Miyakogusa Predicted Gene

Lj6g3v2218720.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7INS2_MEDTR 513 93.7 97.6 (tr|G7INS2) RNA export OS=Medicago truncatula GN=MTR_2g008410 PE=4 SV=1
TAIR_pep AT1G80670.1 471 83.7 93.7 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:30320809-30323543 REVERSE LENGTH=349
Medicago Medtr2g008410.1 513 93.7 97.6 | plant poly(A)+ RNA export protein | HC | chr2:1466615-1458038 | 20130731
Soybean Glyma08g19260.1 508 92.1 97.6  
LJGI gnl|LJGI|TC71932 712 100.0 100.0 similar to UniRef100_A7Q6X6 Cluster: Chromosome chr12 scaffold_57, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_57, whole genome shotgun sequence - Vitis vinifera (Grape), partial (57%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v2218720.1 length: 252 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.004 16-45
150-177
HMMSmart SM00320 WD40 0.0039 6-45
48-84
89-128
133-177
ProfileScan PS50082 WD_REPEATS_2 9.807 13-54
152-186
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.6e-43 2-214
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 18.088 1-186
superfamily SSF50978 WD40 1.5e-34 1-213
no_ID  
HMMPanther PTHR10971 MRNA 1.2e-141 1-252
HMMPanther PTHR10971:SF11 MRNA 1.2e-141 1-252
Wolf-PSORT
Lj6g3v2218720.1	chlo 5, cyto 4, nucl 3, vacu 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v2218720.1