Miyakogusa Predicted Gene
- Lj6g3v2193630.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MDZ4_SOYBN |
1178 |
85.2 |
92.4 |
(tr|I1MDZ4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G64330.1 |
947 |
68.2 |
77.5 |
| Symbols: NPH3, RPT3, JK218 | Phototropic-responsive NPH3 family protein | chr5:25727568-25730225 FORWARD LENGTH=746 |
| Medicago |
Medtr2g009340.1 |
1154 |
83.3 |
89.8 |
| phototropic-responsive NPH3 family protein | HC | chr2:1883129-1886637 | 20130731 |
| Soybean |
Glyma15g06190.1 |
1178 |
85.2 |
92.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v2193630.1 |
length: 671 aa. |
| IPR000210 |
BTB/POZ-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMSmart |
SM00225 |
Broad-Complex, |
0.00013 |
46-144 |
| ProfileScan |
PS50097 |
BTB |
9.992 |
46-114 |
| IPR011333 |
BTB/POZ fold |
| Gene3D |
G3DSA:3.30.710.10 |
no description |
2.7e-10 |
40-131 |
| superfamily |
SSF54695 |
POZ |
9.8e-14 |
32-150 |
| IPR027356 |
NPH3 domain |
| HMMPfam |
PF03000 |
NPH3 |
9.7e-97 |
228-517 |
| ProfileScan |
PS51649 |
NPH3 |
93.198 |
228-541 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
587-622 |
| HMMPanther |
PTHR32370 |
FAMILY |
8.6e-284 |
22-671 |
| HMMPanther |
PTHR32370:SF0 |
SUBFAMILY |
8.6e-284 |
22-671 |
| Seg |
seg |
seg |
NA |
286-300 |
- Wolf-PSORT
Lj6g3v2193630.1 nucl 8, cyto 4, cysk_nucl 4, nucl_plas 4
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v2193630.1 |
|