Miyakogusa Predicted Gene
- Lj6g3v2006630.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1L7C4_SOYBN |
351 |
88.8 |
95.7 |
(tr|I1L7C4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G10240.1 |
303 |
74.2 |
86.8 |
| Symbols: FRS11 | FAR1-related sequence 11 | chr1:3356835-3359271 REVERSE LENGTH=680 |
| Medicago |
Medtr3g095940.1 |
48.9 |
44.0 |
70.0 |
| hypothetical protein | LC | chr3:43843817-43838164 | 20130731 |
| Soybean |
Glyma10g00380.1 |
351 |
88.8 |
95.7 |
|
| LJGI |
gnl|LJGI|TC70329 |
1074 |
99.1 |
99.1 |
homologue to UniRef100_Q1SKU8 Cluster: FAR1; Zinc finger, SWIM-type; n=1; Medicago truncatula|Rep: FAR1; Zinc finger, SWIM-type - Medicago truncatula (Barrel medic), partial (31%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v2006630.2 |
length: 198 aa. |
| IPR006564 |
Zinc finger, PMZ-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMSmart |
SM00575 |
plant |
0.0016 |
74-101 |
| IPR007527 |
Zinc finger, SWIM-type |
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF04434 |
SWIM |
5.6e-05 |
70-96 |
| ProfileScan |
PS50966 |
ZF_SWIM |
9.273 |
63-99 |
| no_ID |
|
| HMMPanther |
PTHR31669 |
FAMILY |
6.9e-19 |
10-171 |
| HMMPanther |
PTHR31669:SF0 |
SUBFAMILY |
6.9e-19 |
10-171 |
- Wolf-PSORT
Lj6g3v2006630.2 nucl 6, cyto 3, plas 1, extr 1, pero 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v2006630.2 |
|