Miyakogusa Predicted Gene

Lj6g3v2259900.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7IK02_MEDTR 60.5 37.1 49.2 (tr|G7IK02) Protein SUPPRESSOR OF GENE SILENCING-like protein OS=Medicago truncatula GN=MTR_2g007690 PE=4 SV=1

TAIR_pep --No_Hits--

Medicago Medtr2g007690.2 60.5 37.1 49.2 | XS domain protein/XS zinc finger protein | HC | chr2:1079146-1083122 | 20130731

Soybean --No_Hits--

LJGI gnl|LJGI|TC62766 696 100.0 100.0 weakly similar to UniRef100_A2Q480 Cluster: Emr1, related; n=1; Medicago truncatula|Rep: Emr1, related - Medicago truncatula (Barrel medic), partial (14%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v2259900.1 length: 115 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 12-36
75-103

Seg seg seg NA 11-17
77-96

Wolf-PSORT

Lj6g3v2259900.1 cyto_nucl 5.5, mito 5, nucl 4.5, cyto 3.5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v2259900.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7IK02_MEDTR	60.5	37.1	49.2	(tr\|G7IK02) Protein SUPPRESSOR OF GENE SILENCING-like protein OS=Medicago truncatula GN=MTR_2g007690 PE=4 SV=1
TAIR_pep	--No_Hits--
Medicago	Medtr2g007690.2	60.5	37.1	49.2	\| XS domain protein/XS zinc finger protein \| HC \| chr2:1079146-1083122 \| 20130731
Soybean	--No_Hits--
LJGI	gnl\|LJGI\|TC62766	696	100.0	100.0	weakly similar to UniRef100_A2Q480 Cluster: Emr1, related; n=1; Medicago truncatula\|Rep: Emr1, related - Medicago truncatula (Barrel medic), partial (14%)

no_ID
Lj6g3v2259900.1				length: 115 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	12-36 75-103
Seg	seg	seg	NA	11-17 77-96