Miyakogusa Predicted Gene

Lj6g3v2171950.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1ME36_SOYBN 675 84.2 91.2 (tr|I1ME36) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G37880.1 405 49.6 69.4 | Symbols: | LisH/CRA/RING-U-box domains-containing protein | chr4:17810183-17811349 FORWARD LENGTH=388
Medicago Medtr2g010210.1 643 79.1 88.0 | LisH/CRA/RING-U-box protein | HC | chr2:2270765-2267793 | 20130731
Soybean Glyma15g06630.1 675 84.2 91.2  
LJGI gnl|LJGI|TC58035 1394 99.9 99.9 similar to UniRef100_A7QSA7 Cluster: Chromosome chr3 scaffold_157, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_157, whole genome shotgun sequence - Vitis vinifera (Grape), partial (58%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v2171950.1 length: 384 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 Ring 0.00069 327-370
ProfileScan PS50089 ZF_RING_2 8.668 327-370
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
ProfileScan PS50896 LISH 7.674 109-141
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 1.1e-05 148-205
ProfileScan PS50897 CTLH 10.210 148-205
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1e-06 325-383
IPR013144 CRA domain
HMMSmart SM00757 CT11-RanBPM 1.9e-22 201-295
IPR024964 CTLH/CRA C-terminal to LisH motif domain
HMMPfam PF10607 CLTH 3e-30 148-289
IPR027370 RING-type zinc-finger, LisH dimerisation motif
HMMPfam PF13445 zf-RING_LisH 9.8e-22 316-369
no_ID  
Coil coil coiled-coil NA 70-91
HMMPanther PTHR12170 MACROPHAGE 3.5e-147 1-384
HMMPanther PTHR12170:SF3 SPORULATION 3.5e-147 1-384
Seg seg seg NA 15-25
superfamily SSF57850 RING/U-box 3.6e-08 322-384
Wolf-PSORT
Lj6g3v2171950.1	cyto 6, nucl 5, mito 1, pero 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v2171950.1