Miyakogusa Predicted Gene

Lj6g3v1966330.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1M1K8_SOYBN 1542 81.0 88.0 (tr|I1M1K8) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT4G18050.1 1271 67.6 78.9 | Symbols: PGP9 | P-glycoprotein 9 | chr4:10022205-10027280 FORWARD LENGTH=1236
Medicago Medtr2g018350.1 1555 81.7 88.3 | ABC transporter B family protein | HC | chr2:5820381-5827523 | 20130731
Soybean Glyma13g29380.1 1542 81.0 88.0  
LJGI gnl|LJGI|FS350102 537 97.7 97.7 similar to UniRef100_A7QQI4 Cluster: Chromosome undetermined scaffold_143, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_143, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1966330.1 length: 935 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 2e-57 371-642
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 2.3e-22 70-195
734-860
ProfileScan PS50893 ABC_TRANSPORTER_2 23.496 28-264
692-929
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 1.8e-17 55-241
719-913
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 2.8e-64 350-850
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 167-181
832-846
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 45.845 371-657
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.3e-65 7-250
692-915
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 3.8e-55 357-673
Gene3D G3DSA:3.40.50.300 no description 1.1e-81 28-259
691-917
HMMPanther PTHR24222 FAMILY 0 1-935
HMMPanther PTHR24222:SF3 SUBFAMILY 0 1-935
Seg seg seg NA 302-322
792-810
876-886
Wolf-PSORT
Lj6g3v1966330.1	plas 8, E.R. 3, nucl 1, mito 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1966330.1