Miyakogusa Predicted Gene
- Lj6g3v2287350.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
M5XN70_PRUPE |
404 |
75.1 |
86.0 |
(tr|M5XN70) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009432mg PE=4 SV=1 |
| TAIR_pep |
AT1G09660.1 |
310 |
61.6 |
74.4 |
| Symbols: | RNA-binding KH domain-containing protein | chr1:3128032-3130791 REVERSE LENGTH=298 |
| Medicago |
Medtr2g005590.2 |
374 |
72.1 |
78.3 |
| RNA-binding KH domain protein | HC | chr2:223815-220572 | 20130731 |
| Soybean |
Glyma12g28690.2 |
311 |
66.9 |
73.1 |
|
| LJGI |
gnl|LJGI|TC63759 |
1413 |
99.6 |
99.6 |
similar to UniRef100_Q1SL18 Cluster: KH; n=1; Medicago truncatula|Rep: KH - Medicago truncatula (Barrel medic), partial (57%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v2287350.1 |
length: 257 aa. |
| IPR004087 |
K Homology domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| HMMSmart |
SM00322 |
K |
8.7e-05 |
141-237 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.1370.10 |
no description |
2.1e-33 |
139-257 |
| HMMPanther |
PTHR11208 |
RNA-BINDING |
1.6e-77 |
17-257 |
| Seg |
seg |
seg |
NA |
14-32 |
| superfamily |
SSF54791 |
Eukaryotic |
4.2e-27 |
142-257 |
- Wolf-PSORT
Lj6g3v2287350.1 pero 5, mito 4, chlo 3, cyto 2, cyto_mito 2, mito_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v2287350.1 |
|