Miyakogusa Predicted Gene

Lj6g3v1966340.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL C6ZJY9_SOYBN 921 84.0 89.0 (tr|C6ZJY9) Serine hydroxymethyltransferase 4 OS=Glycine max PE=2 SV=1
TAIR_pep AT4G32520.2 827 75.8 83.9 | Symbols: SHM3 | serine hydroxymethyltransferase 3 | chr4:15689642-15692334 REVERSE LENGTH=529
Medicago Medtr2g018290.1 861 80.3 86.7 | serine transhydroxymethyltransferase | HC | chr2:5753431-5749086 | 20130731
Soybean Glyma13g29410.1 928 85.4 90.5  
LJGI gnl|LJGI|TC80734 3081 100.0 100.0 similar to UniRef100_A9PL11 Cluster: Plastid serine hydroxymethyltransferase; n=1; Populus tremuloides|Rep: Plastid serine hydroxymethyltransferase - Populus tremuloides (Quaking aspen), partial (88%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1966340.1 length: 516 aa.
IPR001085 Serine hydroxymethyltransferase
method AccNumber shortName E-value location
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
HAMAP MF_00051 SHMT 44.667 69-515
HMMPIR PIRSF000412 Serine/glycine 1.3e-223 47-515
HMMPanther PTHR11680 SERINE 8.2e-296 64-515
HMMPfam PF00464 SHMT 8.7e-191 70-460
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 1e-99 99-359
IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.90.1150.10 no description 1.4e-58 360-515
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 6.7e-175 51-515
IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
PatternScan PS00096 SHMT NA 293-309
no_ID  
HMMPanther PTHR11680:SF0 SUBFAMILY 8.2e-296 64-515
Wolf-PSORT
Lj6g3v1966340.1	chlo 7, cyto 3, nucl 2, extr 1, vacu 1, cysk_nucl 1, nucl_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1966340.1