Miyakogusa Predicted Gene

Lj6g3v1952800.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M151_SOYBN 1277 79.6 86.4 (tr|K7M151) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G30290.1 991 70.0 84.8 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:10670320-10672740 REVERSE LENGTH=806
Medicago Medtr2g018550.1 1208 75.4 84.1 | pentatricopeptide (PPR) repeat protein | HC | chr2:5845943-5843116 | 20130731
Soybean Glyma15g09730.1 1082 87.9 93.9  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1952800.1 length: 781 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.14 183-213
255-279
537-564
673-696
HMMPfam PF12854 PPR_1 1.2e-07 354-383
387-419
495-524
632-664
HMMPfam PF13041 PPR_2 1.3e-12 285-334
426-474
567-614
HMMPfam PF13812 PPR_3 0.012 219-250
HMMTigr TIGR00756 PPR: 4.3e-07 183-216
220-251
254-287
288-321
323-357
359-392
396-428
429-463
464-497
499-532
537-567
571-602
604-637
639-667
ProfileScan PS51375 PPR 5.196 181-215
216-250
251-285
286-320
321-351
357-391
392-426
427-461
497-531
462-496
532-566
567-601
602-636
637-667
670-704
705-739
740-774
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 4.1e-08 222-386
599-698
no_ID  
HMMPanther PTHR24015 FAMILY 6e-153 115-747
HMMPanther PTHR24015:SF0 SUBFAMILY 6e-153 115-747
Seg seg seg NA 95-109
superfamily SSF48452 TPR-like 0.0032 599-699
superfamily SSF81901 HCP-like 5.7e-06 297-528
Wolf-PSORT
Lj6g3v1952800.1	cyto 6, chlo 4, mito 2.5, cyto_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1952800.1