Symbols: | similar to TMAC2 (TWO OR MORE ABRES-CO... 129 3e-30
AT3G29575.3 | Symbols: | similar to TMAC2 (TWO OR MORE ABRES-CO... 129 3e-30
AT3G29575.1 | Symbols: | similar to TMAC2 (TWO OR MORE ABRES-CO... 129 3e-30
AT1G13740.1 | Symbols: | similar to unknown protein [Arabidopsi... 110 1e-24
AT1G69260.1 | Symbols: | similar to unknown protein [Arabidopsi... 105 6e-23
AT3G02140.1 | Symbols: TMAC2 | TMAC2 (TWO OR MORE ABRES-CONTAINI... 98 1e-20
AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) fami... 92 6e-19
AT4G28910.3 | Symbols: | similar to nuclear transport factor 2 ... 64 1e-10
AT4G28910.1 | Symbols: | similar to nuclear transport factor 2 ... 64 1e-10
AT4G28910.2 | Symbols: | similar to nuclear transport factor 2 ... 64 1e-10
>AT3G29575.4 | Symbols: | similar to TMAC2 (TWO OR MORE
ABRES-CONTAINING GENE 2) [Arabidopsis thaliana]
(TAIR:AT3G02140.1); similar to unnamed protein product
[Vitis vinifera] (GB:CAO49169.1); contains InterPro
domain Protein of unknown function DUF1675
(InterPro:IPR012463) | chr3:11384895-11386136 REVERSE
Length = 231
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 70/83 (84%), Gaps = 1/83 (1%)
Query: 323 QNRNKDTVKNMLEDMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFV 382
+N K+ +N++EDMP VST G PNGKKI GFLYRY KGEEV+I+CVCHG F++PAEFV
Sbjct: 149 ENLGKEASQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFV 208
Query: 383 KHAGGEDVANPLKHIVVSPS-FL 404
KHAGG DVA+PLKHIVV+PS FL
Sbjct: 209 KHAGGGDVAHPLKHIVVNPSPFL 231
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 32/103 (31%)
Query: 80 MNGRFGVDPNAAKKIKRTTSKPEFVNQARNEEMXXXXXXXXXXXXXXXXXXXXXXXXXXX 139
+NGRFGVDP A ++ R+TS + V R+
Sbjct: 24 LNGRFGVDPLAKTRLMRSTSVLDLVVNDRS------------------------------ 53
Query: 140 XXHLIRTCSLPXXXXXXXXXXXXLQTLRRMEARRKRSEKQQRN 182
L RTCSLP LQ+LRR+EA+RKRSEKQ+++
Sbjct: 54 --GLSRTCSLPVETEEEWRKRKELQSLRRLEAKRKRSEKQRKH 94
>AT3G29575.3 | Symbols: | similar to TMAC2 (TWO OR MORE
ABRES-CONTAINING GENE 2) [Arabidopsis thaliana]
(TAIR:AT3G02140.1); similar to unnamed protein product
[Vitis vinifera] (GB:CAO49169.1); contains InterPro
domain Protein of unknown function DUF1675
(InterPro:IPR012463) | chr3:11384895-11386136 REVERSE
Length = 231
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 70/83 (84%), Gaps = 1/83 (1%)
Query: 323 QNRNKDTVKNMLEDMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFV 382
+N K+ +N++EDMP VST G PNGKKI GFLYRY KGEEV+I+CVCHG F++PAEFV
Sbjct: 149 ENLGKEASQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFV 208
Query: 383 KHAGGEDVANPLKHIVVSPS-FL 404
KHAGG DVA+PLKHIVV+PS FL
Sbjct: 209 KHAGGGDVAHPLKHIVVNPSPFL 231
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 32/103 (31%)
Query: 80 MNGRFGVDPNAAKKIKRTTSKPEFVNQARNEEMXXXXXXXXXXXXXXXXXXXXXXXXXXX 139
+NGRFGVDP A ++ R+TS + V R+
Sbjct: 24 LNGRFGVDPLAKTRLMRSTSVLDLVVNDRS------------------------------ 53
Query: 140 XXHLIRTCSLPXXXXXXXXXXXXLQTLRRMEARRKRSEKQQRN 182
L RTCSLP LQ+LRR+EA+RKRSEKQ+++
Sbjct: 54 --GLSRTCSLPVETEEEWRKRKELQSLRRLEAKRKRSEKQRKH 94
>AT3G29575.1 | Symbols: | similar to TMAC2 (TWO OR MORE
ABRES-CONTAINING GENE 2) [Arabidopsis thaliana]
(TAIR:AT3G02140.1); similar to unnamed protein product
[Vitis vinifera] (GB:CAO49169.1); contains InterPro
domain Protein of unknown function DUF1675
(InterPro:IPR012463) | chr3:11384895-11386136 REVERSE
Length = 231
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 70/83 (84%), Gaps = 1/83 (1%)
Query: 323 QNRNKDTVKNMLEDMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFV 382
+N K+ +N++EDMP VST G PNGKKI GFLYRY KGEEV+I+CVCHG F++PAEFV
Sbjct: 149 ENLGKEASQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFV 208
Query: 383 KHAGGEDVANPLKHIVVSPS-FL 404
KHAGG DVA+PLKHIVV+PS FL
Sbjct: 209 KHAGGGDVAHPLKHIVVNPSPFL 231
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 32/103 (31%)
Query: 80 MNGRFGVDPNAAKKIKRTTSKPEFVNQARNEEMXXXXXXXXXXXXXXXXXXXXXXXXXXX 139
+NGRFGVDP A ++ R+TS + V R+
Sbjct: 24 LNGRFGVDPLAKTRLMRSTSVLDLVVNDRS------------------------------ 53
Query: 140 XXHLIRTCSLPXXXXXXXXXXXXLQTLRRMEARRKRSEKQQRN 182
L RTCSLP LQ+LRR+EA+RKRSEKQ+++
Sbjct: 54 --GLSRTCSLPVETEEEWRKRKELQSLRRLEAKRKRSEKQRKH 94
>AT1G13740.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT1G69260.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO41856.1); contains
InterPro domain Protein of unknown function DUF1675
(InterPro:IPR012463) | chr1:4713966-4715155 FORWARD
Length = 348
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 56/69 (81%)
Query: 334 LEDMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVANP 393
L DMP V TKG PNG++++G LY+Y KGEEV+I+C+CHG F+TPAEFVKH GG DV P
Sbjct: 276 LVDMPCVFTKGDGPNGRRVDGILYKYGKGEEVRIMCICHGSFLTPAEFVKHGGGGDVDRP 335
Query: 394 LKHIVVSPS 402
L+HIVV+ S
Sbjct: 336 LRHIVVNTS 344
>AT1G69260.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT1G13740.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO41856.1); contains
InterPro domain Protein of unknown function DUF1675
(InterPro:IPR012463) | chr1:26042977-26044233 FORWARD
Length = 345
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%), Gaps = 3/72 (4%)
Query: 336 DMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVANPLK 395
+MP V TKG PNGK+++G LYRY GEEV+I+CVCHG F++PA+FVKHAGG V +PL+
Sbjct: 273 EMPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGDFLSPADFVKHAGGPHVDHPLR 332
Query: 396 HIVV---SPSFL 404
HIVV SPS L
Sbjct: 333 HIVVNTSSPSNL 344
>AT3G02140.1 | Symbols: TMAC2 | TMAC2 (TWO OR MORE ABRES-CONTAINING
GENE 2) | chr3:385485-386444 REVERSE
Length = 319
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 61/87 (70%), Gaps = 9/87 (10%)
Query: 322 LQNRNKDTVKNMLEDMPSVSTKGVSPNGKKIEGFLYRYS-KGEEVKILCVCHGLFMTPAE 380
++N + +N+LEDMP VST+ V +GK++EGFLY Y EEVKI+CVCHG F++PAE
Sbjct: 226 VENSGMEKARNILEDMPCVSTRDVGADGKRVEGFLYWYGGNKEEVKIVCVCHGSFLSPAE 285
Query: 381 FVKHA--------GGEDVANPLKHIVV 399
FV+H GG+ + NPL+HIVV
Sbjct: 286 FVRHGGGTVSDDDGGDVMINPLRHIVV 312
>AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
| chr3:2300585-2308311 REVERSE
Length = 1294
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 5/124 (4%)
Query: 282 DNMLQNGELKSPATSGARVAENSGKIAAVTMRTQANGHPPLQNRNKDTVKNML--EDMPS 339
+N+L E T G++ AE + + + T+ +G PP + N + ++L MP
Sbjct: 165 NNILTGTEQTVHNTDGSKDAET--QEWSNSSVTKESGKPPKPHTNSNGNGSLLPFAQMPC 222
Query: 340 VSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVANPLKHIVV 399
V++ G P GK + GFLYRYSK E + I+CVCHG +PAEF+ HAGG +V++PL+HI V
Sbjct: 223 VTSTGNGPEGKTVNGFLYRYSKSE-ISIICVCHGTSFSPAEFIVHAGGTNVSHPLRHITV 281
Query: 400 SPSF 403
F
Sbjct: 282 GDEF 285
>AT4G28910.3 | Symbols: | similar to nuclear transport factor 2
(NTF2) family protein / RNA recognition motif
(RRM)-containing protein [Arabidopsis thaliana]
(TAIR:AT3G07250.1); similar to unnamed protein product
[Vitis vinifera] (GB:CAO65474.1); contains InterPro
domain Protein of unknown function DUF1675
(InterPro:IPR012463) | chr4:14264336-14265686 REVERSE
Length = 425
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 336 DMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVA 391
++P VST G P+G+ I G YRY+ ++KI+C CHG M+P EFV+HA E V+
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRYN-ANQIKIVCACHGSHMSPEEFVRHASEEYVS 411
>AT4G28910.1 | Symbols: | similar to nuclear transport factor 2
(NTF2) family protein / RNA recognition motif
(RRM)-containing protein [Arabidopsis thaliana]
(TAIR:AT3G07250.1); similar to unnamed protein product
[Vitis vinifera] (GB:CAO65474.1); contains InterPro
domain Protein of unknown function DUF1675
(InterPro:IPR012463) | chr4:14264336-14265686 REVERSE
Length = 425
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 336 DMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVA 391
++P VST G P+G+ I G YRY+ ++KI+C CHG M+P EFV+HA E V+
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRYN-ANQIKIVCACHGSHMSPEEFVRHASEEYVS 411
>AT4G28910.2 | Symbols: | similar to nuclear transport factor 2
(NTF2) family protein / RNA recognition motif
(RRM)-containing protein [Arabidopsis thaliana]
(TAIR:AT3G07250.1); similar to unnamed protein product
[Vitis vinifera] (GB:CAO65474.1); contains InterPro
domain Protein of unknown function DUF1675
(InterPro:IPR012463) | chr4:14264336-14265686 REVERSE
Length = 425
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 336 DMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGEDVA 391
++P VST G P+G+ I G YRY+ ++KI+C CHG M+P EFV+HA E V+
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRYN-ANQIKIVCACHGSHMSPEEFVRHASEEYVS 411