Miyakogusa Predicted Gene

Lj6g3v1946390.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KRV4_SOYBN 732 62.5 69.8 (tr|I1KRV4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G46190.1 498 45.7 61.6 | Symbols: | RNA-binding KH domain-containing protein | chr5:18723435-18725834 REVERSE LENGTH=644
Medicago Medtr2g019090.1 719 62.9 70.0 | RNA-binding KH domain protein | HC | chr2:6163835-6158039 | 20130731
Soybean Glyma08g10330.1 732 62.5 69.8  
LJGI gnl|LJGI|TC80712 1334 99.9 99.9 similar to UniRef100_A7Q161 Cluster: Chromosome chr10 scaffold_43, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_43, whole genome shotgun sequence - Vitis vinifera (Grape), partial (36%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v1946390.2 length: 608 aa.
IPR004087 K Homology domain
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMSmart SM00322 K 8.9e-13 35-106
138-216
290-362
370-444
536-606
IPR004088 K Homology domain, type 1
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00013 KH_1 4.5e-13 39-88
142-210
294-344
374-437
539-601
ProfileScan PS50084 KH_TYPE_1 16.458 36-86
139-211
291-357
371-439
537-601
no_ID  
Gene3D G3DSA:3.30.1370.10 no description 2.9e-16 35-86
138-215
290-346
369-446
532-605
HMMPanther PTHR24585 FAMILY 6.4e-143 190-608
HMMPanther PTHR24585:SF6 SUBFAMILY 6.4e-143 190-608
Seg seg seg NA 48-59
90-101
133-141
230-244
383-394
462-483
498-526
superfamily SSF54791 Eukaryotic 1.1e-11 358-457
524-605
23-87
126-249
285-364
Wolf-PSORT
Lj6g3v1946390.2	nucl 6, cyto 4, chlo 2, cyto_pero 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v1946390.2 Not targeted -63.694 -1.660 -15.088 92.07% -46.945