Miyakogusa Predicted Gene

Lj6g3v1984390.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3S6V4_LOTJA 664 100.0 100.0 (tr|I3S6V4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT3G18140.1 564 85.4 91.9 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:6212743-6214567 REVERSE LENGTH=305
Medicago Medtr2g016690.1 642 94.9 98.4 | transducin/WD-like repeat-protein | HC | chr2:5155282-5150008 | 20130731
Soybean Glyma15g09170.1 648 96.5 99.1  
LJGI gnl|LJGI|TC57212 1891 100.0 100.0 homologue to UniRef100_A7PWB3 Cluster: Chromosome chr8 scaffold_34, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_34, whole genome shotgun sequence - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1984390.2 length: 316 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 6.2e-09 7-21
69-106
119-147
202-243
250-285
HMMSmart SM00320 WD40 4.1e-07 24-62
67-106
109-147
150-190
200-243
246-285
ProfileScan PS50082 WD_REPEATS_2 13.416 1-30
74-108
115-156
207-245
253-294
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.4e-25 7-210
211-308
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 45.058 1-316
superfamily SSF50978 WD40 4.4e-69 5-289
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 8-22
93-107
134-148
230-244
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.2e-08 93-107
230-244
272-286
no_ID  
HMMPanther PTHR19842 G 1.4e-165 1-316
HMMPanther PTHR19842:SF0 SUBFAMILY 1.4e-165 1-316
Wolf-PSORT
Lj6g3v1984390.2	chlo 4, nucl 3, cyto 3, extr 3, cyto_nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1984390.2