Miyakogusa Predicted Gene

Lj6g3v2043290.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3T7G4_LOTJA 912 86.8 87.0 (tr|I3T7G4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT1G60900.1 489 60.1 72.5 | Symbols: | U2 snRNP auxilliary factor, large subunit, splicing factor | chr1:22424008-22427806 FORWARD LENGTH=589

Medicago Medtr2g013130.1 688 67.4 75.8 | U2 snRNP auxilliary factor, large subunit, splicing factor | HC | chr2:3475903-3485643 | 20130731

Soybean Glyma06g48230.1 499 61.7 72.2

LJGI gnl|LJGI|TC73316 1332 99.9 99.9 similar to UniRef100_A7QYN5 Cluster: Chromosome undetermined scaffold_252, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_252, whole genome shotgun sequence - Vitis vinifera (Grape), partial (94%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v2043290.1 length: 517 aa.

IPR000504 RNA recognition motif domain

method AccNumber shortName E-value location

Molecular Function GO:0003676 nucleic acid binding

HMMPfam PF00076 RRM_1 6.8e-17 301-370

HMMSmart SM00360 RNA 2.9 180-258
300-373
427-513

ProfileScan PS50102 RRM 11.912 299-377
179-262

IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor

Molecular Function GO:0003723 RNA binding

Cellular Component GO:0005634 nucleus

Biological Process GO:0006397 mRNA processing

HMMTigr TIGR01642 U2AF_lg: 1.4e-150 19-517

IPR012677 Nucleotide-binding, alpha-beta plait

Molecular Function GO:0000166 nucleotide binding

Gene3D G3DSA:3.30.70.330 no description 1.9e-18 175-259
300-376
425-516

no_ID

HMMPanther PTHR23139 RNA-BINDING 1e-159 28-517

HMMPanther PTHR23139:SF9 SPLICING 1e-159 28-517

HMMPfam PF13893 RRM_5 1.8e-07 454-514

HMMPfam PF14259 RRM_6 1.7e-07 181-253

Seg seg seg NA 12-27
40-50
93-117
286-299

superfamily SSF54928 RNA-binding 1.4e-15 300-515
70-259

Wolf-PSORT

Lj6g3v2043290.1 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v2043290.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3T7G4_LOTJA	912	86.8	87.0	(tr\|I3T7G4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT1G60900.1	489	60.1	72.5	\| Symbols: \| U2 snRNP auxilliary factor, large subunit, splicing factor \| chr1:22424008-22427806 FORWARD LENGTH=589
Medicago	Medtr2g013130.1	688	67.4	75.8	\| U2 snRNP auxilliary factor, large subunit, splicing factor \| HC \| chr2:3475903-3485643 \| 20130731
Soybean	Glyma06g48230.1	499	61.7	72.2
LJGI	gnl\|LJGI\|TC73316	1332	99.9	99.9	similar to UniRef100_A7QYN5 Cluster: Chromosome undetermined scaffold_252, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome undetermined scaffold_252, whole genome shotgun sequence - Vitis vinifera (Grape), partial (94%)

IPR000504	RNA recognition motif domain
Lj6g3v2043290.1				length: 517 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
HMMPfam	PF00076	RRM_1	6.8e-17	301-370
HMMSmart	SM00360	RNA	2.9	180-258 300-373 427-513
ProfileScan	PS50102	RRM	11.912	299-377 179-262
IPR006529	U2 snRNP auxilliary factor, large subunit, splicing factor
Molecular Function	GO:0003723	RNA binding
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006397	mRNA processing
HMMTigr	TIGR01642	U2AF_lg:	1.4e-150	19-517
IPR012677	Nucleotide-binding, alpha-beta plait
Molecular Function	GO:0000166	nucleotide binding
Gene3D	G3DSA:3.30.70.330	no description	1.9e-18	175-259 300-376 425-516
no_ID
HMMPanther	PTHR23139	RNA-BINDING	1e-159	28-517
HMMPanther	PTHR23139:SF9	SPLICING	1e-159	28-517
HMMPfam	PF13893	RRM_5	1.8e-07	454-514
HMMPfam	PF14259	RRM_6	1.7e-07	181-253
Seg	seg	seg	NA	12-27 40-50 93-117 286-299
superfamily	SSF54928	RNA-binding	1.4e-15	300-515 70-259