Miyakogusa Predicted Gene

Lj6g3v2274980.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MED3_SOYBN 1141 87.7 94.7 (tr|K7MED3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G40360.1 915 69.7 82.7 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:16853123-16856635 REVERSE LENGTH=753
Medicago Medtr2g006020.1 1083 78.5 87.1 | transducin/WD40 repeat protein | HC | chr2:424334-417314 | 20130731
Soybean Glyma12g28910.1 1078 87.5 95.0  
LJGI gnl|LJGI|TC58390 1598 100.0 100.0 similar to UniRef100_A7R5L6 Cluster: Chromosome undetermined scaffold_1000, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_1000, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v2274980.1 length: 722 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.00069 379-416
628-664
693-719
HMMSmart SM00320 WD40 0.00096 377-416
419-458
545-580
583-622
626-665
677-720
ProfileScan PS50082 WD_REPEATS_2 17.593 384-425
IPR012953 BOP1, N-terminal domain
Biological Process GO:0006364 rRNA processing    
HMMPfam PF08145 BOP1NT 2.6e-101 122-377
HMMSmart SM01035 BOP1NT 1.3e-129 122-377
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.4e-50 358-719
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 15.742 384-425
superfamily SSF50978 WD40 6.2e-53 340-720
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 403-417
no_ID  
Coil coil coiled-coil NA 156-177
HMMPanther PTHR17605 RIBOSOME 6.2e-294 30-721
Seg seg seg NA 30-61
74-96
Wolf-PSORT
Lj6g3v2274980.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v2274980.1