Miyakogusa Predicted Gene

Lj6g3v2193660.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KUB2_SOYBN 781 88.3 92.5 (tr|I1KUB2) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G57150.1 711 84.0 91.4 | Symbols: NAP57, AtNAP57, CBF5, AtCBF5 | homologue of NAP57 | chr3:21154255-21155952 REVERSE LENGTH=565
Medicago Medtr4g074160.1 768 91.5 96.5 | centromere/microtubule-binding protein | HC | chr4:28203993-28206323 | 20130731
Soybean Glyma08g18860.1 735 84.6 88.6  
LJGI gnl|LJGI|TC72975 1532 99.9 99.9 homologue to UniRef100_A7PNL4 Cluster: Chromosome chr8 scaffold_23, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_23, whole genome shotgun sequence - Vitis vinifera (Grape), partial (38%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v2193660.1 length: 581 aa.
IPR002478 Pseudouridine synthase/archaeosine transglycosylase
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMPfam PF01472 PUA 1.6e-21 297-369
HMMSmart SM00359 Putative 1.8e-24 297-371
ProfileScan PS50890 PUA 19.222 296-371
IPR002501 Pseudouridine synthase II
Biological Process GO:0006396 RNA processing    
HMMPfam PF01509 TruB_N 2.7e-20 110-226
IPR004521 Uncharacterised domain CHP00451
Molecular Function GO:0003723 RNA binding    
HMMTigr TIGR00451 unchar_dom_2: 4.2e-09 291-368
IPR004802 tRNA pseudouridine synthase B family
Biological Process GO:0006396 RNA processing    
HMMPanther PTHR23127 CENTROMERE/MICROTUBULE 0 33-511
HMMTigr TIGR00425 CBF5: 2.2e-160 56-381
IPR012960 Dyskerin-like
HMMPfam PF08068 DKCLD 8e-29 48-106
IPR015947 PUA-like domain
Gene3D G3DSA:2.30.130.10 no description 1.2e-28 295-378
superfamily SSF88697 PUA 4.7e-26 295-379
IPR020103 Pseudouridine synthase, catalytic domain
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
superfamily SSF55120 Pseudouridine 1.4e-85 48-295
no_ID  
Coil coil coiled-coil NA 488-509
Seg seg seg NA 427-442
446-461
474-533
539-559
564-580
Wolf-PSORT
Lj6g3v2193660.1	cyto 7, chlo 2, nucl 2, mito 2, chlo_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v2193660.1