Miyakogusa Predicted Gene
- Lj6g3v1966860.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr6
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MEX4_SOYBN |
996 |
86.9 |
90.1 |
(tr|I1MEX4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G29690.1 |
873 |
75.0 |
84.5 |
| Symbols: CAD1 | MAC/Perforin domain-containing protein | chr1:10379310-10381861 REVERSE LENGTH=561 |
| Medicago |
Medtr2g017740.1 |
968 |
85.4 |
89.6 |
| MACPF domain protein | HC | chr2:5448481-5454967 | 20130731 |
| Soybean |
Glyma15g09440.1 |
996 |
86.9 |
90.1 |
|
| LJGI |
gnl|LJGI|TC75217 |
1570 |
99.8 |
99.8 |
similar to UniRef100_A7QDD1 Cluster: Chromosome chr10 scaffold_81, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_81, whole genome shotgun sequence - Vitis vinifera (Grape), partial (90%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj6g3v1966860.1 |
length: 567 aa. |
| IPR020864 |
Membrane attack complex component/perforin (MACPF) domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF01823 |
MACPF |
1.4e-24 |
112-298 |
| HMMSmart |
SM00457 |
membrane-attack |
3.2e-08 |
131-300 |
| ProfileScan |
PS51412 |
MACPF_2 |
24.546 |
9-312 |
| no_ID |
|
| HMMPanther |
PTHR32413 |
FAMILY |
2.4e-295 |
8-567 |
| Seg |
seg |
seg |
NA |
500-516 |
- Wolf-PSORT
Lj6g3v1966860.1 chlo 5, cyto 3, nucl 2, cyto_pero 2, vacu 1, pero 1, golg 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj6g3v1966860.1 |
|