Miyakogusa Predicted Gene

Lj6g3v1946540.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M5WJE3_PRUPE 914 72.9 83.9 (tr|M5WJE3) Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018206mg PE=4 SV=1
TAIR_pep AT4G21065.1 770 63.2 77.4 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11245976-11247763 FORWARD LENGTH=595
Medicago Medtr2g018870.1 997 79.0 85.6 | PPR containing plant-like protein | HC | chr2:6013889-6015841 | 20130731
Soybean Glyma13g29230.1 1004 84.2 88.3  
LJGI gnl|LJGI|BP053476 870 98.5 98.5 similar to UniRef100_A7Q1A2 Cluster: Chromosome chr10 scaffold_43, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_43, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1946540.1 length: 609 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.61 186-210
376-400
HMMPfam PF13041 PPR_2 7.6e-08 110-158
302-349
HMMPfam PF13812 PPR_3 0.014 212-235
HMMTigr TIGR00756 PPR: 0.00021 113-147
212-236
275-304
304-337
340-372
ProfileScan PS51375 PPR 6.160 111-145
201-235
146-180
302-336
271-301
236-270
337-367
373-403
439-473
no_ID  
HMMPanther PTHR24015 FAMILY 4.6e-301 49-609
HMMPanther PTHR24015:SF167PENTATRICOPEPTIDE (PPR) 4.6e-301 49-609
HMMPfam PF14432 DYW_deaminase 4.7e-16 487-599
Seg seg seg NA 3-11
27-37
320-331
505-516
Wolf-PSORT
Lj6g3v1946540.1	chlo 12, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1946540.1