Miyakogusa Predicted Gene

Lj6g3v2006110.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IK78_MEDTR 1220 86.0 91.0 (tr|G7IK78) ATP-dependent RNA helicase dhx8 OS=Medicago truncatula GN=MTR_2g015320 PE=4 SV=1
TAIR_pep AT4G18465.1 1077 74.0 86.2 | Symbols: | RNA helicase family protein | chr4:10197056-10201611 FORWARD LENGTH=695
Medicago Medtr2g015320.1 1220 86.0 91.0 | ATP-dependent RNA helicase DHX35 | HC | chr2:4513881-4525364 | 20130731
Soybean Glyma13g30610.1 1145 78.9 84.6  
LJGI gnl|LJGI|TC60051 1413 95.8 95.8 similar to UniRef100_A7QPM6 Cluster: Chromosome chr10 scaffold_138, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_138, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v2006110.2 length: 698 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.3e-12 310-398
HMMSmart SM00490 helicase 1.8e-17 293-399
ProfileScan PS51194 HELICASE_CTER 16.270 266-440
IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00690 DEAH_ATP_HELICASE NA 169-178
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 0.0083 67-228
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 2.5e-19 461-551
HMMSmart SM00847 Helicase 5.4e-27 460-551
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 2.2e-30 586-688
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 7.6e-23 50-237
ProfileScan PS51192 HELICASE_ATP_BIND_1 18.752 62-227
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.7e-103 21-573
no_ID  
Gene3D G3DSA:3.40.50.300 no description 5.8e-13 51-210
263-414
HMMPanther PTHR18934 ATP-DEPENDENT 0 42-691
Seg seg seg NA 31-38
219-231
384-399
Wolf-PSORT
Lj6g3v2006110.2	chlo 4, nucl 2, cyto 2, extr 2, cyto_nucl 2, mito 1, plas 1, vacu 1, E.R. 1, cysk_nucl 1, E.R._vacu 1, cyto_pero 1, E.R._plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v2006110.2