Miyakogusa Predicted Gene
- Lj6g3v2116830.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7LHQ3_MEDTR |
386 |
56.8 |
71.0 |
(tr|G7LHQ3) Ubiquitin carboxyl-terminal hydrolase OS=Medicago truncatula GN=MTR_8g067060 PE=3 SV=1 |
| TAIR_pep |
AT4G17895.1 |
303 |
48.1 |
64.4 |
| Symbols: UBP20 | ubiquitin-specific protease 20 | chr4:9939914-9942698 FORWARD LENGTH=695 |
| Medicago |
Medtr8g067060.1 |
385 |
56.8 |
71.0 |
| ubiquitin carboxyl-terminal hydrolase | LC | chr8:27986696-27983367 | 20130731 |
| Soybean |
Glyma09g33740.1 |
374 |
58.2 |
72.1 |
|
| LJGI |
gnl|LJGI|TC69611 |
256 |
93.6 |
93.6 |
similar to UniRef100_A7PC87 Cluster: Ubiquitin carboxyl-terminal hydrolase; n=1; Vitis vinifera|Rep: Ubiquitin carboxyl-terminal hydrolase - Vitis vinifera (Grape), partial (5%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v2116830.1 |
length: 402 aa. |
| IPR001394 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004221 |
ubiquitin thiolesterase activity |
|
|
| Biological Process |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
|
|
| HMMPfam |
PF00443 |
UCH |
3.7e-50 |
70-361 |
| ProfileScan |
PS50235 |
UCH_2_3 |
27.272 |
70-365 |
| IPR018200 |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site |
| Molecular Function |
GO:0004221 |
ubiquitin thiolesterase activity |
|
|
| Biological Process |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
|
|
| PatternScan |
PS00972 |
UCH_2_1 |
NA |
71-86 |
| PatternScan |
PS00973 |
UCH_2_2 |
NA |
306-324 |
| no_ID |
|
| HMMPanther |
PTHR24006 |
FAMILY |
2.5e-103 |
64-378 |
| HMMPanther |
PTHR24006:SF85 |
SUBFAMILY |
2.5e-103 |
64-378 |
| Seg |
seg |
seg |
NA |
15-28 |
| superfamily |
SSF54001 |
Cysteine |
8.9e-79 |
66-364 |
- Wolf-PSORT
Lj6g3v2116830.1 nucl 8, plas 2.5, golg_plas 2, cyto 1, mito 1, cysk 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v2116830.1 |
|