Miyakogusa Predicted Gene

Lj6g3v2274700.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7INR2_MEDTR 1011 78.8 83.9 (tr|G7INR2) ATP-dependent DNA helicase Q1 OS=Medicago truncatula GN=MTR_2g006440 PE=4 SV=1
TAIR_pep AT1G10930.1 762 67.7 78.8 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase (RECQl4A) | chr1:3648032-3654997 REVERSE LENGTH=1188
Medicago Medtr2g006440.1 1011 78.8 83.9 | ATP-dependent DNA helicase RecQ family protein | HC | chr2:578880-586948 | 20130731
Soybean Glyma08g20070.1 975 78.2 83.6  
LJGI gnl|LJGI|TC70316 716 100.0 100.0 similar to UniRef100_A7QCL7 Cluster: Chromosome chr12 scaffold_78, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_78, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v2274700.1 length: 907 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 4.7e-14 540-607
HMMSmart SM00490 helicase 2.2e-14 535-609
ProfileScan PS51194 HELICASE_CTER 15.533 510-658
IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00690 DEAH_ATP_HELICASE NA 424-433
IPR004589 DNA helicase, ATP-dependent, RecQ type
Biological Process GO:0006310 DNA recombination    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMTigr TIGR00614 recQ_fam: 2.8e-133 294-607
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1.8e-18 304-472
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 1.6e-11 608-713
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 7.9e-33 298-501
ProfileScan PS51192 HELICASE_ATP_BIND_1 22.795 310-485
IPR018982 RQC domain
Biological Process GO:0006260 DNA replication    
Biological Process GO:0006281 DNA repair    
Molecular Function GO:0043140 ATP-dependent 3'-5' DNA helicase activity    
HMMPfam PF09382 RQC 7.2e-14 608-708
HMMSmart SM00956 no description 1.2e-12 608-710
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.6e-48 340-607
no_ID  
Coil coil coiled-coil NA 160-181
Gene3D G3DSA:3.40.50.300 no description 3.1e-36 281-489
490-607
HMMPanther PTHR13710 DNA 0 62-856
HMMPanther PTHR13710:SF37 PREDICTED: 0 62-856
Seg seg seg NA 59-72
235-245
461-469
808-821
874-889
superfamily SSF46785 "Winged 9e-13 595-712
Wolf-PSORT
Lj6g3v2274700.1	nucl 11, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v2274700.1 Not targeted -46.033 -0.182 -3.559 66.72% -42.293