Miyakogusa Predicted Gene
- chr1.CM0098.420.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.CM0098.420.nd - phase: 0 /partial
(193 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56860.2 | Symbols: UBA2A | UBA2A; AU-rich element binding / ... 171 2e-43
AT3G56860.1 | Symbols: UBA2A | UBA2A; RNA binding | chr3:2106168... 171 2e-43
AT3G56860.3 | Symbols: UBA2A | UBA2A; RNA binding | chr3:2106168... 171 2e-43
AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing... 155 1e-38
AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing... 155 1e-38
AT2G22090.1 | Symbols: UBA1A | UBA1A; AU-rich element binding / ... 116 1e-26
AT2G22090.2 | Symbols: UBA1A | UBA1A; RNA binding | chr2:9396487... 115 1e-26
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 107 5e-24
AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing... 107 6e-24
AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing... 88 3e-18
AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing... 88 3e-18
AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing... 67 6e-12
AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing... 65 2e-11
AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230 FOR... 65 3e-11
AT1G22910.3 | Symbols: | RNA recognition motif (RRM)-containing... 64 8e-11
AT1G22910.2 | Symbols: | RNA recognition motif (RRM)-containing... 64 8e-11
AT1G22910.1 | Symbols: | RNA recognition motif (RRM)-containing... 63 9e-11
AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein, puta... 63 1e-10
AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein, puta... 63 1e-10
AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing... 62 2e-10
AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing... 61 4e-10
AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing... 60 7e-10
AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing... 60 1e-09
AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing... 60 1e-09
AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 58 3e-09
AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 58 3e-09
AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing... 57 7e-09
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 57 8e-09
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 57 8e-09
AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 2e-08
AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide bind... 55 2e-08
AT3G06970.1 | Symbols: | RNA binding | chr3:2199659-2201156 REV... 55 2e-08
AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 55 3e-08
AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 55 3e-08
AT4G39260.4 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 55 3e-08
AT5G53680.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 5e-08
AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-bindi... 54 6e-08
AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 6e-08
AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 54 6e-08
AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing... 53 1e-07
AT4G13850.3 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 52 2e-07
AT4G13850.2 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 52 2e-07
AT4G13850.1 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 52 2e-07
AT4G13850.4 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 52 2e-07
AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleoti... 51 6e-07
AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 50 6e-07
AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-bindi... 50 7e-07
AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 9e-07
AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein | chr... 50 1e-06
AT3G14100.1 | Symbols: | oligouridylate-binding protein, putati... 48 3e-06
AT2G27330.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 5e-06
AT5G53720.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 6e-06
AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 7e-06
AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 7e-06
AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS ... 47 7e-06
AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing... 47 7e-06
AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,... 47 8e-06
AT5G47320.1 | Symbols: RPS19 | RPS19 (40S ribosomal protein S19)... 47 9e-06
AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing... 47 9e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 9e-06
AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 47 9e-06
AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 32... 46 1e-05
AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-bindi... 46 1e-05
AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 46 1e-05
AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing... 46 1e-05
AT5G06210.1 | Symbols: | RNA-binding protein, putative | chr5:1... 46 2e-05
AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing... 46 2e-05
AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing... 46 2e-05
AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing... 46 2e-05
AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); ... 45 2e-05
AT1G17370.1 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING PRO... 45 3e-05
AT1G17370.2 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING PRO... 45 3e-05
AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL PR... 45 3e-05
AT3G08000.1 | Symbols: | RNA-binding protein, putative | chr3:2... 45 3e-05
AT2G21690.1 | Symbols: | RNA-binding protein, putative | chr2:9... 45 3e-05
AT5G06000.1 | Symbols: ATEIF3G2, EIF3G2 | EIF3G2 (eukaryotic tra... 45 3e-05
AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 45 4e-05
AT3G12640.1 | Symbols: | RNA binding / nucleic acid binding | c... 44 4e-05
AT3G46020.1 | Symbols: | RNA-binding protein, putative | chr3:1... 44 4e-05
AT1G71800.1 | Symbols: | cleavage stimulation factor, putative ... 44 8e-05
AT2G37510.1 | Symbols: | RNA-binding protein, putative | chr2:1... 44 8e-05
AT5G08695.1 | Symbols: | nucleic acid binding / nucleotide bind... 44 9e-05
AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 44 9e-05
AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 44 9e-05
AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); ... 43 9e-05
AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 43 1e-04
AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 43 1e-04
AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing... 43 1e-04
AT4G03110.1 | Symbols: | RNA-binding protein, putative | chr4:1... 43 1e-04
AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 43 1e-04
AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 43 1e-04
AT4G24770.1 | Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31 (31... 42 2e-04
AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 42 2e-04
AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic tra... 42 2e-04
AT1G11650.1 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3... 42 2e-04
AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing... 42 2e-04
AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70 ... 42 3e-04
AT1G03457.2 | Symbols: | RNA-binding protein, putative | chr1:8... 42 3e-04
AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3... 42 3e-04
AT1G03457.1 | Symbols: | RNA-binding protein, putative | chr1:8... 42 3e-04
AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633 F... 40 6e-04
AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding | chr4:1... 40 6e-04
AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RN... 40 7e-04
AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 40 7e-04
AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN ... 40 9e-04
>AT3G56860.2 | Symbols: UBA2A | UBA2A; AU-rich element binding / RNA
binding | chr3:21061687-21063123 REVERSE
Length = 478
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 89/105 (84%)
Query: 82 DDEPIQKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTAT 141
DDEPIQ LLEP KEQ++SLL +AA H DVA+RIR+VADED HRKIFVHGLGWDT
Sbjct: 95 DDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTE 154
Query: 142 TLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
TL+ AF+QYG IEDCKAV DK++GKSKGYGFIL+KSR GARNALK
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 120 ADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRR 179
++ + + +KI+V +G + L+ F ++G IE+ DK TG+ KG+ ++KS
Sbjct: 238 SNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSE 297
Query: 180 GARNALKD 187
A+ AL++
Sbjct: 298 SAKRALEE 305
>AT3G56860.1 | Symbols: UBA2A | UBA2A; RNA binding |
chr3:21061687-21063123 REVERSE
Length = 478
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 89/105 (84%)
Query: 82 DDEPIQKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTAT 141
DDEPIQ LLEP KEQ++SLL +AA H DVA+RIR+VADED HRKIFVHGLGWDT
Sbjct: 95 DDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTE 154
Query: 142 TLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
TL+ AF+QYG IEDCKAV DK++GKSKGYGFIL+KSR GARNALK
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 120 ADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRR 179
++ + + +KI+V +G + L+ F ++G IE+ DK TG+ KG+ ++KS
Sbjct: 238 SNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSE 297
Query: 180 GARNALKD 187
A+ AL++
Sbjct: 298 SAKRALEE 305
>AT3G56860.3 | Symbols: UBA2A | UBA2A; RNA binding |
chr3:21061687-21063123 REVERSE
Length = 478
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 89/105 (84%)
Query: 82 DDEPIQKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTAT 141
DDEPIQ LLEP KEQ++SLL +AA H DVA+RIR+VADED HRKIFVHGLGWDT
Sbjct: 95 DDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTE 154
Query: 142 TLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
TL+ AF+QYG IEDCKAV DK++GKSKGYGFIL+KSR GARNALK
Sbjct: 155 TLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 120 ADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRR 179
++ + + +KI+V +G + L+ F ++G IE+ DK TG+ KG+ ++KS
Sbjct: 238 SNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSE 297
Query: 180 GARNALKD 187
A+ AL++
Sbjct: 298 SAKRALEE 305
>AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17134216-17135571 FORWARD
Length = 451
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 83/98 (84%)
Query: 89 LLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQ 148
LLEP K+Q++ LL +AA HRDVA+RIR VADED+ HRKIFVHGLGWDT A +L+ AF+
Sbjct: 90 LLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSLIDAFK 149
Query: 149 QYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
QYG IEDCK V DKV+G+SKGYGFILFKSR GARNALK
Sbjct: 150 QYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 127 RKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
RKI+V + D L+ F ++G IE+ DK TG+ KG+ +++S A+ AL+
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 187 D 187
+
Sbjct: 287 E 287
>AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17134216-17135571 FORWARD
Length = 451
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 83/98 (84%)
Query: 89 LLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQ 148
LLEP K+Q++ LL +AA HRDVA+RIR VADED+ HRKIFVHGLGWDT A +L+ AF+
Sbjct: 90 LLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSLIDAFK 149
Query: 149 QYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
QYG IEDCK V DKV+G+SKGYGFILFKSR GARNALK
Sbjct: 150 QYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 127 RKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
RKI+V + D L+ F ++G IE+ DK TG+ KG+ +++S A+ AL+
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 187 D 187
+
Sbjct: 287 E 287
>AT2G22090.1 | Symbols: UBA1A | UBA1A; AU-rich element binding / RNA
binding | chr2:9395651-9397530 REVERSE
Length = 343
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 76/106 (71%)
Query: 82 DDEPIQKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTAT 141
D E +++LL+P K+Q++ L+ A+ + + + AD DV+HRKIFV+GL W+TT
Sbjct: 59 DPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRE 118
Query: 142 TLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
TLV F+ YG IE+C V DK TGK+KG+GF++FK+R+GA+ ALK+
Sbjct: 119 TLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
>AT2G22090.2 | Symbols: UBA1A | UBA1A; RNA binding |
chr2:9396487-9397530 REVERSE
Length = 347
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 76/106 (71%)
Query: 82 DDEPIQKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTAT 141
D E +++LL+P K+Q++ L+ A+ + + + AD DV+HRKIFV+GL W+TT
Sbjct: 59 DPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRE 118
Query: 142 TLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
TLV F+ YG IE+C V DK TGK+KG+GF++FK+R+GA+ ALK+
Sbjct: 119 TLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8390938-8393686 FORWARD
Length = 613
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 68/105 (64%)
Query: 82 DDEPIQKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTAT 141
D E I++LL KE++++L+ A + I + AD D++ R IFV G GWDTT
Sbjct: 363 DKEDIKQLLVAYSKEELVNLIYKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQE 422
Query: 142 TLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
L AF+ YG IE+C V DK TG+ KGYGF++FK+R+GAR ALK
Sbjct: 423 NLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9399477-9400625 REVERSE
Length = 382
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 69/106 (65%)
Query: 82 DDEPIQKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTAT 141
D E I+ LLE KE++I+L+ A + + + AD D S R IFV GLGWDTT
Sbjct: 118 DKEDIKNLLESYSKEELINLIYKTAEKGSKLISAVFESADRDSSQRNIFVRGLGWDTTHE 177
Query: 142 TLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
L AF+ YG I +C V DK TG++KG+GF+LFK+R+GAR ALK+
Sbjct: 178 NLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223
>AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052851-5054065 FORWARD
Length = 404
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 62/101 (61%)
Query: 87 QKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYA 146
+K++E +Q++ LL +A H DV + +R AD D+S RK+F+ GL DTT L
Sbjct: 35 RKIIERFTTDQLLDLLQEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSL 94
Query: 147 FQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
F YG +E+ + DKVTGKSKGYGF+ F GA ALK+
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 105 AASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVT 164
AAS ++ +I D+S RKI+V + +D A L+ F YG +E+ DKVT
Sbjct: 150 AASGNQGTGSQI-----ADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVT 204
Query: 165 GKSKGYGFILFKSRRGARNALKDEFVIM 192
GKS+G+ ++K+ GA+ AL D ++
Sbjct: 205 GKSRGFALFVYKTAEGAQAALADPVKVI 232
>AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052851-5054065 FORWARD
Length = 404
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 62/101 (61%)
Query: 87 QKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYA 146
+K++E +Q++ LL +A H DV + +R AD D+S RK+F+ GL DTT L
Sbjct: 35 RKIIERFTTDQLLDLLQEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSL 94
Query: 147 FQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
F YG +E+ + DKVTGKSKGYGF+ F GA ALK+
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 105 AASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVT 164
AAS ++ +I D+S RKI+V + +D A L+ F YG +E+ DKVT
Sbjct: 150 AASGNQGTGSQI-----ADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVT 204
Query: 165 GKSKGYGFILFKSRRGARNALKDEFVIM 192
GKS+G+ ++K+ GA+ AL D ++
Sbjct: 205 GKSRGFALFVYKTAEGAQAALADPVKVI 232
>AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:28691826-28693400 REVERSE
Length = 285
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D + K+FV GL W+T + TL F+QYG I + + DK TG+SKGYGF+ F+ AR
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 183 NALKDEFVIM 192
A D I+
Sbjct: 80 RACADPTPII 89
>AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:7262868-7264823 REVERSE
Length = 274
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D + K+FV GL W+T + TL F QYG I + +TDK TG+SKGYGF+ F+ AR
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 183 NALKDEFVIM 192
A D I+
Sbjct: 80 RACVDPTPII 89
>AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230
FORWARD
Length = 291
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D +H K+FV GL W+T + F Q+G I + +TDK TGKSKGYGF+ F+ A
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 183 NALKDEFVIM 192
A+ D ++
Sbjct: 73 RAVADPNPVI 82
>AT1G22910.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105797-8107938 FORWARD
Length = 347
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D ++ K+FV GL W+T T+ F+Q+G I + +TDK +G+SKGYGF+ F+ AR
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 183 NALKD 187
+A D
Sbjct: 69 SACVD 73
>AT1G22910.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105797-8107607 FORWARD
Length = 242
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D ++ K+FV GL W+T T+ F+Q+G I + +TDK +G+SKGYGF+ F+ AR
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 183 NALKD 187
+A D
Sbjct: 69 SACVD 73
>AT1G22910.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105797-8107648 FORWARD
Length = 249
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D ++ K+FV GL W+T T+ F+Q+G I + +TDK +G+SKGYGF+ F+ AR
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 183 NALKD 187
+A D
Sbjct: 69 SACVD 73
>AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
+IFV GL WD T L F +YG I +C+ + + TG+ +G+GFI F RRGA +A+K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
>AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
+IFV GL WD T L F +YG I +C+ + + TG+ +G+GFI F RRGA +A+K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
>AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29452210-29455074 FORWARD
Length = 287
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D ++ K+FV GL W+T + F+Q+G I + +TDK TGKSKGYGF+ F+ A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 183 NALKD 187
A+ D
Sbjct: 73 RAVAD 77
>AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29452210-29454139 FORWARD
Length = 271
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D ++ K+FV GL W+T + F+Q+G I + +TDK TGKSKGYGF+ F+ A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 183 NALKDE 188
A+ D
Sbjct: 73 RAVADP 78
>AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:19236586-19238017 FORWARD
Length = 304
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
KIFV GL W+T T+ F+Q+G I + +TDK TG+SKGYGF+ FK A A ++
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
>AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144612-12146020 FORWARD
Length = 245
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGA 181
ED + K+FV GL W+T +L F+Q+G I + +TDK +G+SKGYGF+ F A
Sbjct: 2 EDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAA 61
Query: 182 RNALKDE 188
+ A D
Sbjct: 62 QKACVDP 68
>AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144612-12146020 FORWARD
Length = 244
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGA 181
ED + K+FV GL W+T +L F+Q+G I + +TDK +G+SKGYGF+ F A
Sbjct: 2 EDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAA 61
Query: 182 RNALKDE 188
+ A D
Sbjct: 62 QKACVDP 68
>AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding |
chr2:9272557-9273396 REVERSE
Length = 159
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 119 VADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSR 178
+A DV +R FV GL W T L AF QYG + D K + D+ TG+S+G+GF+ FK
Sbjct: 1 MASGDVEYR-CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDE 59
Query: 179 RGARNALK 186
+ ++A++
Sbjct: 60 KAMKDAIE 67
>AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding /
double-stranded DNA binding / single-stranded DNA
binding | chr2:9272557-9273396 REVERSE
Length = 176
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 119 VADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSR 178
+A DV +R FV GL W T L AF QYG + D K + D+ TG+S+G+GF+ FK
Sbjct: 1 MASGDVEYR-CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDE 59
Query: 179 RGARNALK 186
+ ++A++
Sbjct: 60 KAMKDAIE 67
>AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:17427345-17429584 FORWARD
Length = 379
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 127 RKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
RK+ V G+ WD + L ++G +EDC + D+ TG+S+G+G++ F S A+NALK
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 187 DEFVI 191
E +
Sbjct: 63 GEHFL 67
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+FV GL W T ++L AF +G + + + D+ TG+S+G+GF+ F A NA+K+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+FV GL W T ++L AF +G + + + D+ TG+S+G+GF+ F A NA+K+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
>AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:6067387-6069091 REVERSE
Length = 369
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+FV G+ W+TTA T F ++G + D +TD++TG +G+GF+ F A L++
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 188 EFVI 191
+ VI
Sbjct: 127 DHVI 130
>AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide binding
| chr5:3640350-3640877 REVERSE
Length = 175
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 110 RDVADRIRKVADEDVSHR--KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKS 167
RDVA + A+E+V R KI+V GL W+T L F+Q+G I V D+ TG+S
Sbjct: 36 RDVA---QHYANENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRS 92
Query: 168 KGYGFILFKSRRGARNALKD 187
+GYGF+ F+ A A ++
Sbjct: 93 EGYGFVTFRDAESATRACQN 112
>AT3G06970.1 | Symbols: | RNA binding | chr3:2199659-2201156
REVERSE
Length = 317
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 116 IRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
+ + + D KIFV L W TTA L F+Q+G + D V++ G+SKGYGFI F
Sbjct: 1 MSQTNNHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
Query: 176 KSRRGARNALKDEFVIM 192
+ AL++ I+
Sbjct: 61 RDYVSTVRALQNSKPII 77
>AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 126
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
+ FV GL W T L F Q+G + D K + D+ +G+S+G+GF+ FK + R+A+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
>AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 169
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
+ FV GL W T L F Q+G + D K + D+ +G+S+G+GF+ FK + R+A+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
>AT4G39260.4 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 105
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
+ FV GL W T L F Q+G + D K + D+ +G+S+G+GF+ FK + R+A+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
>AT5G53680.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:21815608-21816335 FORWARD
Length = 169
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D + KI+V GL W T L+ F+++G I V D+ T +S+GYGF+ FK A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 183 NALKD 187
A KD
Sbjct: 69 RACKD 73
>AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding
protein 5); RNA binding | chr1:27919007-27920518 FORWARD
Length = 289
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 124 VSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARN 183
+S KIFV G+ + T L AF +YG + D K + D+ TG+S+G+ F+ F S A N
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 184 ALK 186
A++
Sbjct: 91 AMQ 93
>AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20284841-20286805 REVERSE
Length = 261
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+FV GL WDT + F +YG I + ++DK+T +SKGYGF+ FK + A A +D
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 188 EFVIM 192
I+
Sbjct: 78 STPII 82
>AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 92
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
+ FV GL W T L F Q+G + D K + D+ +G+S+G+GF+ FK + R+A+++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
>AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22188558-22189882 FORWARD
Length = 156
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 129 IFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKS 177
+FV GL TT+ L AF Q+G + D K VTD+V+G SKG+GF+ + +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYAT 106
>AT4G13850.3 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2) | chr4:8021310-8022061 FORWARD
Length = 144
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+F+ GL W T +L AF +G + D K + D+ TG+S+G+GF+ F A A+ +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
>AT4G13850.2 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); RNA binding |
chr4:8021310-8022061 FORWARD
Length = 153
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+F+ GL W T +L AF +G + D K + D+ TG+S+G+GF+ F A A+ +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
>AT4G13850.1 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021310-8022061 FORWARD
Length = 158
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+F+ GL W T +L AF +G + D K + D+ TG+S+G+GF+ F A A+ +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
>AT4G13850.4 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2) | chr4:8021310-8022061 FORWARD
Length = 129
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+F+ GL W T +L AF +G + D K + D+ TG+S+G+GF+ F A A+ +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
>AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleotide
binding | chr3:9673190-9674292 FORWARD
Length = 245
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
ED +R F+ GL W T+ L AF++YG + + K V DK +G+S+G+GFI F
Sbjct: 3 EDPEYR-CFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITF 55
>AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr1:22097343-22098205 REVERSE
Length = 258
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 125 SHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNA 184
+ K+FV L W T+ +L AF++ G + + V D TG+S+GYGF+ + S+ A
Sbjct: 175 TEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETA 234
Query: 185 LK 186
L+
Sbjct: 235 LE 236
>AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding
protein 3); RNA binding | chr5:24578096-24579378 FORWARD
Length = 309
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 124 VSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARN 183
+S K+F+ G+ + +L AF +YG + D + + D+ TG+S+G+GF+ F S A +
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 184 ALK 186
A++
Sbjct: 97 AIQ 99
>AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:7331745-7333755 FORWARD
Length = 374
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 103 ADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDK 162
D+ + RD D V +K+F+ GL + T+ TL AF+ +G + + K + DK
Sbjct: 262 GDSTQDSRDQDDS----ESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 317
Query: 163 VTGKSKGYGFILFKSRRGARNALKD 187
++ +SKGY F+ + + A ALK+
Sbjct: 318 ISKRSKGYAFLEYTTEEAAGTALKE 342
>AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein |
chr5:1192462-1195414 FORWARD
Length = 310
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRR 179
+IFV GL + T L AF ++G I DC+ + ++ TG+S+G+GFI F RR
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRR 59
>AT3G14100.1 | Symbols: | oligouridylate-binding protein, putative
| chr3:4673034-4675957 FORWARD
Length = 427
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 41/67 (61%)
Query: 121 DEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRG 180
++ SH IFV L + T TL +F + + D + + D+ TG+S+G+GF+ F++++
Sbjct: 138 EDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQD 197
Query: 181 ARNALKD 187
A+ A+ +
Sbjct: 198 AQTAINE 204
>AT2G27330.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:11702428-11703641 REVERSE
Length = 116
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 129 IFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNAL 185
+FV G+ + +T TL AF QYG + + DK+ + KG+ ++ F S+ A AL
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
>AT5G53720.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:21823848-21824238 FORWARD
Length = 100
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
KI+V GL W T L+ F+++G I K V D T +SKG+GF+ F+ A A ++
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
>AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:16242711-16244651 FORWARD
Length = 423
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 90 LEPMGKEQIISLLADAASNHRDVADRIRKVADEDV----SHRKIFVHGLGWDTTATTLVY 145
++P G E +I D+ D K S KIFV GL +TT+ +
Sbjct: 1 MDPYGTETVIEDEIHDPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLK 60
Query: 146 AFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKDEFVIM 192
F +YG I D + D+ TG+ +G+GF+ + ++D +I+
Sbjct: 61 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIII 107
>AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445558-13447598 FORWARD
Length = 455
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+F+ G+ WDT L F +YG + + + D+ TG+++G+GFI+F A + D
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 188 EFVI 191
+ +I
Sbjct: 76 KHII 79
>AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS
THALIANA RNA-BINDING PROTEIN 1); RNA binding |
chr1:21731039-21732204 FORWARD
Length = 360
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D K+FV G+ +T+ L F +YGA+ + +KVTGK +G+GF+ F +
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 183 NALKDEFVIM 192
AL+D I+
Sbjct: 62 KALRDTHFIL 71
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 116 IRKVADEDVSHR--KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFI 173
+R+++ V+ R KIFV GL +TT F+++G D + D VT + +G+GF+
Sbjct: 107 LREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFV 166
Query: 174 LFKSRRGARNALKDEF 189
+ S ++ F
Sbjct: 167 TYDSEDSVEVVMQSNF 182
>AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445271-13447598 FORWARD
Length = 452
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+F+ G+ WDT L F +YG + + + D+ TG+++G+GFI+F A + D
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 72
Query: 188 EFVI 191
+ +I
Sbjct: 73 KHII 76
>AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative | chr5:20469903-20471191 REVERSE
Length = 289
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFI 173
+I+V L WD + L F ++G + D + V+D+ TG+S+G+GF+
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFV 253
>AT5G47320.1 | Symbols: RPS19 | RPS19 (40S ribosomal protein S19);
RNA binding | chr5:19221028-19222178 FORWARD
Length = 212
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNAL 185
K+++ GL T +L AF + + + + +T+KVTG+S+GYGF+ F S A +A+
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
>AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254855-4256628 FORWARD
Length = 358
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 120 ADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRR 179
+ + S KIF+ GL DTT T F +YG I D + D+ TG+ +G+GFI F
Sbjct: 12 SGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS 71
Query: 180 GARNALKDEFVI 191
++D VI
Sbjct: 72 VVDKVIEDTHVI 83
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKS 177
+D+ +KIFV G+ T L F +YG + + + + D T +S+G+GF++F S
Sbjct: 104 KDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDS 159
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17362319-17363754 REVERSE
Length = 352
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 129 IFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRR 179
++V G+ +D T L+ F QYG I D + DK TGKSKG+ F+ ++ +R
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQR 88
>AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr4:8231175-8232781
FORWARD
Length = 411
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
D K+FV G+ W+T L F YG + + DK+TG+ +G+GF++F
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIF 54
>AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 322);
RNA binding | chr3:19432597-19433833 FORWARD
Length = 329
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 112 VADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYG 171
+ D R D S K++ LGW+ T+ L AF + K + ++ TG+S+G+G
Sbjct: 207 IRDNNRSYVD---SPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFG 263
Query: 172 FILFKSRRGARNAL 185
FI F+S ++AL
Sbjct: 264 FISFESAENVQSAL 277
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
+++V L + T++ L F + G + D + V DKVT +S+G+GF+ S A+ A++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175
>AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-binding
protein 6); RNA binding | chr1:6415218-6416275 FORWARD
Length = 155
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
KIFV GL T L AF +G I D V D+ +G S+G+GF+ + S A NA++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
>AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 426
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 121 DEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRG 180
++ SH IFV L + T L +F + + D + + D+ TG+S+G+GF+ F++++
Sbjct: 142 EDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQD 201
Query: 181 ARNALKD 187
A+ A+ +
Sbjct: 202 AQTAINE 208
>AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254855-4256021 FORWARD
Length = 231
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 120 ADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRR 179
+ + S KIF+ GL DTT T F +YG I D + D+ TG+ +G+GFI F
Sbjct: 12 SGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS 71
Query: 180 GARNALKDEFVI 191
++D VI
Sbjct: 72 VVDKVIEDTHVI 83
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKS 177
+D+ +KIFV G+ T L F +YG + + + + D T +S+G+GF++F S
Sbjct: 104 KDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDS 159
>AT5G06210.1 | Symbols: | RNA-binding protein, putative |
chr5:1878498-1879516 FORWARD
Length = 146
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+F+ GL + TT L AF + G + + + V D+V+ +SKG+GF+ F S A+ AL +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
>AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519303-22520884 REVERSE
Length = 448
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
K+F+ G+ WDT L F YG + + + D+ TG+++G+GFI+F
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
K+F+ G+ WDT L F YG + + + D+ TG+++G+GFI+F
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
K+F+ G+ WDT L F YG + + + D+ TG+++G+GFI+F
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA
binding | chr1:8055588-8058788 FORWARD
Length = 660
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 106 ASNHRDVADRIRKV--ADEDVSHR-----KIFVHGLGWDTTATTLVYAFQQYGAIEDCKA 158
A N+ + DR ++ ++ D S R IF+ L L F +G I CK
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 159 VTDKVTGKSKGYGFILFKSRRGARNAL 185
D VTG+SKGYGF+ F+ A+ A+
Sbjct: 168 AMD-VTGRSKGYGFVQFEKEESAQAAI 193
>AT1G17370.1 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING
PROTEIN 1B); mRNA 3'-UTR binding | chr1:5951835-5954818
REVERSE
Length = 419
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 121 DEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRG 180
++ SH IFV L + T L F Y D + + D+ TG+S+G+GF+ F++++
Sbjct: 133 EDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQD 192
Query: 181 ARNALKD 187
A+ A+ +
Sbjct: 193 AQTAIDE 199
>AT1G17370.2 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING
PROTEIN 1B) | chr1:5951835-5954818 REVERSE
Length = 416
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 121 DEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRG 180
++ SH IFV L + T L F Y D + + D+ TG+S+G+GF+ F++++
Sbjct: 133 EDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQD 192
Query: 181 ARNALKD 187
A+ A+ +
Sbjct: 193 AQTAIDE 199
>AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL
PROTEIN U1A); RNA binding | chr3:18837457-18840473
REVERSE
Length = 427
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 129 IFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
+FV L ++++ + + F+ YG I+ VTD++T K KGY FI + R + A K
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197
>AT3G08000.1 | Symbols: | RNA-binding protein, putative |
chr3:2555040-2555835 REVERSE
Length = 143
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
K+F+ GL W +L AF +G + + + DK +G+S+G+GF+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>AT2G21690.1 | Symbols: | RNA-binding protein, putative |
chr2:9277194-9277677 REVERSE
Length = 117
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 130 FVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNAL 185
FV GL DT L F ++G + D K + D+ TGKS+ +GF+ F+ + +A+
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>AT5G06000.1 | Symbols: ATEIF3G2, EIF3G2 | EIF3G2 (eukaryotic
translation initiation factor 3G2); RNA binding /
translation initiation factor | chr5:1808170-1809743
FORWARD
Length = 308
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 110 RDVADRIRKVADEDVSH--RKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKS 167
R+ ADR +D H + V L DT L+ F+ +GA+ C D+ T S
Sbjct: 187 REGADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMS 246
Query: 168 KGYGFILFKSRRGARNAL 185
+G+GF+ F SR A+ A+
Sbjct: 247 RGFGFVSFVSREDAQRAI 264
>AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr2:15642059-15643410 REVERSE
Length = 289
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
+++V L W L F + G + + + + D+ +G+SKG+GF+ + S + +NA+K
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKS 177
K+FV L ++ + L F+ G +E + + DK+TG+S+G+GF+ S
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
>AT3G12640.1 | Symbols: | RNA binding / nucleic acid binding |
chr3:4014462-4017682 FORWARD
Length = 638
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGA 181
ED S R IFV + + T +L F ++G + VTD TG+ G +I F + A
Sbjct: 475 EDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAA 534
Query: 182 RNAL 185
NAL
Sbjct: 535 ENAL 538
>AT3G46020.1 | Symbols: | RNA-binding protein, putative |
chr3:16923496-16924235 REVERSE
Length = 102
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
++FV L TT +L F +G I++ + + D T + KG+GFI F S AR ALK
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
>AT1G71800.1 | Symbols: | cleavage stimulation factor, putative |
chr1:27003268-27005512 FORWARD
Length = 461
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 119 VADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSR 178
+A R +FV + +D T L + G + + VTD+ TGK KGYGF +K
Sbjct: 1 MASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 60
Query: 179 RGARNALKD 187
A +A ++
Sbjct: 61 ETALSARRN 69
>AT2G37510.1 | Symbols: | RNA-binding protein, putative |
chr2:15750190-15751582 REVERSE
Length = 142
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNA 184
++FV GL TT L AF +G + D + +TD+ +G+SKG+GF+ + + A A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKA 91
>AT5G08695.1 | Symbols: | nucleic acid binding / nucleotide binding
| chr5:2829342-2834190 FORWARD
Length = 690
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNAL 185
++FVHGL + TT L+ F ++G I + V DK T +G F+L+ A+ A+
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAM 285
>AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFI 173
K+FV L ++ + L F+ G +E + + DKVTG+S+G+GF+
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
>AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFI 173
K+FV L ++ + L F+ G +E + + DKVTG+S+G+GF+
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
>AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA
binding / translation initiation factor |
chr2:9950289-9953121 FORWARD
Length = 662
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
+FV L TL AF G I CK TD + G+S+GYGF+ F + A+NA++
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIE 192
>AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19319774-19321504
REVERSE
Length = 431
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
K+F+ G+ W+T+ L F +G + + + D+ TG+++G+GF++F
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19319774-19321504
REVERSE
Length = 431
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
K+F+ G+ W+T+ L F +G + + + D+ TG+++G+GF++F
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6744031-6746135 FORWARD
Length = 337
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 129 IFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
++V GL +D T + F YG++ K V D+ + K YGF+ F +RR A +A++D
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAIED 66
>AT4G03110.1 | Symbols: | RNA-binding protein, putative |
chr4:1376612-1379275 REVERSE
Length = 441
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 119 VADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSR 178
V E +F++ + + L AFQ +G + K DK TG SK +GF+ + S+
Sbjct: 341 VQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQ 400
Query: 179 RGARNAL 185
A+NA+
Sbjct: 401 AAAQNAI 407
>AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492881-2495108
FORWARD
Length = 495
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 126 HRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
+ K+F+ G+ WDT L F +G + + + D+ TG+++G+GF++F
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
>AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492881-2495058
FORWARD
Length = 494
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 126 HRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
+ K+F+ G+ WDT L F +G + + + D+ TG+++G+GF++F
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
>AT4G24770.1 | Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U)
binding | chr4:12766233-12767962 REVERSE
Length = 329
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
K+FV L +D + L F+Q G +E + + ++ T +S+G+GF+ S A A++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFI 173
+++V L WD L F ++G + + + V D+ TG+S+G+GF+
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFV 290
>AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr2:14163161-14164511
FORWARD
Length = 404
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
K+F+ G+ WDT L F +G + + +K TG+ +G+GF+ F
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAF 54
>AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic
translation initiation factor 3G1); RNA binding /
translation initiation factor | chr3:3578542-3580372
FORWARD
Length = 294
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 94 GKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAI 153
GK + A ++ V +R+ DE+ + V L DT L+ F +GA+
Sbjct: 184 GKAAYVPPSMRAGADRSAVGSDMRRRNDEN----SVRVTNLSEDTREPDLMELFHPFGAV 239
Query: 154 EDCKAVTDKVTGKSKGYGFILFKSRRGARNAL 185
D+ TG S+G+GF+ F SR A+ A+
Sbjct: 240 TRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
>AT1G11650.1 | Symbols: ATRBP45B | ATRBP45B; RNA binding |
chr1:3914895-3917301 FORWARD
Length = 306
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQ-QYGAIEDCKAVTDKVTGKSKGYGFILF 175
+D IFV L D T L+ F+ Y +++ K V D+VTG++KGYGF+ F
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
>AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:27647462-27649047 REVERSE
Length = 181
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
K++V GL + TT TL F+Q+G + V DKV + KG+ F+ +++ A A++
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
>AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70
kDa, putative | chr2:18020508-18022453 FORWARD
Length = 333
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 129 IFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKDE 188
+FV L TT TL +YG I++ + V VTG S+GYGF+ +++ + A +D
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 189 FVIMV 193
++
Sbjct: 126 HHSLI 130
>AT1G03457.2 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 438
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGA 181
E + +F++ + + L FQ +G + K DK TG SK +GFI + S+ A
Sbjct: 334 EGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAA 393
Query: 182 RNALK 186
+NA+
Sbjct: 394 QNAIN 398
>AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding |
chr1:3914895-3917941 FORWARD
Length = 405
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQ-QYGAIEDCKAVTDKVTGKSKGYGFILFK 176
+D IFV L D T L+ F+ Y +++ K V D+VTG++KGYGF+ F
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFS 205
>AT1G03457.1 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 429
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGA 181
E + +F++ + + L FQ +G + K DK TG SK +GFI + S+ A
Sbjct: 325 EGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAA 384
Query: 182 RNAL 185
+NA+
Sbjct: 385 QNAI 388
>AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633
FORWARD
Length = 816
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 112 VADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYG 171
VA + V+D+ + ++FV L + T L+ F +G I + V DK T +S+G
Sbjct: 279 VAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIA 338
Query: 172 FILF 175
+IL+
Sbjct: 339 YILY 342
>AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding |
chr4:13554989-13557769 REVERSE
Length = 415
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 129 IFVHGLGWDTTATTLVYAFQQ-YGAIEDCKAVTDKVTGKSKGYGFILF 175
+FV L D T L F+ Y +++ K V D+ TG+SKGYGF+ F
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRF 222
>AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA
binding | chr1:26994439-26997109 REVERSE
Length = 668
Score = 40.4 bits (93), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 108 NHRDVADRIRKV--ADEDVSHR-----KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVT 160
N+ + DR ++ ++ D S R +F+ L L F +G I CK
Sbjct: 106 NYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAM 165
Query: 161 DKVTGKSKGYGFILFKSRRGARNAL 185
D V G+SKGYGF+ F+ A+ A+
Sbjct: 166 D-VVGRSKGYGFVQFEKEETAQAAI 189
>AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 430
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 121 DEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIE----DCKAVTDKVTGKSKGYGFILFK 176
++ SH IFV L + T L +F + + D + + D+ TG+S+G+GF+ F+
Sbjct: 142 EDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFR 201
Query: 177 SRRGARNALKD 187
+++ A+ A+ +
Sbjct: 202 NQQDAQTAINE 212
>AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN
45A); RNA binding | chr5:22312638-22315352 FORWARD
Length = 387
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 129 IFVHGLGWDTTATTLVYAFQQ-YGAIEDCKAVTDKVTGKSKGYGFILF 175
IFV L + T L F+ YG+++ K V D+ TG+SKGYGF+ F
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203